Activated GEnebank NeTwork

Informacje na temat projektu

AGENT

Identyfikator umowy o grant: 862613

DOI

10.3030/862613

Projekt został zamknięty

Data podpisania przez KE 20 Kwietnia 2020

Data rozpoczęcia 1 Maja 2020

Data zakończenia 30 Kwietnia 2025

Finansowanie w ramach

• SOCIETAL CHALLENGES - Food security, sustainable agriculture and forestry, marine, maritime and inland water research, and the bioeconomy

Koszt całkowity

€ 7 258 537,50

Wkład UE

€ 7 199 787,50

Koordynowany przez

LEIBNIZ - INSTITUT FUER PFLANZENGENETIK UND KULTURPFLANZENFORSCHUNG
Germany

CORDIS oferuje możliwość skorzystania z odnośników do publicznie dostępnych publikacji i rezultatów projektów realizowanych w ramach programów ramowych HORYZONT.

Odnośniki do rezultatów i publikacji związanych z poszczególnymi projektami 7PR, a także odnośniki do niektórych konkretnych kategorii wyników, takich jak zbiory danych i oprogramowanie, są dynamicznie pobierane z systemu OpenAIRE .

Rezultaty

Documents, reports (9)

Reports with genebank capacity building recommendations

Reports with genebank capacity building recommendations (M59)

Extended submission format for EURISCO

Extended submission format for EURISCO M36

Use FIGS+ score to define gap analysis for joint collection missions and supporting documents for in situ protection

Use FIGS+ score to define gap analysis for joint collection missions and supporting documents for in situ protection (M58)

Report on genotypic information of ‘bridging collection'

Report on genotypic information of bridging collection M18

VCF file reporting SNP variation of all barley and wheat samples within AGENT

VCF file reporting SNP variation of all barley and wheat samples within AGENT (M42)

Report on genotypic information of ‘precision collections'

Report on genotypic information of ‘precision collections’ (M36)

Final webinar to disseminate knowledge on digital gene banking to the wider community

Final webinar to disseminate knowledge on digital gene banking to the wider community (M60)

Final guidelines for dataflow

Final guidelines for dataflow M18

AGENT integrated data workflow developed and deployed

AGENT integrated data workflow developed and deployed (M48)

Websites, patent fillings, videos etc. (8)

Communication Toolkit

D72Communication Toolkit M7

Public project website

Public project website M4

Assign a FIGS+ score for each trait to all AGENT accessions

Assign a FIGS+ score for each trait to all AGENT accessions (M57)

Discovery and retrieval of genomic and phenotypic data possible through EURISCO and additional search interfaces

Discovery and retrieval of genomic and phenotypic data possible through EURISCO and additional search interfaces M24

Audio-visual material to explain key features of the project

Audio-visual material to explain key features of the project (M48)

Assign haplotype score to all AGENT accessions for QTLs newly discovered or from the literature

Assign haplotype score to all AGENT accessions for QTLs newly discovered or from the literature (M50)

Final release of the AGENT data platform, including tools for data management, analysis, prediction, visualisation and access

Final release of the AGENT data platform, including tools for data management, analysis, prediction, visualisation and access (M60)

Assign genomic estimated breeding values for each trait to all AGENT accessions

Assign genomic estimated breeding values for each trait to all AGENT accessions (M54)

Demonstrators, pilots, prototypes (1)

SNP assay for QC and QM in AGENT gene banks

SNP assay for QC and QM in AGENT gene banks M12

Publikacje

Peer reviewed articles (22)

The German Federal Ex Situ Genebank for Agricultural and Horticultural Crops – Conservation, exploitation and steps towards a bio-digital resource centre

Autorzy: Stephan Weise, Frank R. Blattner, Andreas Börner, Klaus J. Dehmer, Marion Grübe, Dörte Harpke, Ulrike Lohwasser, Markus Oppermann, Nils Stein, Evelin Willner, Manuela Nagel
Opublikowane w: Genetic Resources, 2025, Strona(/y) 91-105, ISSN 2708-3764
Wydawca: Alliance of Bioversity International and CIAT
DOI: 10.46265/genresj.gydy5145

Genomic predictions to leverage phenotypic data across genebanks

Autorzy: El Hanafi S, Jiang Y, Kehel Z, Schulthess AW, Zhao Y, Mascher M, Haupt M, Himmelbach A, Stein N, Amri A and Reif JC
Opublikowane w: Frontiers - Plant Science, 2023, ISSN 1664-462X
Wydawca: Frontiers Media S. A.
DOI: 10.3389/fpls.2023.1227656

Trait-customized sampling of core collections from a winter wheat genebank collection supports association studies

Autorzy: Marcel O. Berkner, Yong Jiang, Jochen C. Reif, Albert W. Schulthess
Opublikowane w: Frontiers in Plant Science, Numer 15, 2024, ISSN 1664-462X
Wydawca: Frontiers Media S. A.
DOI: 10.3389/fpls.2024.1451749

From data to knowledge - big data needs stewardship, a plant phenomics perspective

Autorzy: Arend, Daniel; Psaroudakis, Dennis; Memon, Junaid Altaf; Rey‐Mazón, Elena; Schüler, Danuta; Szymanski, Jedrzej Jakub; Scholz, Uwe; Junker, Astrid; Lange, Matthias
Opublikowane w: The plant journal, 111(2):335-347, Numer vol. 11, No. 2, 2022, ISSN 0960-7412
Wydawca: Blackwell Publishing Inc.
DOI: 10.1111/tpj.15804

BARLEY YIELD RESPONSE TO AGROCLIMATIC INDICES VARIABILITY

Autorzy: Liliana VASILESCU, Eugen PETCU, Alexandrina SÎRBU, Cătălin LAZĂR, Lenuța Iuliana EPURE, Elena PETCU, Lidia CANĂ, Maria TOADER
Opublikowane w: Scientific Papers. Series A. Agronomy, 2022, ISSN 2285-5807
Wydawca: University of Agronomic Sciences and Veterinary Medicine of Bucharest
DOI: 10.5281/zenodo.7139879

Advancing the Conservation and Utilization of Barley Genetic Resources: Insights into Germplasm Management and Breeding for Sustainable Agriculture

Autorzy: Visioni, A.; Basile, B.; Amri, A.; Sanchez-Garcia, M.; Corrado, G.
Opublikowane w: Plants, Numer 2023, 12(18), 2023, Strona(/y) 3186, ISSN 2223-7747
Wydawca: MDPI
DOI: 10.3390/plants12183186

PhenoApp: A mobile tool for plant phenotyping to record field and greenhouse observations

Autorzy: Franco Röckel; Toni Schreiber; Danuta Schüler; Ulrike Braun; Ina Krukenberg; Florian Schwander; Andreas Peil; Christine Brandt; Evelin Willner; Daniel Gransow; Uwe Scholz; Steffen Kecke; Erika Maul; Matthias Lange; Reinhard Töpfer
Opublikowane w: Crossref, Numer 1, 2022, ISSN 2046-1402
Wydawca: F1000 Research Ltd.
DOI: 10.12688/f1000research.74239.1

Curation of historical phenotypic wheat data from the Czech Genebank for research and breeding

Autorzy: Pavel Svoboda, Vojtěch Holubec, Jochen C. Reif, Marcel O. Berkner
Opublikowane w: Scientific Data, Numer 11, 2024, ISSN 2052-4463
Wydawca: Springer Science and Business Media LLC
DOI: 10.1038/s41597-024-03598-1

Recommendations for the formatting of Variant Call Format (VCF) files to make plant genotyping data FAIR

Autorzy: Sebastian Beier; Anne Fiebig; Cyril Pommier; Isuru Liyanage; Matthias Lange; Paul J. Kersey; Stephan Weise; Richard Finkers; Baron Koylass; Timothee Cezard; Mélanie Courtot; Bruno Contreras-Moreira; Guy Naamati; Sarah Dyer; Uwe Scholz
Opublikowane w: F1000Research 11 (2022), Numer 1, 2022, ISSN 2046-1402
Wydawca: F1000 Research Ltd.
DOI: 10.12688/f1000research.109080.2

GRAIN MORPHOMETRY ANALYSIS OF ROMANIAN WINTER BARLEY CULTIVARS REGISTERED DURING 1959-2019 PERIOD

Autorzy: Liliana Vasilescu, Eugen Petcu, Alexandrina Sîrbu, Elena Petcu, Cătălin Lazăr
Opublikowane w: ROMANIAN AGRICULTURAL RESEARCH, 2022, ISSN 2067-5720
Wydawca: National Agricultural Research Institute Fundulea
DOI: 10.5281/zenodo.6962256

PhenoApp: A mobile tool for plant phenotyping to record field and greenhouse observations

Autorzy: Franco Röckel, Toni Schreiber, Danuta Schüler, Ulrike Braun, Ina Krukenberg, Florian Schwander, Andreas Peil, Christine Brandt, Evelin Willner, Daniel Gransow, Uwe Scholz, Steffen Kecke, Erika Maul, Matthias Lange, Reinhard Töpfer
Opublikowane w: F1000Research, Numer 11, 2023, Strona(/y) 12, ISSN 2046-1402
Wydawca: F1000 Research Ltd.
DOI: 10.12688/f1000research.74239.2

Strengthening European research cooperation on plant genetic resources conservation and use

Autorzy: Sandra Goritschnig, Stephan Weise, Filippo Guzzon, Lorenzo Maggioni, Theo Van Hintum, Lise Lykke Steffensen, Nils Stein, Giovanni Giuliano
Opublikowane w: Genetic Resources, 2025, Strona(/y) 119-134, ISSN 2708-3764
Wydawca: Alliance of Bioversity International and CIAT
DOI: 10.46265/genresj.luzj7324

Choosing the right tool: Leveraging of plant genetic resources in wheat (Triticum aestivum L.) benefits from selection of a suitable genomic prediction model

Autorzy: Marcel O. Berkner, Albert W. Schulthess, Yong Jiang, Yusheng Zhao, Markus Oppermann, and Jochen C. Reif
Opublikowane w: Theoretical and Applied Genetics, Numer 194, 2022, ISSN 1432-2242
Wydawca: Springer Science+Business Media
DOI: 10.1007/s00122-022-04227-4

Using Genome-Wide Predictions to Assess the Phenotypic Variation of a Barley (Hordeum sp.) Gene Bank Collection for Important Agronomic Traits and Passport Information

Autorzy: Yong Jiang, Stephan Weise, Andreas Graner, Jochen C. Reif
Opublikowane w: Frontiers in Plant Science, Numer 11, 2021, ISSN 1664-462X
Wydawca: Frontiers Media S. A.
DOI: 10.3389/fpls.2020.604781

Genetic Diversity regarding grain size and shape of common winter wheat

Autorzy: Cristina Mihaela MARINCIU, Gabriela ŞERBAN, Indira GALIT, Vasile MANDEA
Opublikowane w: Scientific Papers Agronomy, 2021, ISSN 2285-5785
Wydawca: University of Agronomic Sciences and Veterinary Medicine of Bucharest

Genebank Peer Reviews: A powerful tool to improve genebank quality and promote collaboration

Autorzy: Theo Van Hintum, Sharon Balding, Gergana Desheva, John Dickie, María José Díez, Luis Guasch, Pavol Hauptvogel, Vojtěch Holubec, Dagmar Janovská, Ulrike Lohwasser, Isaura Martín, Ludmila Papoušková, Beate Schierscher-Viret, Lise Lykke Steffensen, Katya Uzundzhalieva, Patrizia Vaccino, José Vicente Valcárcel
Opublikowane w: Genetic Resources, Numer 6, 2025, Strona(/y) 115-121, ISSN 2708-3764
Wydawca: Alliance of Bioversity International and CIAT
DOI: 10.46265/genresj.oadz7911

Introducing Beneficial Alleles from Plant Genetic Resources into the Wheat Germplasm

Autorzy: Shivali Sharma, Albert W. Schulthess, Filippo M. Bassi, Ekaterina D. Badaeva, Kerstin Neumann, Andreas Graner, Hakan Özkan, Peter Werner, Helmut Knüpffer, Benjamin Kilian
Opublikowane w: Biology, Numer 10/10, 2021, Strona(/y) 982, ISSN 2079-7737
Wydawca: MDPI
DOI: 10.3390/biology10100982

Genomic prediction models trained with historical records enable populating the German ex situ genebank bio-digital resource center of barley (Hordeum sp.) with information on resistances to soilborne barley mosaic viruses

Autorzy: Maria Y. Gonzalez, Yusheng Zhao, Yong Jiang, Nils Stein, Antje Habekuss, Jochen C. Reif, Albert W. Schulthess
Opublikowane w: Theoretical and Applied Genetics, Numer 134/7, 2021, Strona(/y) 2181-2196, ISSN 0040-5752
Wydawca: Springer Verlag
DOI: 10.1007/s00122-021-03815-0

Exploring the legacy of Central European historical winter wheat landraces

Autorzy: András Cseh, Péter Poczai, Tibor Kiss, Krisztina Balla, Zita Berki, Ádám Horváth, Csaba Kuti & Ildikó Karsai
Opublikowane w: Sci Rep, 2021, ISSN 2045-2322
Wydawca: Nature Publishing Group
DOI: 10.1038/s41598-021-03261-4

k-mer-based GWAS in a wheat collection reveals novel and diverse sources of powdery mildew resistance

Autorzy: Benjamin Jaegle, Yoav Voichek, Max Haupt, Alexandros G. Sotiropoulos, Kevin Gauthier, Matthias Heuberger, Esther Jung, Gerhard Herren, Victoria Widrig, Rebecca Leber, Yipu Li, Beate Schierscher, Sarah Serex, Maja Boczkowska, Marta-Puchta Jasińska, Paulina Bolc, Boulos Chalhoub, Nils Stein, Beat Keller, Javier Sánchez-Martín
Opublikowane w: Genome Biology, Numer 26, 2025, ISSN 1474-760X
Wydawca: Springer Science and Business Media LLC
DOI: 10.1186/s13059-025-03645-z

Genomic prediction reveals unexplored variation in grain protein and lysine content across a vast winter wheat genebank collection

Autorzy: Berkner MO, Weise S, Reif JC and Schulthess AW
Opublikowane w: Frontiers - Plant Science (Sec. Plant Breeding ), Numer Volume 14 - 2023, 2024, ISSN 1664-462X
Wydawca: Frontiers Media S. A.
DOI: 10.3389/fpls.2023.1270298

"""On the Way to Plant Data Commons - A Genotyping Use Case"""

Autorzy: Manuel Feser, Patrick König, Anne Fiebig, Daniel Arend, Matthias Lange, Uwe Scholz
Opublikowane w: Journal of Integrative Bioinformatics, 2022, ISSN 1613-4516
Wydawca: Informationsmanagement in der Biotechnologie e.V. (IMBio e.V.)
DOI: 10.1515/jib-2022-0033

Other (2)

Updated genebank manuals available on the ECPGR website

Autorzy: Katya Uzundzhalieva, Gergana Desheva, Dagmar Janovská, Ludmila Papoušková, Miloš Faltus, Miroslav Hýbl, Zdeněk Beneš, Patrizia Vaccino, Theo v. Hintum, Lise Lykke Steffensen, Maja Boczkowska,Pavol Hauptvogel, Ľubomír Mendel, Martin Gálik, Iveta Čičová, Erika Zetochová, Marcela Gubišová, René Hauptvogel, Marek Varga, Luis Guasch, Isaura Martin, Lucía de la Rosa, Beate Schiersc
Opublikowane w: 2024
Wydawca: ecpgr

Reports of genebank visits

Autorzy: Ulrike Lohwasser, Pavol Hauptvogel, Theo van Hintum, Dagmar Janovská, Ludmila Papoušková, Iveta Čičová, Katya Uzundzhalieva, Gergana Desheva, Isaura Martin, Luis Guasch, John Dickie, Lise Lykke Steffensen, Beate Schierscher-Viret, Patrizia Vaccino, Maja Boczkowska
Opublikowane w: 2024
Wydawca: ECPGR