Activated GEnebank NeTwork

Informazioni relative al progetto

AGENT

ID dell’accordo di sovvenzione: 862613

DOI

10.3030/862613

Progetto chiuso

Data della firma CE 20 Aprile 2020

Data di avvio 1 Maggio 2020

Data di completamento 30 Aprile 2025

Finanziato da

• SOCIETAL CHALLENGES - Food security, sustainable agriculture and forestry, marine, maritime and inland water research, and the bioeconomy

Costo totale

€ 7 258 537,50

Contributo UE

€ 7 199 787,50

Coordinato da

LEIBNIZ - INSTITUT FUER PFLANZENGENETIK UND KULTURPFLANZENFORSCHUNG
Germany

CORDIS fornisce collegamenti ai risultati finali pubblici e alle pubblicazioni dei progetti ORIZZONTE.

I link ai risultati e alle pubblicazioni dei progetti del 7° PQ, così come i link ad alcuni tipi di risultati specifici come dataset e software, sono recuperati dinamicamente da .OpenAIRE .

Risultati finali

Documents, reports (9)

Reports with genebank capacity building recommendations

Reports with genebank capacity building recommendations (M59)

Extended submission format for EURISCO

Extended submission format for EURISCO M36

Use FIGS+ score to define gap analysis for joint collection missions and supporting documents for in situ protection

Use FIGS+ score to define gap analysis for joint collection missions and supporting documents for in situ protection (M58)

Report on genotypic information of ‘bridging collection'

Report on genotypic information of bridging collection M18

VCF file reporting SNP variation of all barley and wheat samples within AGENT

VCF file reporting SNP variation of all barley and wheat samples within AGENT (M42)

Report on genotypic information of ‘precision collections'

Report on genotypic information of ‘precision collections’ (M36)

Final webinar to disseminate knowledge on digital gene banking to the wider community

Final webinar to disseminate knowledge on digital gene banking to the wider community (M60)

Final guidelines for dataflow

Final guidelines for dataflow M18

AGENT integrated data workflow developed and deployed

AGENT integrated data workflow developed and deployed (M48)

Websites, patent fillings, videos etc. (8)

Communication Toolkit

D72Communication Toolkit M7

Public project website

Public project website M4

Assign a FIGS+ score for each trait to all AGENT accessions

Assign a FIGS+ score for each trait to all AGENT accessions (M57)

Discovery and retrieval of genomic and phenotypic data possible through EURISCO and additional search interfaces

Discovery and retrieval of genomic and phenotypic data possible through EURISCO and additional search interfaces M24

Audio-visual material to explain key features of the project

Audio-visual material to explain key features of the project (M48)

Assign haplotype score to all AGENT accessions for QTLs newly discovered or from the literature

Assign haplotype score to all AGENT accessions for QTLs newly discovered or from the literature (M50)

Final release of the AGENT data platform, including tools for data management, analysis, prediction, visualisation and access

Final release of the AGENT data platform, including tools for data management, analysis, prediction, visualisation and access (M60)

Assign genomic estimated breeding values for each trait to all AGENT accessions

Assign genomic estimated breeding values for each trait to all AGENT accessions (M54)

Demonstrators, pilots, prototypes (1)

SNP assay for QC and QM in AGENT gene banks

SNP assay for QC and QM in AGENT gene banks M12

Pubblicazioni

Peer reviewed articles (22)

The German Federal Ex Situ Genebank for Agricultural and Horticultural Crops – Conservation, exploitation and steps towards a bio-digital resource centre

Autori: Stephan Weise, Frank R. Blattner, Andreas Börner, Klaus J. Dehmer, Marion Grübe, Dörte Harpke, Ulrike Lohwasser, Markus Oppermann, Nils Stein, Evelin Willner, Manuela Nagel
Pubblicato in: Genetic Resources, 2025, Pagina/e 91-105, ISSN 2708-3764
Editore: Alliance of Bioversity International and CIAT
DOI: 10.46265/genresj.gydy5145

Genomic predictions to leverage phenotypic data across genebanks

Autori: El Hanafi S, Jiang Y, Kehel Z, Schulthess AW, Zhao Y, Mascher M, Haupt M, Himmelbach A, Stein N, Amri A and Reif JC
Pubblicato in: Frontiers - Plant Science, 2023, ISSN 1664-462X
Editore: Frontiers Media S. A.
DOI: 10.3389/fpls.2023.1227656

Trait-customized sampling of core collections from a winter wheat genebank collection supports association studies

Autori: Marcel O. Berkner, Yong Jiang, Jochen C. Reif, Albert W. Schulthess
Pubblicato in: Frontiers in Plant Science, Numero 15, 2024, ISSN 1664-462X
Editore: Frontiers Media S. A.
DOI: 10.3389/fpls.2024.1451749

From data to knowledge - big data needs stewardship, a plant phenomics perspective

Autori: Arend, Daniel; Psaroudakis, Dennis; Memon, Junaid Altaf; Rey‐Mazón, Elena; Schüler, Danuta; Szymanski, Jedrzej Jakub; Scholz, Uwe; Junker, Astrid; Lange, Matthias
Pubblicato in: The plant journal, 111(2):335-347, Numero vol. 11, No. 2, 2022, ISSN 0960-7412
Editore: Blackwell Publishing Inc.
DOI: 10.1111/tpj.15804

BARLEY YIELD RESPONSE TO AGROCLIMATIC INDICES VARIABILITY

Autori: Liliana VASILESCU, Eugen PETCU, Alexandrina SÎRBU, Cătălin LAZĂR, Lenuța Iuliana EPURE, Elena PETCU, Lidia CANĂ, Maria TOADER
Pubblicato in: Scientific Papers. Series A. Agronomy, 2022, ISSN 2285-5807
Editore: University of Agronomic Sciences and Veterinary Medicine of Bucharest
DOI: 10.5281/zenodo.7139879

Advancing the Conservation and Utilization of Barley Genetic Resources: Insights into Germplasm Management and Breeding for Sustainable Agriculture

Autori: Visioni, A.; Basile, B.; Amri, A.; Sanchez-Garcia, M.; Corrado, G.
Pubblicato in: Plants, Numero 2023, 12(18), 2023, Pagina/e 3186, ISSN 2223-7747
Editore: MDPI
DOI: 10.3390/plants12183186

PhenoApp: A mobile tool for plant phenotyping to record field and greenhouse observations

Autori: Franco Röckel; Toni Schreiber; Danuta Schüler; Ulrike Braun; Ina Krukenberg; Florian Schwander; Andreas Peil; Christine Brandt; Evelin Willner; Daniel Gransow; Uwe Scholz; Steffen Kecke; Erika Maul; Matthias Lange; Reinhard Töpfer
Pubblicato in: Crossref, Numero 1, 2022, ISSN 2046-1402
Editore: F1000 Research Ltd.
DOI: 10.12688/f1000research.74239.1

Curation of historical phenotypic wheat data from the Czech Genebank for research and breeding

Autori: Pavel Svoboda, Vojtěch Holubec, Jochen C. Reif, Marcel O. Berkner
Pubblicato in: Scientific Data, Numero 11, 2024, ISSN 2052-4463
Editore: Springer Science and Business Media LLC
DOI: 10.1038/s41597-024-03598-1

Recommendations for the formatting of Variant Call Format (VCF) files to make plant genotyping data FAIR

Autori: Sebastian Beier; Anne Fiebig; Cyril Pommier; Isuru Liyanage; Matthias Lange; Paul J. Kersey; Stephan Weise; Richard Finkers; Baron Koylass; Timothee Cezard; Mélanie Courtot; Bruno Contreras-Moreira; Guy Naamati; Sarah Dyer; Uwe Scholz
Pubblicato in: F1000Research 11 (2022), Numero 1, 2022, ISSN 2046-1402
Editore: F1000 Research Ltd.
DOI: 10.12688/f1000research.109080.2

GRAIN MORPHOMETRY ANALYSIS OF ROMANIAN WINTER BARLEY CULTIVARS REGISTERED DURING 1959-2019 PERIOD

Autori: Liliana Vasilescu, Eugen Petcu, Alexandrina Sîrbu, Elena Petcu, Cătălin Lazăr
Pubblicato in: ROMANIAN AGRICULTURAL RESEARCH, 2022, ISSN 2067-5720
Editore: National Agricultural Research Institute Fundulea
DOI: 10.5281/zenodo.6962256

PhenoApp: A mobile tool for plant phenotyping to record field and greenhouse observations

Autori: Franco Röckel, Toni Schreiber, Danuta Schüler, Ulrike Braun, Ina Krukenberg, Florian Schwander, Andreas Peil, Christine Brandt, Evelin Willner, Daniel Gransow, Uwe Scholz, Steffen Kecke, Erika Maul, Matthias Lange, Reinhard Töpfer
Pubblicato in: F1000Research, Numero 11, 2023, Pagina/e 12, ISSN 2046-1402
Editore: F1000 Research Ltd.
DOI: 10.12688/f1000research.74239.2

Strengthening European research cooperation on plant genetic resources conservation and use

Autori: Sandra Goritschnig, Stephan Weise, Filippo Guzzon, Lorenzo Maggioni, Theo Van Hintum, Lise Lykke Steffensen, Nils Stein, Giovanni Giuliano
Pubblicato in: Genetic Resources, 2025, Pagina/e 119-134, ISSN 2708-3764
Editore: Alliance of Bioversity International and CIAT
DOI: 10.46265/genresj.luzj7324

Choosing the right tool: Leveraging of plant genetic resources in wheat (Triticum aestivum L.) benefits from selection of a suitable genomic prediction model

Autori: Marcel O. Berkner, Albert W. Schulthess, Yong Jiang, Yusheng Zhao, Markus Oppermann, and Jochen C. Reif
Pubblicato in: Theoretical and Applied Genetics, Numero 194, 2022, ISSN 1432-2242
Editore: Springer Science+Business Media
DOI: 10.1007/s00122-022-04227-4

Using Genome-Wide Predictions to Assess the Phenotypic Variation of a Barley (Hordeum sp.) Gene Bank Collection for Important Agronomic Traits and Passport Information

Autori: Yong Jiang, Stephan Weise, Andreas Graner, Jochen C. Reif
Pubblicato in: Frontiers in Plant Science, Numero 11, 2021, ISSN 1664-462X
Editore: Frontiers Media S. A.
DOI: 10.3389/fpls.2020.604781

Genetic Diversity regarding grain size and shape of common winter wheat

Autori: Cristina Mihaela MARINCIU, Gabriela ŞERBAN, Indira GALIT, Vasile MANDEA
Pubblicato in: Scientific Papers Agronomy, 2021, ISSN 2285-5785
Editore: University of Agronomic Sciences and Veterinary Medicine of Bucharest

Genebank Peer Reviews: A powerful tool to improve genebank quality and promote collaboration

Autori: Theo Van Hintum, Sharon Balding, Gergana Desheva, John Dickie, María José Díez, Luis Guasch, Pavol Hauptvogel, Vojtěch Holubec, Dagmar Janovská, Ulrike Lohwasser, Isaura Martín, Ludmila Papoušková, Beate Schierscher-Viret, Lise Lykke Steffensen, Katya Uzundzhalieva, Patrizia Vaccino, José Vicente Valcárcel
Pubblicato in: Genetic Resources, Numero 6, 2025, Pagina/e 115-121, ISSN 2708-3764
Editore: Alliance of Bioversity International and CIAT
DOI: 10.46265/genresj.oadz7911

Introducing Beneficial Alleles from Plant Genetic Resources into the Wheat Germplasm

Autori: Shivali Sharma, Albert W. Schulthess, Filippo M. Bassi, Ekaterina D. Badaeva, Kerstin Neumann, Andreas Graner, Hakan Özkan, Peter Werner, Helmut Knüpffer, Benjamin Kilian
Pubblicato in: Biology, Numero 10/10, 2021, Pagina/e 982, ISSN 2079-7737
Editore: MDPI
DOI: 10.3390/biology10100982

Genomic prediction models trained with historical records enable populating the German ex situ genebank bio-digital resource center of barley (Hordeum sp.) with information on resistances to soilborne barley mosaic viruses

Autori: Maria Y. Gonzalez, Yusheng Zhao, Yong Jiang, Nils Stein, Antje Habekuss, Jochen C. Reif, Albert W. Schulthess
Pubblicato in: Theoretical and Applied Genetics, Numero 134/7, 2021, Pagina/e 2181-2196, ISSN 0040-5752
Editore: Springer Verlag
DOI: 10.1007/s00122-021-03815-0

Exploring the legacy of Central European historical winter wheat landraces

Autori: András Cseh, Péter Poczai, Tibor Kiss, Krisztina Balla, Zita Berki, Ádám Horváth, Csaba Kuti & Ildikó Karsai
Pubblicato in: Sci Rep, 2021, ISSN 2045-2322
Editore: Nature Publishing Group
DOI: 10.1038/s41598-021-03261-4

k-mer-based GWAS in a wheat collection reveals novel and diverse sources of powdery mildew resistance

Autori: Benjamin Jaegle, Yoav Voichek, Max Haupt, Alexandros G. Sotiropoulos, Kevin Gauthier, Matthias Heuberger, Esther Jung, Gerhard Herren, Victoria Widrig, Rebecca Leber, Yipu Li, Beate Schierscher, Sarah Serex, Maja Boczkowska, Marta-Puchta Jasińska, Paulina Bolc, Boulos Chalhoub, Nils Stein, Beat Keller, Javier Sánchez-Martín
Pubblicato in: Genome Biology, Numero 26, 2025, ISSN 1474-760X
Editore: Springer Science and Business Media LLC
DOI: 10.1186/s13059-025-03645-z

Genomic prediction reveals unexplored variation in grain protein and lysine content across a vast winter wheat genebank collection

Autori: Berkner MO, Weise S, Reif JC and Schulthess AW
Pubblicato in: Frontiers - Plant Science (Sec. Plant Breeding ), Numero Volume 14 - 2023, 2024, ISSN 1664-462X
Editore: Frontiers Media S. A.
DOI: 10.3389/fpls.2023.1270298

"""On the Way to Plant Data Commons - A Genotyping Use Case"""

Autori: Manuel Feser, Patrick König, Anne Fiebig, Daniel Arend, Matthias Lange, Uwe Scholz
Pubblicato in: Journal of Integrative Bioinformatics, 2022, ISSN 1613-4516
Editore: Informationsmanagement in der Biotechnologie e.V. (IMBio e.V.)
DOI: 10.1515/jib-2022-0033

Other (2)

Updated genebank manuals available on the ECPGR website

Autori: Katya Uzundzhalieva, Gergana Desheva, Dagmar Janovská, Ludmila Papoušková, Miloš Faltus, Miroslav Hýbl, Zdeněk Beneš, Patrizia Vaccino, Theo v. Hintum, Lise Lykke Steffensen, Maja Boczkowska,Pavol Hauptvogel, Ľubomír Mendel, Martin Gálik, Iveta Čičová, Erika Zetochová, Marcela Gubišová, René Hauptvogel, Marek Varga, Luis Guasch, Isaura Martin, Lucía de la Rosa, Beate Schiersc
Pubblicato in: 2024
Editore: ecpgr

Reports of genebank visits

Autori: Ulrike Lohwasser, Pavol Hauptvogel, Theo van Hintum, Dagmar Janovská, Ludmila Papoušková, Iveta Čičová, Katya Uzundzhalieva, Gergana Desheva, Isaura Martin, Luis Guasch, John Dickie, Lise Lykke Steffensen, Beate Schierscher-Viret, Patrizia Vaccino, Maja Boczkowska
Pubblicato in: 2024
Editore: ECPGR