Activated GEnebank NeTwork

Informations projet

AGENT

N° de convention de subvention: 862613

DOI

10.3030/862613

Projet clôturé

Date de signature de la CE 20 Avril 2020

Date de début 1 Mai 2020

Date de fin 30 Avril 2025

Financé au titre de

• SOCIETAL CHALLENGES - Food security, sustainable agriculture and forestry, marine, maritime and inland water research, and the bioeconomy

Coût total

€ 7 258 537,50

Contribution de l’UE

€ 7 199 787,50

Coordonné par

LEIBNIZ - INSTITUT FUER PFLANZENGENETIK UND KULTURPFLANZENFORSCHUNG
Germany

CORDIS fournit des liens vers les livrables publics et les publications des projets HORIZON.

Les liens vers les livrables et les publications des projets du 7e PC, ainsi que les liens vers certains types de résultats spécifiques tels que les jeux de données et les logiciels, sont récupérés dynamiquement sur OpenAIRE .

Livrables

Documents, reports (9)

Reports with genebank capacity building recommendations

Reports with genebank capacity building recommendations (M59)

Extended submission format for EURISCO

Extended submission format for EURISCO M36

Use FIGS+ score to define gap analysis for joint collection missions and supporting documents for in situ protection

Use FIGS+ score to define gap analysis for joint collection missions and supporting documents for in situ protection (M58)

Report on genotypic information of ‘bridging collection'

Report on genotypic information of bridging collection M18

VCF file reporting SNP variation of all barley and wheat samples within AGENT

VCF file reporting SNP variation of all barley and wheat samples within AGENT (M42)

Report on genotypic information of ‘precision collections'

Report on genotypic information of ‘precision collections’ (M36)

Final webinar to disseminate knowledge on digital gene banking to the wider community

Final webinar to disseminate knowledge on digital gene banking to the wider community (M60)

Final guidelines for dataflow

Final guidelines for dataflow M18

AGENT integrated data workflow developed and deployed

AGENT integrated data workflow developed and deployed (M48)

Websites, patent fillings, videos etc. (8)

Communication Toolkit

D72Communication Toolkit M7

Public project website

Public project website M4

Assign a FIGS+ score for each trait to all AGENT accessions

Assign a FIGS+ score for each trait to all AGENT accessions (M57)

Discovery and retrieval of genomic and phenotypic data possible through EURISCO and additional search interfaces

Discovery and retrieval of genomic and phenotypic data possible through EURISCO and additional search interfaces M24

Audio-visual material to explain key features of the project

Audio-visual material to explain key features of the project (M48)

Assign haplotype score to all AGENT accessions for QTLs newly discovered or from the literature

Assign haplotype score to all AGENT accessions for QTLs newly discovered or from the literature (M50)

Final release of the AGENT data platform, including tools for data management, analysis, prediction, visualisation and access

Final release of the AGENT data platform, including tools for data management, analysis, prediction, visualisation and access (M60)

Assign genomic estimated breeding values for each trait to all AGENT accessions

Assign genomic estimated breeding values for each trait to all AGENT accessions (M54)

Demonstrators, pilots, prototypes (1)

SNP assay for QC and QM in AGENT gene banks

SNP assay for QC and QM in AGENT gene banks M12

Publications

Peer reviewed articles (22)

The German Federal Ex Situ Genebank for Agricultural and Horticultural Crops – Conservation, exploitation and steps towards a bio-digital resource centre

Auteurs: Stephan Weise, Frank R. Blattner, Andreas Börner, Klaus J. Dehmer, Marion Grübe, Dörte Harpke, Ulrike Lohwasser, Markus Oppermann, Nils Stein, Evelin Willner, Manuela Nagel
Publié dans: Genetic Resources, 2025, Page(s) 91-105, ISSN 2708-3764
Éditeur: Alliance of Bioversity International and CIAT
DOI: 10.46265/genresj.gydy5145

Genomic predictions to leverage phenotypic data across genebanks

Auteurs: El Hanafi S, Jiang Y, Kehel Z, Schulthess AW, Zhao Y, Mascher M, Haupt M, Himmelbach A, Stein N, Amri A and Reif JC
Publié dans: Frontiers - Plant Science, 2023, ISSN 1664-462X
Éditeur: Frontiers Media S. A.
DOI: 10.3389/fpls.2023.1227656

Trait-customized sampling of core collections from a winter wheat genebank collection supports association studies

Auteurs: Marcel O. Berkner, Yong Jiang, Jochen C. Reif, Albert W. Schulthess
Publié dans: Frontiers in Plant Science, Numéro 15, 2024, ISSN 1664-462X
Éditeur: Frontiers Media S. A.
DOI: 10.3389/fpls.2024.1451749

From data to knowledge - big data needs stewardship, a plant phenomics perspective

Auteurs: Arend, Daniel; Psaroudakis, Dennis; Memon, Junaid Altaf; Rey‐Mazón, Elena; Schüler, Danuta; Szymanski, Jedrzej Jakub; Scholz, Uwe; Junker, Astrid; Lange, Matthias
Publié dans: The plant journal, 111(2):335-347, Numéro vol. 11, No. 2, 2022, ISSN 0960-7412
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/tpj.15804

BARLEY YIELD RESPONSE TO AGROCLIMATIC INDICES VARIABILITY

Auteurs: Liliana VASILESCU, Eugen PETCU, Alexandrina SÎRBU, Cătălin LAZĂR, Lenuța Iuliana EPURE, Elena PETCU, Lidia CANĂ, Maria TOADER
Publié dans: Scientific Papers. Series A. Agronomy, 2022, ISSN 2285-5807
Éditeur: University of Agronomic Sciences and Veterinary Medicine of Bucharest
DOI: 10.5281/zenodo.7139879

Advancing the Conservation and Utilization of Barley Genetic Resources: Insights into Germplasm Management and Breeding for Sustainable Agriculture

Auteurs: Visioni, A.; Basile, B.; Amri, A.; Sanchez-Garcia, M.; Corrado, G.
Publié dans: Plants, Numéro 2023, 12(18), 2023, Page(s) 3186, ISSN 2223-7747
Éditeur: MDPI
DOI: 10.3390/plants12183186

PhenoApp: A mobile tool for plant phenotyping to record field and greenhouse observations

Auteurs: Franco Röckel; Toni Schreiber; Danuta Schüler; Ulrike Braun; Ina Krukenberg; Florian Schwander; Andreas Peil; Christine Brandt; Evelin Willner; Daniel Gransow; Uwe Scholz; Steffen Kecke; Erika Maul; Matthias Lange; Reinhard Töpfer
Publié dans: Crossref, Numéro 1, 2022, ISSN 2046-1402
Éditeur: F1000 Research Ltd.
DOI: 10.12688/f1000research.74239.1

Curation of historical phenotypic wheat data from the Czech Genebank for research and breeding

Auteurs: Pavel Svoboda, Vojtěch Holubec, Jochen C. Reif, Marcel O. Berkner
Publié dans: Scientific Data, Numéro 11, 2024, ISSN 2052-4463
Éditeur: Springer Science and Business Media LLC
DOI: 10.1038/s41597-024-03598-1

Recommendations for the formatting of Variant Call Format (VCF) files to make plant genotyping data FAIR

Auteurs: Sebastian Beier; Anne Fiebig; Cyril Pommier; Isuru Liyanage; Matthias Lange; Paul J. Kersey; Stephan Weise; Richard Finkers; Baron Koylass; Timothee Cezard; Mélanie Courtot; Bruno Contreras-Moreira; Guy Naamati; Sarah Dyer; Uwe Scholz
Publié dans: F1000Research 11 (2022), Numéro 1, 2022, ISSN 2046-1402
Éditeur: F1000 Research Ltd.
DOI: 10.12688/f1000research.109080.2

GRAIN MORPHOMETRY ANALYSIS OF ROMANIAN WINTER BARLEY CULTIVARS REGISTERED DURING 1959-2019 PERIOD

Auteurs: Liliana Vasilescu, Eugen Petcu, Alexandrina Sîrbu, Elena Petcu, Cătălin Lazăr
Publié dans: ROMANIAN AGRICULTURAL RESEARCH, 2022, ISSN 2067-5720
Éditeur: National Agricultural Research Institute Fundulea
DOI: 10.5281/zenodo.6962256

PhenoApp: A mobile tool for plant phenotyping to record field and greenhouse observations

Auteurs: Franco Röckel, Toni Schreiber, Danuta Schüler, Ulrike Braun, Ina Krukenberg, Florian Schwander, Andreas Peil, Christine Brandt, Evelin Willner, Daniel Gransow, Uwe Scholz, Steffen Kecke, Erika Maul, Matthias Lange, Reinhard Töpfer
Publié dans: F1000Research, Numéro 11, 2023, Page(s) 12, ISSN 2046-1402
Éditeur: F1000 Research Ltd.
DOI: 10.12688/f1000research.74239.2

Strengthening European research cooperation on plant genetic resources conservation and use

Auteurs: Sandra Goritschnig, Stephan Weise, Filippo Guzzon, Lorenzo Maggioni, Theo Van Hintum, Lise Lykke Steffensen, Nils Stein, Giovanni Giuliano
Publié dans: Genetic Resources, 2025, Page(s) 119-134, ISSN 2708-3764
Éditeur: Alliance of Bioversity International and CIAT
DOI: 10.46265/genresj.luzj7324

Choosing the right tool: Leveraging of plant genetic resources in wheat (Triticum aestivum L.) benefits from selection of a suitable genomic prediction model

Auteurs: Marcel O. Berkner, Albert W. Schulthess, Yong Jiang, Yusheng Zhao, Markus Oppermann, and Jochen C. Reif
Publié dans: Theoretical and Applied Genetics, Numéro 194, 2022, ISSN 1432-2242
Éditeur: Springer Science+Business Media
DOI: 10.1007/s00122-022-04227-4

Using Genome-Wide Predictions to Assess the Phenotypic Variation of a Barley (Hordeum sp.) Gene Bank Collection for Important Agronomic Traits and Passport Information

Auteurs: Yong Jiang, Stephan Weise, Andreas Graner, Jochen C. Reif
Publié dans: Frontiers in Plant Science, Numéro 11, 2021, ISSN 1664-462X
Éditeur: Frontiers Media S. A.
DOI: 10.3389/fpls.2020.604781

Genetic Diversity regarding grain size and shape of common winter wheat

Auteurs: Cristina Mihaela MARINCIU, Gabriela ŞERBAN, Indira GALIT, Vasile MANDEA
Publié dans: Scientific Papers Agronomy, 2021, ISSN 2285-5785
Éditeur: University of Agronomic Sciences and Veterinary Medicine of Bucharest

Genebank Peer Reviews: A powerful tool to improve genebank quality and promote collaboration

Auteurs: Theo Van Hintum, Sharon Balding, Gergana Desheva, John Dickie, María José Díez, Luis Guasch, Pavol Hauptvogel, Vojtěch Holubec, Dagmar Janovská, Ulrike Lohwasser, Isaura Martín, Ludmila Papoušková, Beate Schierscher-Viret, Lise Lykke Steffensen, Katya Uzundzhalieva, Patrizia Vaccino, José Vicente Valcárcel
Publié dans: Genetic Resources, Numéro 6, 2025, Page(s) 115-121, ISSN 2708-3764
Éditeur: Alliance of Bioversity International and CIAT
DOI: 10.46265/genresj.oadz7911

Introducing Beneficial Alleles from Plant Genetic Resources into the Wheat Germplasm

Auteurs: Shivali Sharma, Albert W. Schulthess, Filippo M. Bassi, Ekaterina D. Badaeva, Kerstin Neumann, Andreas Graner, Hakan Özkan, Peter Werner, Helmut Knüpffer, Benjamin Kilian
Publié dans: Biology, Numéro 10/10, 2021, Page(s) 982, ISSN 2079-7737
Éditeur: MDPI
DOI: 10.3390/biology10100982

Genomic prediction models trained with historical records enable populating the German ex situ genebank bio-digital resource center of barley (Hordeum sp.) with information on resistances to soilborne barley mosaic viruses

Auteurs: Maria Y. Gonzalez, Yusheng Zhao, Yong Jiang, Nils Stein, Antje Habekuss, Jochen C. Reif, Albert W. Schulthess
Publié dans: Theoretical and Applied Genetics, Numéro 134/7, 2021, Page(s) 2181-2196, ISSN 0040-5752
Éditeur: Springer Verlag
DOI: 10.1007/s00122-021-03815-0

Exploring the legacy of Central European historical winter wheat landraces

Auteurs: András Cseh, Péter Poczai, Tibor Kiss, Krisztina Balla, Zita Berki, Ádám Horváth, Csaba Kuti & Ildikó Karsai
Publié dans: Sci Rep, 2021, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/s41598-021-03261-4

k-mer-based GWAS in a wheat collection reveals novel and diverse sources of powdery mildew resistance

Auteurs: Benjamin Jaegle, Yoav Voichek, Max Haupt, Alexandros G. Sotiropoulos, Kevin Gauthier, Matthias Heuberger, Esther Jung, Gerhard Herren, Victoria Widrig, Rebecca Leber, Yipu Li, Beate Schierscher, Sarah Serex, Maja Boczkowska, Marta-Puchta Jasińska, Paulina Bolc, Boulos Chalhoub, Nils Stein, Beat Keller, Javier Sánchez-Martín
Publié dans: Genome Biology, Numéro 26, 2025, ISSN 1474-760X
Éditeur: Springer Science and Business Media LLC
DOI: 10.1186/s13059-025-03645-z

Genomic prediction reveals unexplored variation in grain protein and lysine content across a vast winter wheat genebank collection

Auteurs: Berkner MO, Weise S, Reif JC and Schulthess AW
Publié dans: Frontiers - Plant Science (Sec. Plant Breeding ), Numéro Volume 14 - 2023, 2024, ISSN 1664-462X
Éditeur: Frontiers Media S. A.
DOI: 10.3389/fpls.2023.1270298

"""On the Way to Plant Data Commons - A Genotyping Use Case"""

Auteurs: Manuel Feser, Patrick König, Anne Fiebig, Daniel Arend, Matthias Lange, Uwe Scholz
Publié dans: Journal of Integrative Bioinformatics, 2022, ISSN 1613-4516
Éditeur: Informationsmanagement in der Biotechnologie e.V. (IMBio e.V.)
DOI: 10.1515/jib-2022-0033

Other (2)

Updated genebank manuals available on the ECPGR website

Auteurs: Katya Uzundzhalieva, Gergana Desheva, Dagmar Janovská, Ludmila Papoušková, Miloš Faltus, Miroslav Hýbl, Zdeněk Beneš, Patrizia Vaccino, Theo v. Hintum, Lise Lykke Steffensen, Maja Boczkowska,Pavol Hauptvogel, Ľubomír Mendel, Martin Gálik, Iveta Čičová, Erika Zetochová, Marcela Gubišová, René Hauptvogel, Marek Varga, Luis Guasch, Isaura Martin, Lucía de la Rosa, Beate Schiersc
Publié dans: 2024
Éditeur: ecpgr

Reports of genebank visits

Auteurs: Ulrike Lohwasser, Pavol Hauptvogel, Theo van Hintum, Dagmar Janovská, Ludmila Papoušková, Iveta Čičová, Katya Uzundzhalieva, Gergana Desheva, Isaura Martin, Luis Guasch, John Dickie, Lise Lykke Steffensen, Beate Schierscher-Viret, Patrizia Vaccino, Maja Boczkowska
Publié dans: 2024
Éditeur: ECPGR