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Pan-genome Graph Algorithms and Data Integration

Resultado final

Communication and dissemination report

Report on dissemination strategies and activities of the network Monitoring and recording of individual dissemination activities

First progress report

First progress report on secondments and scientific and financial aspects of the project

Kick-off meeting report

Description of the overall planning for the Project development, as discussed and agreed during the Kick-Off meeting.

Publicaciones

Elastic-Degenerate String Matching via Fast Matrix Multiplication

Autores: Giulia Bernardini, Paweł Gawrychowski, Nadia Pisanti, Solon P. Pissis, Giovanna Rosone
Publicado en: SIAM Journal on Computing, Issue 51/3, 2022, Page(s) 549-576, ISSN 0097-5397
Editor: Society for Industrial and Applied Mathematics
DOI: 10.1137/20m1368033

Simpler and Faster Development of Tumor Phylogeny Pipelines

Autores: Sarwan Ali, Simone Ciccolella, Lorenzo Lucarella, Gianluca Della Vedova, Murray Patterson
Publicado en: Journal of Computational Biology, Issue 28/11, 2021, Page(s) 1142-1155, ISSN 1066-5277
Editor: Mary Ann Liebert Inc.
DOI: 10.1089/cmb.2021.0271

Systematic Genomic Surveillance of SARS-CoV-2 Virus on Illumina Sequencing Platforms in the Slovak Republic-One Year Experience

Autores: Diana Rusňáková, Tatiana Sedláčková, Peter Radvák, Miroslav Böhmer, Pavol Mišenko, Jaroslav Budiš, Silvia Bokorová, Nikola Lipková, Michaela Forgáčová-Jakúbková, Tomáš Sládeček, Jozef Sitarčík, Werner Krampl, Michaela Gažiová, Anna Kaliňáková, Edita Staroňová, Elena Tichá, Terézia Vrábľová, Lucia Ševčíková, Barbora Kotvasová, Lucia Maďarová, Soňa Feiková
Publicado en: Viruses, Issue 14/11, 2022, ISSN 1999-4915
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v14112432

Finding Maximal Exact Matches Using the r-Index

Autores: Massimiliano Rossi, Marco Oliva, Paola Bonizzoni, Ben Langmead, Travis Gagie, Christina Boucher
Publicado en: Journal of Computational Biology, Issue 29/2, 2022, Page(s) 188-194, ISSN 1066-5277
Editor: Mary Ann Liebert Inc.
DOI: 10.1089/cmb.2021.0445

Automated prediction of the clinical impact of structural copy number variations

Autores: Michaela Gažiová, Tomáš Sládeček, Ondrej Pös, M. Števko, Werner Krampl, Zuzana Pös, Rastislav Hekel, M. Hlavačka, Marcel Kucharík, Jan Radvánszky, Jaroslav Budiš, Tomáš Szemes
Publicado en: Scientific Reports, Issue 12, 2022, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1038/s41598-021-04505-z

MALVIRUS: an integrated application for viral variant analysis

Autores: Simone Ciccolella; Luca Denti; Paola Bonizzoni; Gianluca Della Vedova; Yuri Pirola; Marco Previtali
Publicado en: BMC Bioinformatics, Issue 22, 2021, Page(s) 625, ISSN 1471-2105
Editor: BioMed Central
DOI: 10.1186/s12859-022-04668-0

VirPool: Model-Based Estimation of SARS-CoV-2 Variant Proportions in Wastewater Samples

Autores: Askar Gafurov, Andrej Baláž, Fabian Amman, Kristína Boršová, Viktória Čabanová, Boris Klempa, Andreas Bergthaler, Tomáš Vinař, Broňa Brejová
Publicado en: BMC Bioinformatics, Issue 23, 2022, ISSN 1471-2105
Editor: BioMed Central
DOI: 10.1186/s12859-022-05100-3

IUPACpal: efficient identification of inverted repeats in IUPAC-encoded DNA sequences

Autores: Hayam Alamro, Mai Alzamel, Costas S. Iliopoulos, Solon P. Pissis, Steven Watts
Publicado en: BMC Bioinformatics, Issue 22, 2021, Page(s) 51, ISSN 1471-2105
Editor: BioMed Central
DOI: 10.1186/s12859-021-03983-2

Strainline: Full-length de novo viral haplotype reconstruction from noisy long reads

Autores: Luo, Xiao; Kang, Xiangbin; Schönhuth, Alexander
Publicado en: Genome Biology, 2022, ISSN 1474-760X
Editor: BioMed Central Ltd.
DOI: 10.1186/s13059-021-02587-6

Numeric Lyndon-based feature embedding of sequencing reads for machine learning approaches

Autores: Paola Bonizzoni, Matteo Costantini, Clelia De Felice, Alessia Petescia, Yuri Pirola, Marco Previtali, Raffaella Rizzi, Jens Stoye, Rocco Zaccagnino, Rosalba Zizza
Publicado en: Information Sciences, Issue 607, 2022, Page(s) 458-476, ISSN 0020-0255
Editor: Elsevier BV
DOI: 10.1016/j.ins.2022.06.005

Shark: fishing relevant reads in an RNA-Seq sample

Autores: Luca Denti, Yuri Pirola, Marco Previtali, Tamara Ceccato, Gianluca Della Vedova, Raffaella Rizzi, Paola Bonizzoni
Publicado en: Bioinformatics, Issue 37/4, 2020, Page(s) 464-472, ISSN 1367-4803
Editor: Oxford University Press
DOI: 10.1093/bioinformatics/btaa779

μ-PBWT: a lightweight r-indexing of the PBWT for storing and querying UK Biobank data

Autores: Davide Cozzi, Massimiliano Rossi, Simone Rubinacci, Travis Gagie, Dominik Köppl, Christina Boucher, Paola Bonizzoni
Publicado en: Bioinformatics, 2023, ISSN 1367-4803
Editor: Oxford University Press
DOI: 10.1093/bioinformatics/btad552

Nanopore base calling on the edge

Autores: Peter Perešíni, Vladimír Boža, Broňa Brejová, Tomáš Vinař
Publicado en: Bioinformatics, Issue 37/24, 2021, Page(s) 4661-4667, ISSN 1367-4803
Editor: Oxford University Press
DOI: 10.1093/bioinformatics/btab528

Nanopore sequencing of SARS-CoV-2: Comparison of short and long PCR-tiling amplicon protocols.

Autores: Brona Brejova; Kristína Boršová; Viktória Hodorová; Viktória Čabanová; Askar Gafurov; Dominika Fricova; Martina Neboháčová; Tomas Vinar; Boris Klempa; Jozef Nosek
Publicado en: PLoS ONE, Issue 16, 2021, Page(s) e0259277, ISSN 1932-6203
Editor: Public Library of Science
DOI: 10.1371/journal.pone.0259277

Triplet-based similarity score for fully multi-labeled trees with poly-occurring labels

Autores: Simone Ciccolella, Giulia Bernardini, Luca Denti, Paola Bonizzoni, Marco Previtali, Gianluca Della Vedova
Publicado en: Bioinformatics, Issue 37/2, 2020, Page(s) 178-184, ISSN 1367-4803
Editor: Oxford University Press
DOI: 10.1093/bioinformatics/btaa676

Repurposing non-invasive prenatal testing data: Population study of single nucleotide variants associated with colorectal cancer and Lynch syndrome

Autores: Natalia Forgacova, Juraj Gazdarica, Jaroslav Budiš, Jan Radvanszky, Tomáš Szemes
Publicado en: Oncology Letters, Issue 22/5, 2021, ISSN 1792-1074
Editor: Spandidos Publications
DOI: 10.3892/ol.2021.13040

DNA copy number variation: Main characteristics, evolutionary significance, and pathological aspects

Autores: Ondrej Pös, Jan Radvanszky, Gergely Buglyó, Zuzana Pös, Diana Rusnakova, Bálint Nagy, Tomas Szemes
Publicado en: Biomedical Journal, Issue 44/5, 2021, Page(s) 548-559, ISSN 2319-4170
Editor: Medknow Publications and Media Pvt. Ltd
DOI: 10.1016/j.bj.2021.02.003

Mapping-friendly sequence reductions: Going beyond homopolymer compression

Autores: Luc Blassel, Paul Medvedev, Rayan Chikhi
Publicado en: iScience, Issue 25/11, 2022, ISSN 2589-0042
Editor: Cell Press
DOI: 10.1016/j.isci.2022.105305

Clustering sequence graphs

Autores: Haodi Zhong, Grigorios Loukides, Solon P. Pissis
Publicado en: Data & Knowledge Engineering, Issue 138, 2022, Page(s) 101981, ISSN 0169-023X
Editor: Elsevier BV
DOI: 10.1016/j.datak.2022.101981

Computational graph pangenomics: a tutorial on data structures and their applications

Autores: Jasmijn A. Baaijens, Paola Bonizzoni, Christina Boucher, Gianluca Della Vedova, Yuri Pirola, Raffaella Rizzi, Jouni Sirén
Publicado en: Natural Computing, Issue 21, 2022, Page(s) 81-108, ISSN 1567-7818
Editor: Kluwer Academic Publishers
DOI: 10.1007/s11047-022-09882-6

Bidirectional String Anchors for Improved Text Indexing and Top-K Similarity Search

Autores: Grigorios Loukidis, Solon Pissis, Michelle Sweering
Publicado en: IEEE Transactions on Knowledge and Data Engineering, 2023, Page(s) 1-18, ISSN 1041-4347
Editor: Institute of Electrical and Electronics Engineers
DOI: 10.1109/tkde.2022.3231780

Internal shortest absent word queries in constant time and linear space

Autores: Golnaz Badkobeh, Panagiotis Charalampopoulos, Dmitry Kosolobov, Solon P. Pissis
Publicado en: Theoretical Computer Science, Issue 922, 2020, Page(s) 271-282, ISSN 0304-3975
Editor: Elsevier BV
DOI: 10.1016/j.tcs.2022.04.029

All-pairs suffix/prefix in optimal time using Aho-Corasick space

Autores: Grigorios Loukides, Solon P. Pissis
Publicado en: Information Processing Letters, Issue 178, 2022, Page(s) 106275, ISSN 0020-0190
Editor: Elsevier BV
DOI: 10.1016/j.ipl.2022.106275

Seedability: optimizing alignment parameters for sensitive sequence comparison

Autores: Lorraine A. K. Ayad, Rayan Chikhi, Solon P. Pissis
Publicado en: Bioinformatics Advances, Issue 3, 2023, ISSN 2635-0041
Editor: Oxford University Press (OUP)
DOI: 10.1093/bioadv/vbad108

SVDSS: structural variation discovery in hard-to-call genomic regions using sample-specific strings from accurate long reads

Autores: Luca Denti, Parsoa Khorsand, Paola Bonizzoni, Fereydoun Hormozdiari, Rayan Chikhi
Publicado en: Nature Methods, Issue 20, 2022, Page(s) 550-558, ISSN 1548-7091
Editor: Nature Publishing Group
DOI: 10.1038/s41592-022-01674-1

DeepNano-blitz: a fast base caller for MinION nanopore sequencers

Autores: Vladimír Boža, Peter Perešíni, Broňa Brejová, Tomáš Vinař
Publicado en: Bioinformatics, Issue 36/14, 2020, Page(s) 4191–4192, ISSN 1367-4811
Editor: Oxford University Press
DOI: 10.1093/bioinformatics/btaa297

Accurate and fast clade assignment via deep learning and frequency chaos game representation

Autores: Jorge Avila Cartes, Santosh Anand, Simone Ciccolella, Paola Bonizzoni, Gianluca Della Vedova
Publicado en: Gigascience, Issue 12, 2022, ISSN 2047-217X
Editor: Oxford University Press
DOI: 10.1093/gigascience/giac119

phasebook: haplotype-aware de novo assembly of diploid genomes from long reads

Autores: Xiao Luo; Xiao Luo; Xiongbin Kang; Xiongbin Kang; Alexander Schönhuth; Alexander Schönhuth
Publicado en: Genome Biology, Issue 22, 2021, Page(s) 299, ISSN 1474-760X
Editor: BioMed Central
DOI: 10.1186/s13059-021-02512-x

Enhancing Long-Read-Based Strain-Aware Metagenome Assembly

Autores: Xiao Luo, Xiongbin Kang, Alexander Schönhuth
Publicado en: Frontiers in Genetics, Issue 13, 2022, ISSN 1664-8021
Editor: Frontiers Media
DOI: 10.3389/fgene.2022.868280

Sequence-based pangenomic core detection

Autores: Tizian Schulz, Roland Wittler, Jens Stoye
Publicado en: IScience, Issue 25/6, 2022, ISSN 2589-0042
Editor: Cell Press
DOI: 10.1016/j.isci.2022.104413

StrainXpress: strain aware metagenome assembly from short reads

Autores: Xiongbin Kang, Xiao Luo, Alexander Schönhuth
Publicado en: Nucleic Acids Research, Issue 50/17, 2022, Page(s) e101, ISSN 0305-1048
Editor: Oxford University Press
DOI: 10.1093/nar/gkac543

Efficient Computation of Sequence Mappability

Autores: Panagiotis Charalampopoulos; Costas S. Iliopoulos; Tomasz Kociumaka; Solon P. Pissis; Jakub Radoszewski; Juliusz Straszyński
Publicado en: Algorithmica, Issue 84, 2022, Page(s) 1418-1440, ISSN 0178-4617
Editor: Springer Verlag
DOI: 10.1007/s00453-022-00934-y

Detecting High Scoring Local Alignments in Pangenome Graphs

Autores: Tizian Schulz; Roland Wittler; Sven Rahmann; Faraz Hach; Faraz Hach; Jens Stoye
Publicado en: Bioinformatics, Issue 37, 2021, Page(s) 2266–2274, ISSN 1367-4803
Editor: Oxford University Press
DOI: 10.1101/2020.09.03.280958

VeChat: correcting errors in long reads using variation graphs

Autores: Xiao Luo, Xiongbin Kang, Alexander Schönhuth
Publicado en: Nature Communications, Issue 13, 2022, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-022-34381-8

Dynamic Pooling Improves Nanopore Base Calling Accuracy

Autores: Vladimír Boža, Peter Perešíni, Broňa Brejová, Tomáš Vinař
Publicado en: IEEE/ACM Transactions on Computational Biology and Bioinformatics, Issue 19/6, 2022, Page(s) 3416-3424, ISSN 1545-5963
Editor: IEEE Computer Society
DOI: 10.1109/tcbb.2021.3128366

Computing the multi-string BWT and LCP array in external memory

Autores: Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi
Publicado en: Theoretical Computer Science, Issue 862, 2021, Page(s) 42-58, ISSN 0304-3975
Editor: Elsevier BV
DOI: 10.1016/j.tcs.2020.11.041

Palidis: fast discovery of novel insertion sequences

Autores: Victoria R. Carr, Solon P. Pissis​, Peter Mullany​, Saeed Shoaie​, David Gomez-Cabrero​, David L. Moyes
Publicado en: Microbial Genomics, Issue 9/3, 2023, ISSN 2057-5858
Editor: Microbiology Society
DOI: 10.1099/mgen.0.000917

Three Metaheuristic Approaches for Tumor Phylogeny Inference: An Experimental Comparison

Autores: Simone Ciccolella; Gianluca Della Vedova; Vladimir Filipović; Mauricio Soto Gomez
Publicado en: Algorithms, 2023, ISSN 1999-4893
Editor: MDPI Open Access Publishing
DOI: 10.3390/a16070333

Text Indexing for Long Patterns: Anchors are All you Need

Autores: Lorraine A. K. Ayad, Grigorios Loukides, Solon P. Pissis
Publicado en: Proceedings of the VLDB Endowment, Issue 16(9), 2023, Page(s) 2117-2131, ISSN 2150-8097
Editor: Association for Computing Machinery (ACM)
DOI: 10.14778/3598581.3598586

Comparative genome analysis using sample-specific string detection in accurate long reads

Autores: Parsoa Khorsand; Luca Denti; Paola Bonizzoni; Rayan Chikhi; Fereydoun Hormozdiari; Fereydoun Hormozdiari
Publicado en: Bioinformatics Advances, Issue 1, 2021, ISSN 2635-0041
Editor: Oxford University Press (OUP)
DOI: 10.1093/bioadv/vbab005

Markov chains improve the significance computation of overlapping genome annotations

Autores: Askar Gafurov, Broňa Brejová, Paul Medvedev
Publicado en: Bioinformatics, Issue 38, 2022, Page(s) i203–i211, ISSN 1367-4811
Editor: Oxford University Press
DOI: 10.1093/bioinformatics/btac255

Minimizer-space de Bruijn graphs: Whole-genome assembly of long reads in minutes on a personal computer

Autores: Barış Ekim, Bonnie Berger, Rayan Chikhi
Publicado en: Cell Systems, Issue 12/10, 2021, Page(s) 958--968, ISSN 2405-4720
Editor: Elsevier
DOI: 10.1016/j.cels.2021.08.009

Microsatellite instability assessment is instrumental for Predictive, Preventive and Personalised Medicine: status quo and outlook

Autores: Jakub Styk, Zuzana Pös, Ondrej Pös, Jan Radvanszky, Evelina Hrckova Turnova, Gergely Buglyó, Daniela Klimova, Jaroslav Budis, Vanda Repiska, Bálint Nagy, Tomas Szemes
Publicado en: The EPMA Journal, 2023, ISSN 1878-5085
Editor: Springer Science and Business Media LLC
DOI: 10.1007/s13167-023-00312-w

A SARS-CoV-2 mutant from B.1.258 lineage with ∆H69/∆V70 deletion in the Spike protein circulating in Central Europe in the fall 2020.

Autores: Broňa Brejová; Kristína Boršová; Kristína Boršová; Viktória Hodorová; Viktória Čabanová; Lenka Reizigová; Evan D. Paul; Pavol Čekan; Boris Klempa; Jozef Nosek; Tomáš Vinař
Publicado en: Virus Genes, Issue 57, 2021, Page(s) 556–560, ISSN 1572-994X
Editor: Springer Science and Business Media LLC
DOI: 10.1007/s11262-021-01866-5

Elastic-Degenerate String Matching with 1 Error

Autores: Giulia Bernardini, Esteban Gabory, Solon P. Pissis, Leen Stougie, Michelle Sweering, Wiktor Zuba
Publicado en: Latin American Symposium on Theoretical Informatics (LATIN 2022), Issue 13568, 2022, Page(s) 20-37, ISBN 978-3-031-20623-8
Editor: Springer
DOI: 10.1007/978-3-031-20624-5_2

KFinger: Capturing Overlaps Between Long Reads by Using Lyndon Fingerprints

Autores: Paola Bonizzoni, Alessia Petescia, Yuri Pirola, Raffaella Rizzi, Rocco Zaccagnino, Rosalba Zizza
Publicado en: International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO 2022), 2022, ISBN 978-3-031-07801-9
Editor: Springer
DOI: 10.1007/978-3-031-07802-6_37

On Strings Having the Same Length-k Substrings

Autores: Giulia Bernardini, Alessio Conte, Esteban Gabory, Roberto Grossi, Grigorios Loukides, Solon P. Pissis, Giulia Punzi, Michelle Sweering
Publicado en: Combinatorial Pattern Matching (CPM 2022), Issue 223, 2022, Page(s) 16:1--16:17, ISBN 978-3-95977-234-1
Editor: Schloss Dagstuhl -- Leibniz-Zentrum für Informatik
DOI: 10.4230/lipics.cpm.2022.16

Can Formal Languages Help Pangenomics to Represent and Analyze Multiple Genomes?

Autores: Paola Bonizzoni, Clelia De Felice, Yuri Pirola, Raffaella Rizzi, Rocco Zaccagnino, Rosalba Zizza
Publicado en: Developments in Language Theory (DLT 2022), Issue 13257, 2022, Page(s) 3-12, ISBN 978-3-031-05578-2
Editor: Springer International Publishing
DOI: 10.1007/978-3-031-05578-2_1

Can We Replace Reads by Numeric Signatures? Lyndon Fingerprints as Representations of Sequencing Reads for Machine Learning

Autores: Paola Bonizzoni, Clelia De Felice, Alessia Petescia, Yuri Pirola, Raffaella Rizzi, Jens Stoye, Rocco Zaccagnino, Rosalba Zizza
Publicado en: Algorithms for Computational Biology (AlCoB 2021), 2021, Page(s) 16-28, ISBN 978-3-030-74432-8
Editor: Springer
DOI: 10.1007/978-3-030-74432-8_2

Approximate Circular Pattern Matching

Autores: Panagiotis Charalampopoulos, Tomasz Kociumaka, Jakub Radoszewski, Solon P. Pissis, Wojciech Rytter, Tomasz Waleń, Wiktor Zuba
Publicado en: European Symposium on Algorithms (ESA 2022), Issue 244, 2022, Page(s) 35:1--35:19, ISBN 978-3-95977-247-1
Editor: Schloss Dagstuhl -- Leibniz-Zentrum für Informatik
DOI: 10.4230/lipics.esa.2022.35

Unary Words Have the Smallest Levenshtein k-Neighbourhoods

Autores: Panagiotis Charalampopoulos, Solon P. Pissis, Jakub Radoszewski, Tomasz Waleń, Wiktor Zuba
Publicado en: Combinatorial Pattern Matching (CPM 2020), Issue 161, 2020, Page(s) 10:1--10:12, ISBN 978-3-95977-149-8
Editor: Schloss Dagstuhl -- Leibniz-Zentrum für Informatik
DOI: 10.4230/lipics.cpm.2020.10

String Sanitization Under Edit Distance

Autores: Giulia Bernardini, Grigorios Loukides, Solon P. Pissis, Michelle Sweering, Huiping Chen, Nadia Pisanti, Leen Stougie
Publicado en: Combinatorial Pattern Matching (CPM 2020), Issue 161, 2020, Page(s) 7:1--7:14, ISBN 978-3-95977-149-8
Editor: Schloss Dagstuhl -- Leibniz-Zentrum für Informatik
DOI: 10.4230/lipics.cpm.2020.7

Comparing Elastic-Degenerate Strings: Algorithms, Lower Bounds, and Applications

Autores: Esteban Gabory, Moses Njagi Mwaniki, Nadia Pisanti, Solon P. Pissis, Jakub Radoszewski, Michelle Sweering, Wiktor Zuba
Publicado en: Combinatorial Pattern Matching (CPM 2023), Issue 259, 2023, Page(s) 11:1-11:20, ISBN 978-3-95977-276-1
Editor: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
DOI: 10.4230/lipics.cpm.2023.11

Faster Algorithms for Longest Common Substring

Autores: Panagiotis Charalampopoulos, Tomasz Kociumaka, Solon P. Pissis, Jakub Radoszewski
Publicado en: European Symposium on Algorithms (ESA 2021), Issue 204, 2021, Page(s) 30:1--30:17, ISBN 978-3-95977-204-4
Editor: Schloss Dagstuhl -- Leibniz-Zentrum für Informatik
DOI: 10.4230/lipics.esa.2021.30

Beyond the BEST Theorem: Fast Assessment of Eulerian Trails

Autores: Alessio Conte, Roberto Grossi, Grigorios Loukidis, Nadia Pisanti, Solon P. Pissis, Giulia Punzi
Publicado en: Fundamentals of Computation Theory (FCT 2021), Issue 12867, 2021, Page(s) 162--175, ISBN 978-3-030-86593-1
Editor: Springer International Publishing
DOI: 10.1007/978-3-030-86593-1_11

Suffix-Prefix Queries on a Dictionary

Autores: Grigorios Loukides, Solon P. Pissis, Sharma V. Thankachan, Wiktor Zuba
Publicado en: Combinatorial Pattern Matching (CPM 2023), Issue 259, 2023, Page(s) 21:1-21:20, ISBN 978-3-95977-276-1
Editor: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
DOI: 10.4230/lipics.cpm.2023.21

Making de Bruijn Graphs Eulerian

Autores: Giulia Bernardini, Huiping Chen, Grigorios Loukides, Solon P. Pissis, Leen Stougie, Michelle Sweering
Publicado en: Combinatorial Pattern Matching (CPM 2022), Issue 223, 2022, Page(s) 12:1--12:18, ISBN 978-3-95977-234-1
Editor: Schloss Dagstuhl -- Leibniz-Zentrum für Informatik
DOI: 10.4230/lipics.cpm.2022.12

Probabilistic Models of k-mer Frequencies (Extended Abstract)

Autores: Askar Gafurov, Tomáš Vinař, Broňa Brejová
Publicado en: Conference on Computability in Europe (CiE 2021), 2021, Page(s) 227-236, ISBN 978-3-030-80049-9
Editor: Springer
DOI: 10.1007/978-3-030-80049-9_21

Bidirectional String Anchors: A New String Sampling Mechanism

Autores: Grigorios Loukides, Solon P. Pissis
Publicado en: European Symposium on Algorithms (ESA 2021), Issue 204, 2021, Page(s) 64:1--64:21, ISBN 978-3-95977-204-4
Editor: Schloss Dagstuhl -- Leibniz-Zentrum für Informatik
DOI: 10.4230/lipics.esa.2021.64

Longest Palindromic Substring in Sublinear Time

Autores: Panagiotis Charalampopoulos, Solon P. Pissis, Jakub Radoszewski
Publicado en: Combinatorial Pattern Matching (CPM 2022), Issue 223, 2022, Page(s) 20:1--20:9, ISBN 978-3-95977-234-1
Editor: Schloss Dagstuhl -- Leibniz-Zentrum für Informatik
DOI: 10.4230/lipics.cpm.2022.20

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