Next Generation Taxonomy: Ciliophora and their bacterial symbionts as a proof of concept

Risultati finali

Winter/summer schools’ / training workshops’ report. An updated version will be provided at month 61.

List of ciliate strains/species on which the multidisciplinary characterization of bacterial symbionts has been performed

List of ciliate strainsspecies on which the multidisciplinary characterization of bacterial symbionts has been performed An updated version will be provided at month 61

Midterm meeting report

Management meeting report

Kick-off meeting report

Kickoff meeting report

First progress report

Report on dissemination activity public engagement activities exploitation strategy and secondments

List of the different kind of sequences deposited in online databases

List of the different kind of sequences mitogenome symbiont genome transcriptome deposited in online databases eg GenBank An updated version will be provided at month 61

Pubblicazioni

Morphological plasticity and species determination: A case study from Pseudokeronopsis erythrina Chen et al. 2011 (Ciliophora, Hypotrichia, Urostylida). [POSTER]

Autori: Xu W., Gammuto L., Modeo L., Serra V., Luo X., Petroni G.
Pubblicato in: IX European Congress of Protistology (ECOP) & annual Congress of the International Society of Protistologists (ISOP), 2023
Editore: International Society of Protistologists (ISOP)

Contributions to the mobilid genus Leiotrocha Fabre-Domergue, 1888. [COMMUNICATION]

Autori: de Jager G., Serra V., Gammuto L.; Basson L., Petroni G.
Pubblicato in: IX European Congress of Protistology (ECOP) & annual Congress of the International Society of Protistologists (ISOP), 2023
Editore: International Society of Protistologists (ISOP)

Next generation taxonomy of a novel predatory ciliate of the genus Lacrymaria (Alveolata, Ciliophora): the importance of in-depth descriptions of unicellular organisms [COMMUNICATION]

Autori: Serra V., Allievi A., Gammuto L., Fokin S.I., Petroni G., Modeo L.
Pubblicato in: 82° Congresso dell'Unione Zoologica Italiana (UZI), 2023
Editore: Unione Zoologica Italiana (UZI)

A new litostomatean (Ciliophora) species from Tuscany, described according to the standards of Next Generation Taxonomy. [COMMUNICATION]

Autori: Allievi A., Gammuto L., Fokin S.I., Petroni G., Modeo L. Serra V.
Pubblicato in: IX European Congress of Protistology (ECOP) & annual Congress of the International Society of Protistologists (ISOP), 2023
Editore: International Society of Protistologists (ISOP)

Holospora-like bacteria “Candidatus Gortzia yakutica” and Preeria caryophila: New data on ultrastructure, biogeography and host specificity of the symbionts. [COMMUNICATION]

Autori: Fokin S.I., Lebedeva N., Potekhin A.; Gammuto L., Petroni G., Serra V.
Pubblicato in: IX European Congress of Protistology (ECOP) & annual Congress of the International Society of Protistologists (ISOP), 2023
Editore: International Society of Protistologists (ISOP)

Next Generation Taxonomy of a novel predatory ciliate of the genus Lacrymaria (Alveolata, Ciliophora) [COMMUNICATION]

Autori: Serra V., Allievi A., Gammuto L., Fokin S.I., Petroni G., Modeo L.
Pubblicato in: 4° International Symposium on Ciliate Biology with 8° International Conference of Indian Network for Soil Contamination Research, 2024
Editore: Indian Network for Soil Contamination Research

Evolutionary origins and diversification of the association with eukaryotes and the intracellular condition among the Rickettsiales.[COMMUNICATION]

Autori: Castelli M., Nardi T., Gammuto L., Bellinzona G., Sabaneyeva E., Potekhin A., Serra V., Petroni G., Sassera D.
Pubblicato in: IX European Congress of Protistology (ECOP) & annual Congress of the International Society of Protistologists (ISOP), 2023
Editore: International Society of Protistologists (ISOP)

Integrative taxonomic data exploring ciliate diversity and community structure in Rift Valley and marine aquatic ecosystems of Kenya and Lake Mondsee in Austria. [COMMUNICATION]

Autori: Owuor M., Serra V., Pröschold T., Sonntag B., Ong’ondo G.
Pubblicato in: IX European Congress of Protistology (ECOP) & annual Congress of the International Society of Protistologists (ISOP), 2023
Editore: International Society of Protistologists (ISOP)

Host association and intracellularity evolved multiple times independently in the Rickettsiales [POSTER]

Autori: Sassera D.
Pubblicato in: Gordon Research Conference, 2023
Editore: Gordon Research Conference

Multidisciplinary characterization of a novel ciliate endosymbiont: “Candidatus Pinguicoccus supinus” a verrucomicrobial species with highly reduced genome. [COMMUNICATION]

Autori: Gammuto L., Serra V., Nitla V., Castelli M., Lanzoni O., Sassera D., Bandi C., Sandeep B.V., Modeo L., Petroni G.
Pubblicato in: VIII European Congress of Protistology (ECOP) joint International Society of Protistologists (ISOP), 2019
Editore: International Society of Protistologists (ISOP)

Polycycla (Poljansky, 1951) mobilines from South African holothurian hosts. [POSTER]

Autori: de Jager G., Serra V., Gammuto L.; Basson L., Petroni G.
Pubblicato in: IX European Congress of Protistology (ECOP) & annual Congress of the International Society of Protistologists (ISOP), 2023
Editore: International Society of Protistologists (ISOP)

Integrating traditional descriptions with the holobiont concept and genomics analyses in the “next generation taxonomy” approach: Euplotes vanleeuwenhoeki sp. nov. as case study. [COMMUNICATION]

Autori: Serra V., Gammuto L., Nitla V., Castelli M., Lanzoni O., Sassera D., Bandi C., Sandeep B.V., Modeo L., Petroni G.
Pubblicato in: VIII European Congress of Protistology (ECOP) joint International Society of Protistologists (ISOP), 2019
Editore: International Society of Protistologists (ISOP)

“Next Generation Taxonomy: Ciliophora and their bacterial symbionts as a proof of concept (Acronym: NGTax)”. The project, the rationale behind, and practical applications [COMMUNICATION]

Autori: Serra V.
Pubblicato in: 3° International Symposium on Ciliate Biology with 7° International Conference of Indian Network for Soil Contamination Research, 2022
Editore: Indian Network for Soil Contamination Research

Preliminary morphological and molecular analyses on free-living ciliates from South Africa. [POSTER]

Autori: Lenti A., Allievi A., Serra V., Petroni G.
Pubblicato in: IX European Congress of Protistology (ECOP) & annual Congress of the International Society of Protistologists (ISOP), 2023
Editore: International Society of Protistologists (ISOP)

Multidisciplinary characterization of a novel ciliate endosymbiont: “Candidatus Pinguicoccus supinus” a verrucomicrobial species with highly reduced genome. [POSTER]

Autori: Gammuto L., Serra V., Nitla V., Castelli M., Lanzoni O., Sassera D., Bandi C., Sandeep B.V., Modeo L., Petroni G.
Pubblicato in: 80° Congresso dell'Unione Zoologica Italiana (UZI), 2019
Editore: Unione Zoologica Italiana (UZI)

Host association and intracellularity evolved multiple times independently in the Rickettsiales [POSTER]

Autori: Castelli M.
Pubblicato in: Society for Molecular Biology & Evolution Conference (SMBE23), 2023
Editore: Society for Molecular Biology & Evolution

Identification and analysis of cilia-associated gene families in Euplotes amieti (Ciliophora, Hypotrichida) [POSTER]

Autori: Shen L., Sheng X., Gammuto L., Petroni G.; Xiong, X., Wu, J., Serra V.
Pubblicato in: IX European Congress of Protistology (ECOP) & annual Congress of the International Society of Protistologists (ISOP), 2023
Editore: International Society of Protistologists (ISOP)

Can traditional descriptions integrate with the holobiont concept and genomics analyses? The “Next Generation Taxonomy” approach and the characterization of the ciliate Euplotes vanleeuwenhoeki sp. nov. and its bacterial endosymbiont with highly reduced genome as a case study. [POSTER]

Autori: Serra V., Gammuto L., Nitla V., Castelli M., Lanzoni O., Sassera D., Bandi C., Sandeep B.V., Petroni G., Modeo L.
Pubblicato in: 80° Congresso dell'Unione Zoologica Italiana (UZI), 2024
Editore: Unione Zoologica Italiana (UZI)

Biodiversity and genomic evolution of bacterial symbionts in Ciliophora: an overview through selected examples [COMMUNICATION]

Autori: Petroni G.
Pubblicato in: EMBO The European Molecular Biology Organization Workshop, 2022
Editore: EMBO

“Next Generation Taxonomy: Ciliophora and their bacterial symbionts as a proof of concept (Acronym: NGTax)”. The project, the rationale behind, and practical applications [COMMUNICATION]

Autori: Petroni G., Gammuto L., Serra V.
Pubblicato in: 33° Congresso della Società Italiana di Protistologia onlus (SIP), 2022
Editore: Società Italiana di Protistologia onlus

Multidisciplinary characterization of the new species Copemetopus mystakophoros and its symbionts with a proposal for the new class Copemetopea (Alveolata: Ciliophora)

Autori: Sergei I Fokin, Valentina Serra, Leandro Gammuto, Alessandro Allievi, Giulio Petroni, Letizia Modeo
Pubblicato in: Zoological Journal of the Linnean Society, 2023, ISSN 0024-4082
Editore: Blackwell Publishing Inc.
DOI: 10.1093/zoolinnean/zlac114

The neotypification of Frontonia vernalis (Ehrenberg, 1833) Ehrenberg, 1838 and the description of Frontonia paravernalis sp. nov. trigger a critical revision of frontoniid systematics

Autori: Valentina Serra; Aldo D’Alessandro; Venkatamahesh Nitla; Leandro Gammuto; Letizia Modeo; Giulio Petroni; Sergei I. Fokin
Pubblicato in: BMC Zoology 6(1) 4, Numero 4, 2021, ISSN 2056-3132
Editore: Springer Nature
DOI: 10.1186/s40850-021-00067-9

'Candidatus Sarmatiella mevalonica' endosymbiont of the ciliate Paramecium provides insights on evolutionary plasticity among Rickettsiales

Autori: Michele Castelli, Olivia Lanzoni, Tiago Nardi, Stefano Lometto, Letizia Modeo, Alexey Potekhin, Davide Sassera, Giulio Petroni
Pubblicato in: Environmental Microbiology, Numero 23(3), 2021, Pagina/e 1684-1701, ISSN 1462-2920
Editore: John Wiley & Sons Ltd
DOI: 10.1111/1462-2920.15396

'Candidatus Gromoviella agglomerans', a novel intracellular Holosporaceae parasite of the ciliate Paramecium showing marked genome reduction.

Autori: Michele Castelli; Olivia Lanzoni; Olivia Lanzoni; Michele Giovannini; Natalia Lebedeva; Leandro Gammuto; Davide Sassera; Maksim Melekhin; Alexey Potekhin; Sergei I. Fokin; Sergei I. Fokin; Giulio Petroni
Pubblicato in: Environmental microbiology reports, Numero 1, 2022, ISSN 1758-2229
Editore: Wiley-Blackwell
DOI: 10.1111/1758-2229.13021

Host association and intracellularity evolved multiple times independently in the<i>Rickettsiales</i>

Autori: Michele Castelli; Tiago Nardi; Leandro Gammuto; Greta Bellinzona; Elena Sabaneyeva; Alexey Potekhin; Valentina Serra; Giulio Petroni; Davide Sassera
Pubblicato in: Nature Communication, Numero 2, 2024, ISSN 2041-1723
Editore: Nature Publishing Group
DOI: 10.1101/2022.10.13.511287

Molecular phylogeny and taxonomy of four <i>Remanella</i> species (Protozoa, Ciliophora): A flagship genus of karyorelictean ciliates, with descriptions of two new species

Autori: Ming-Zhen Ma; Yu-Jie Liu; Yuan Xu; Bo-Rong Lu; Yu-Qing Li; Saleh A. AL-Farraj; Giulio Petroni; Wei-Bo Song; Ying Yan
Pubblicato in: Zoological Research, Numero 2, 2022, ISSN 2095-8137
Editore: Kunming Institute of Zoology
DOI: 10.24272/j.issn.2095-8137.2022.014

Phylogeny of Neobursaridium reshapes the systematics of Paramecium (Oligohymenophorea, Ciliophora)

Autori: Valentina Serra; Sergei I. Fokin; Sergei I. Fokin; Sergei I. Fokin; Leandro Gammuto; Venkatamahesh Nitla; Michele Castelli; Charan Kumar Basuri; Adireddy Satyaveni; Bhagavatula Venkata Sandeep; Letizia Modeo; Giulio Petroni
Pubblicato in: Zoologica Scripta, Numero 1, 2020, ISSN 1463-6409
Editore: Wiley
DOI: 10.1111/zsc.12464

Morphology and phylogeny of four trachelocercid ciliates (Ciliophora, Karyorelictea, Trachelocercidae) from North China Sea, with description of a new species

Autori: Ye, T., Song, W., Li, Y., Al-Rasheid, K., Serra, V., & Ma, M.
Pubblicato in: European Journal of Protistology, 2023, ISSN 0932-4739
Editore: Elsevier BV
DOI: 10.1016/j.ejop.2023.126025

Bacterial symbiosis in ciliates (Alveolata, Ciliophora): Roads traveled and those still to be taken

Autori: Sergei I. Fokin; Valentina Serra
Pubblicato in: Journal of Eukaryotic Microbiology, Numero 2, 2022, ISSN 1550-7408
Editore: John Wiley & Sons, Inc.
DOI: 10.1111/jeu.12886

Holospora-like bacteria “Candidatus Gortzia yakutica” and Preeria caryophila: ultrastructure, promiscuity, and biogeography of the symbionts.

Autori: Fokin, S. I., Lebedeva, N. A., Potekhin, A., Gammuto, L., Petroni, G., & Serra, V. (2023).
Pubblicato in: European Journal of Protistology, 2023, ISSN 0932-4739
Editore: Elsevier BV
DOI: 10.1016/j.ejop.2023.125998

The obligate symbiont “Candidatus Megaira polyxenophila” has variable effects on the growth of different host species

Autori: Pasqualetti, C., Szokoli, F., Rindi, L., Petroni, G., & Schrallhammer, M.
Pubblicato in: Frontiers in Microbiology, 2020, ISSN 1664-302X
Editore: Frontiers Media
DOI: 10.3389/fmicb.2020.01425

Characterization of a Pseudokeronopsis Strain (Ciliophora, Urostylida) and Its Bacterial Endosymbiont “Candidatus Trichorickettsia”(Alphaproteobacteria, Rickettsiales)

Autori: Castelli, M., Serra, V., Gammuto, L., Senra, M. V., Modeo, L., & Petroni, G.
Pubblicato in: Diversity, 2022, ISSN 1424-2818
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/d14121032

Cryptic diversity in Paramecium multimicronucleatum revealed with a polyphasic approach

Autori: Melekhin, M., Yakovleva, Y., Lebedeva, N., Nekrasova, I., Nikitashina, L., Castelli, M., Mayén-Estrada, R., Romanovich, E.A., Petroni, G., & Potekhin, A.
Pubblicato in: Microorganisms, 2022, ISSN 2076-2607
Editore: MDPI
DOI: 10.3390/microorganisms10050974

Algal diversity in Paramecium bursaria: species identification, detection of Choricystis parasitica, and assessment of the interaction specificity.

Autori: Flemming, F. E., Potekhin, A., Pröschold, T., & Schrallhammer, M.
Pubblicato in: Diversity, 2020, ISSN 1424-2818
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/d12080287

"Morphology, ultrastructure, genomics, and phylogeny of Euplotes vanleeuwenhoeki sp. nov. and its ultra-reduced endosymbiont ""Candidatus Pinguicoccus supinus"" sp. nov"

Autori: Valentina Serra; Leandro Gammuto; Venkatamahesh Nitla; Michele Castelli; Michele Castelli; Olivia Lanzoni; Davide Sassera; Claudio Bandi; Bhagavatula Venkata Sandeep; Franco Verni; Letizia Modeo; Giulio Petroni
Pubblicato in: Scientific Reports, Vol 10, Iss 1, Pp 1-27 (2020), Numero 2, 2020, ISSN 2045-2322
Editore: Nature Publishing Group
DOI: 10.1038/s41598-020-76348-z

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