Publications Non-peer reviewed articles (1) SARS-CoV-2 and Type 1 Diabetes in Finnish Children Author(s): Knip M, Parviainen A, Turtinen M, But A, Härkönen T, Hepojoki J, Sironen T, Iheozor-Ejiofor R, Uğurlu H, Saksela K, Lempainen J, Ilonen J, Vapalahti O, Register FPD Published in: Social Science Research Network, 2022, ISSN 1556-5068 Publisher: Elsevier DOI: 10.2139/ssrn.4237744 Peer reviewed articles (117) SARS-CoV-2 infections among healthcare workers at Helsinki University Hospital, Finland, spring 2020: Serosurvey, symptoms and risk factors Author(s): Anu Kantele, Tinja Lääveri, Lauri Kareinen, Sari H. Pakkanen, Karin Blomgren, Sointu Mero, Anu Patjas, Jenni Virtanen, Ruut Uusitalo, Maija Lappalainen, Asko Järvinen, Satu Kurkela, Anne J. Jääskeläinen, Olli Vapalahti, Tarja Sironen Published in: Travel Medicine and Infectious Disease, Issue 39, 2021, ISSN 1477-8939 Publisher: Elsevier BV DOI: 10.1016/j.tmaid.2020.101949 Canine Saliva as a Possible Source of Antimicrobial Resistance Genes Author(s): Adrienn Gréta Tóth, Imre Tóth, Bernadett Rózsa, Attila Dubecz, Árpád V. Patai, Tibor Németh, Selçuk Kaplan, Eszter Gabriella Kovács, László Makrai, Norbert Solymosi Published in: Antibiotics, Issue 11/11, 2022, ISSN 2078-2489 Publisher: Multidisciplinary Digital Publishing Institute (MDPI) DOI: 10.3390/antibiotics11111490 Impact of antigenic evolution and original antigenic sin on SARS-CoV-2 immunity Author(s): Muriel Aguilar-Bretones, Ron Am Fouchier, Marion Pg Koopmans, Gijsbert P van Nierop Published in: The Journal of Clinical Investigation, Issue 133/1, 2023, ISSN 0021-9738 Publisher: American Society for Clinical Investigation DOI: 10.1172/jci162192 Rise and fall of SARS-CoV-2 variants in Rotterdam: Comparison of wastewater and clinical surveillance Author(s): Ray W Izquierdo-Lara, Leo Heijnen, Bas B Oude Munnink, Claudia M E Schapendonk, Goffe Elsinga, Jeroen Langeveld, Johan Post, Divyae K Prasad, Christian Carrizosa, Frederic Been, Janko van Beek, Remy Schilperoort, Rianne Vriend, Ewout Fanoy, Evelien I T de Schepper, Reina S Sikkema, Richard Molenkamp, Frank M Aarestrup, Gertjan Medema, Marion P G Koopmans and Miranda de Graaf Published in: Science of the Total Environment, Issue 873, 2023, ISSN 0048-9697 Publisher: Elsevier BV DOI: 10.1016/j.scitotenv.2023.162209 Case Report: The Carotid Body in COVID-19: Histopathological and Virological Analyses of an Autopsy Case Series Author(s): Andrea Porzionato, Aron Emmi, Martina Contran, Elena Stocco, Silvia Riccetti, Alessandro Sinigaglia, Veronica Macchi, Luisa Barzon and Raffaele De Caro Published in: Frontiers in Immunology, Issue 12, 2021, ISSN 1664-3224 Publisher: Frontiers Media SA DOI: 10.3389/fimmu.2021.736529 Has Epizootic Become Enzootic? Evidence for a Fundamental Change in the Infection Dynamics of Highly Pathogenic Avian Influenza in Europe, 2021 Author(s): Anne Pohlmann, Jacqueline King, Alice Fusaro, Bianca Zecchin, Ashley C Banyard, Ian H Brown, Alexander M P Byrne, Nancy Beerens, Yuan Liang, Rene Heutink, Frank Harders, Joe James, Scott M Reid, Rowena D E Hansen, Nicola S Lewis, Charlotte Hjulsager, Lars E Larsen, Siamak Zohari, Kristofer Anderson, Caroline Bröjer, Alexander Nagy, Vladimir Savič, Steven van Borm, Mieke Steensels, Francois-Xavie Published in: mBio, Issue 13/4, 2022, ISSN 2161-2129 Publisher: American Society for Microbiology DOI: 10.1128/mbio.00609-22 One Day in Denmark: Nationwide point-prevalence survey of human bacterial isolates and comparison of classical and whole-genome sequence-based species identification methods Author(s): Ana Rita Rebelo,Tobias Ibfelt, Valeria Bortolaia, Pimlapas Leekitcharoenphon, Dennis Schrøder Hansen, Hans Linde Nielsen, Svend Ellermann-Eriksen, Michael Kemp, Bent Løwe Røder, Niels Frimodt-Møller, Turid Snekloth Søndergaard, John Eugenio Coia, Claus Østergaard, Michael Pedersen, Henrik Westh and Frank Møller Aarestrup Published in: PLOS ONE, 2022, ISSN 1932-6203 Publisher: Public Library of Science DOI: 10.1371/journal.pone.0261999 HAVoC, a bioinformatic pipeline for reference-based consensus assembly and lineage assignment for SARS-CoV-2 sequences Author(s): Phuoc Thien Truong Nguyen, Ilya Plyusnin, Tarja Sironen, Olli Vapalahti, Ravi Kant, Teemu Smura Published in: BMC Bioinformatics, Issue 22/1, 2021, ISSN 1471-2105 Publisher: BioMed Central DOI: 10.1186/s12859-021-04294-2 SARS-CoV-2 Infection and Disease Modelling Using Stem Cell Technology and Organoids Author(s): Marta Trevisan, Silvia Riccetti, Alessandro Sinigaglia, Luisa Barzon Published in: International Journal of Molecular Sciences, Issue 22/5, 2021, Page(s) 2356, ISSN 1422-0067 Publisher: Multidisciplinary Digital Publishing Institute (MDPI) DOI: 10.3390/ijms22052356 Hypopharyngeal Ulcers in COVID-19: Histopathological and Virological Analyses – A Case Report Author(s): Andrea Porzionato, Elena Stocco1, Aron Emmi, Martina Contran, Veronica Macchi, Silvia Riccetti, Alessandro Sinigaglia, Luisa Barzon and Raffaele De Caro Published in: Frontiers in Immunology, Issue 12, 2021, ISSN 1664-3224 Publisher: Frontiers Media SA DOI: 10.3389/fimmu.2021.676828 Sindbis virus neutralising antibodies detected in Swedish horses Author(s): Agnes Björnström, Anne-Lie Blomström, Manish Chandra Singh, Jenny C Hesson Published in: One Health, Issue 12, 2021, ISSN 2352-7714 Publisher: Elsevier BV DOI: 10.1016/j.onehlt.2021.100242 An advanced sequence clustering and designation workflow reveals the enzootic maintenance of a dominant West Nile virus subclade in Germany Author(s): Pauline Dianne Santos, Anne Günther, Markus Keller, Timo Homeier-Bachmann, Martin H. Groschup, Martin Beer, Dirk Höper and Ute Ziegler Published in: BioRxiv, 2022, ISSN 2692-8205 Publisher: Cold Spring Harbor Laboratory Press DOI: 10.1101/2022.10.05.509209 Monitoring SARS-CoV-2 Circulation and Diversity through Community Wastewater Sequencing, the Netherlands and Belgium Author(s): Ray Izquierdo-Lara, Goffe Elsinga, Leo Heijnen, Bas B. Oude Munnink, Claudia M.E. Schapendonk, David Nieuwenhuijse, Matthijs Kon, Lu Lu, Frank M. Aarestrup, Samantha Lycett, Gertjan Medema, Marion P.G. Koopmans, Miranda de Graaf Published in: Emerging Infectious Diseases, Issue 27/5, 2021, Page(s) 1405-1415, ISSN 1080-6040 Publisher: US National Center for Infectious Diseases DOI: 10.3201/eid2705.204410 Prevalence, Infectious Characteristics and Genetic Diversity of Staphylococcus aureus and Methicillin-Resistant Staphylococcus aureus (MRSA) in Two Raw-Meat Processing Establishments in Northern Greece Author(s): Dimitrios Komodromos, Charalampos Kotzamanidis, Virginia Giantzi, Styliani Pappa, Anna Papa, Antonios Zdragas, Apostolos Angelidis, Daniel Sergelidis Published in: Pathogens, Issue 11/11, 2022, ISSN 2076-0817 Publisher: Multidisciplinary Digital Publishing Institute (MDPI) DOI: 10.3390/pathogens11111370 Integrating Global Citizen Science Platforms to Enable Next-Generation Surveillance of Invasive and Vector Mosquitoes Author(s): Ryan M. Carney, Connor Mapes, Russanne D. Low, Alex Long, Anne Bowser, David Durieux, Karlene Rivera, Berj Dekramanjian, Frederic Bartumeus, Daniel Guerrero, Carrie E. Seltzer, Farhat Azam, Sriram Chellappan and John R. B. Palmer Published in: Insects, Issue 13/8, 2022, ISSN 2075-4450 Publisher: Multidisciplinary Digital Publishing Institute (MDPI) DOI: 10.3390/insects13080675 Normalisation of SARS-CoV-2 concentrations in wastewater: The use of flow, electrical conductivity and crAssphage Author(s): Jeroen Langeveld, Remy Schilperoort, Leo Heijnen, Goffe Elsinga, Claudia E.M. Schapendonk, Ewout Fanoy, Evelien I.T. de Schepper, Marion P.G. Koopmans, Miranda de Graaf and Gertjan Medema Published in: Science of the Total Environment, Issue 865, 2022, ISSN 0048-9697 Publisher: Elsevier BV DOI: 10.1016/j.scitotenv.2022.161196 Timeliness of online COVID-19 reports from official sources Author(s): Laura Espinosa, Olesia Altunina, and Marcel Salathé Published in: Frontiers in Public Health, Issue 10, 2023, ISSN 2296-2565 Publisher: Future Biologics DOI: 10.3389/fpubh.2022.1027812 Social Media Use, Self-Efficacy, Perceived Threat, and Preventive Behavior in Times of COVID-19: Results of a Cross-Sectional Study in Pakistan Author(s): Qaisar Khalid Mahmood, Sara Rizvi Jafree, Sahifa Mukhtar and Florian Fischer Published in: Frontiers in Pschology, Issue 12, 2021, ISSN 1664-1078 Publisher: Frontiers Research Foundation DOI: 10.3389/fpsyg.2021.562042 Kinetics of Neutralizing Antibodies of COVID-19 Patients Tested Using Clinical D614G, B.1.1.7, and B 1.351 Isolates in Microneutralization Assays Author(s): Jenni Virtanen, Ruut Uusitalo, Essi M. Korhonen, Kirsi Aaltonen, Teemu Smura, Suvi Kuivanen, Sari H. Pakkanen, Sointu Mero, Anu Patjas, Marianna Riekkinen, Anu Kantele, Visa Nurmi, Klaus Hedman, Jussi Hepojoki,Tarja Sironen, Eili Huhtamo and Olli Vapalahti Published in: Viruses, Issue 13/6, 2021, ISSN 1999-4915 Publisher: Multidisciplinary Digital Publishing Institute (MDPI) DOI: 10.3390/v13060996 ClusTRace, a bioinformatic pipeline for analyzing clusters in virus phylogenies Author(s): Ilya Plyusnin1, Phuoc Thien Truong Nguyen, Tarja Sironen, Olli Vapalahti, Teemu Smura and Ravi Kant Published in: BMC Bioinformatics, Issue 23/196, 2022, ISSN 1471-2105 Publisher: BioMed Central DOI: 10.1186/s12859-022-04709-8 Nanobody engineering for SARS-CoV-2 neutralization and detection Author(s): Liina Hannula, Suvi Kuivanen, Jonathan Lasham, Ravi Kant, Lauri Kareinen, Mariia Bogacheva, Tomas Strandin, Tarja Sironen, Vivek Sharma, Petri Saviranta, Anja Kipar, Olli Vapalahti, Juha T. Huiskonen, Ilona Rissanen Published in: BioRxiv, 2022, ISSN 2692-8205 Publisher: Cold Spring Harbor Laboratory Press DOI: 10.1101/2022.09.14.507920 Experimental Infection and Genetic Characterization of Two Different Capripox Virus Isolates in Small Ruminants Author(s): Janika Wolff, Jacqueline King, Tom Moritz, Anne Pohlmann, Donata Hoffmann, Martin Beer, Bernd Hoffmann Published in: Viruses, Issue 12/10, 2020, Page(s) 1098, ISSN 1999-4915 Publisher: Multidisciplinary Digital Publishing Institute (MDPI) DOI: 10.3390/v12101098 Experimental SARS-CoV-2 Infection of Bank Voles Author(s): Lorenz Ulrich, Anna Michelitsch, Nico Halwe, Kerstin Wernike, Donata Hoffmann, Martin Beer Published in: Emerging Infectious Diseases, Issue 27/4, 2021, Page(s) 1193-1195, ISSN 1080-6040 Publisher: US National Center for Infectious Diseases DOI: 10.3201/eid2704.204945 Phylogenetic Investigation of Norovirus Transmission between Humans and Animals Author(s): Nele Villabruna, Ray W. Izquierdo Lara, Judit Szarvas, Marion P. G. Koopmans, Miranda de Graaf Published in: Viruses, Issue 12/11, 2020, Page(s) 1287, ISSN 1999-4915 Publisher: Multidisciplinary Digital Publishing Institute (MDPI) DOI: 10.3390/v12111287 COVID-19 in health-care workers in three hospitals in the south of the Netherlands: a cross-sectional study Author(s): Reina S Sikkema, Suzan D Pas, David F Nieuwenhuijse, Áine O'Toole, Jaco Verweij, Anne van der Linden, Irina Chestakova, Claudia Schapendonk, Mark Pronk, Pascal Lexmond, Theo Bestebroer, Ronald J Overmars, Stefan van Nieuwkoop, Wouter van den Bijllaardt, Robbert G Bentvelsen, Miranda M L van Rijen, Anton G M Buiting, Anne J G van Oudheusden, Bram M Diederen, Anneke M C Bergmans, Annemiek van der E Published in: The Lancet Infectious Diseases, Issue 20/11, 2020, Page(s) 1273-1280, ISSN 1473-3099 Publisher: The Lancet Publishing Group DOI: 10.1016/s1473-3099(20)30527-2 Diagnostic Potential of a Luminex-Based Coronavirus Disease 2019 Suspension Immunoassay (COVID-19 SIA) for the Detection of Antibodies against SARS-CoV-2 Author(s): Tove Hoffman, Linda Kolstad, Johanna F. Lindahl, Bo Albinsson, Anders Bergqvist, Bengt Rönnberg and Åke Lundkvist Published in: Viruses, Issue 13/993, 2021, ISSN 1999-4915 Publisher: Multidisciplinary Digital Publishing Institute (MDPI) DOI: 10.3390/v13060993 The genetics of highly pathogenic avian influenza viruses of subtype H5 in Germany, 2006–2020 Author(s): Jacqueline King, Timm Harder, Franz J. Conraths, Martin Beer, Anne Pohlmann Published in: Transboundary and Emerging Diseases, Issue 68/3, 2021, Page(s) 1136-1150, ISSN 1865-1674 Publisher: Blackwell-Wiss.-Verl DOI: 10.1111/tbed.13843 Human Virus Genomes Are Enriched in Conserved Adenine/Thymine/Uracil Multiple Tracts That Pause Polymerase Progression Author(s): Emanuela Ruggiero, Enrico Lavezzo, Marco Grazioli, Irene Zanin, Maja Marušič, Janez Plavec, Sara N. Richter and Stefano Toppo Published in: Frontiers in Microbiology, Issue 13, 2022, ISSN 1664-302X Publisher: Frontiers Media DOI: 10.3389/fmicb.2022.915069 Human West Nile Virus Lineage 2 Infection: Epidemiological, Clinical, and Virological Findings Author(s): Monia Pacenti, Alessandro Sinigaglia, Elisa Franchin, Silvana Pagni, Enrico Lavezzo, Fabrizio Montarsi, Gioia Capelli, Luisa Barzon Published in: Viruses, Issue 12/4, 2020, Page(s) 458, ISSN 1999-4915 Publisher: Multidisciplinary Digital Publishing Institute (MDPI) DOI: 10.3390/v12040458 Suppression of a SARS-CoV-2 outbreak in the Italian municipality of Vo’ Author(s): Enrico Lavezzo, Elisa Franchin, Constanze Ciavarella, Gina Cuomo-Dannenburg, Luisa Barzon, Claudia Del Vecchio, Lucia Rossi, Riccardo Manganelli, Arianna Loregian, Nicolò Navarin, Davide Abate, Manuela Sciro, Stefano Merigliano, Ettore De Canale, Maria Cristina Vanuzzo, Valeria Besutti, Francesca Saluzzo, Francesco Onelia, Monia Pacenti, Saverio G. Parisi, Giovanni Carretta, Daniele Donato, Lucia Published in: Nature, Issue 584/7821, 2020, Page(s) 425-429, ISSN 0028-0836 Publisher: Nature Publishing Group DOI: 10.1038/s41586-020-2488-1 Filling the gaps in the global prevalence map of clinical antimicrobial resistance Author(s): Rik Oldenkamp, Constance Schultsz, Emiliano Mancini, Antonio Cappuccio Published in: Proceedings of the National Academy of Sciences, Issue 118/1, 2020, Page(s) e2013515118, ISSN 0027-8424 Publisher: National Academy of Sciences DOI: 10.1073/pnas.2013515118 Next-generation diagnostics: virus capture facilitates a sensitive viral diagnosis for epizootic and zoonotic pathogens including SARS-CoV-2 Author(s): Claudia Wylezich, Sten Calvelage, Kore Schlottau, Ute Ziegler, Anne Pohlmann, Dirk Höper, Martin Beer Published in: Microbiome, Issue 9/1, 2021, ISSN 2049-2618 Publisher: BMC DOI: 10.1186/s40168-020-00973-z Targeting the NS2B-NS3 protease of tick-borne encephalitis virus withpan-flaviviral protease inhibitors Author(s): Dario Akaberi, Amanda Båhlström, Praveen K. Chinthakindi, Tomas Nyman, Anja Sandström, Josef D. Järhult, Navaneethan Palanisamy, Åke Lundkvist and Johan Lennerstrand Published in: Antiviral Research, Issue 190, 2021, ISSN 0166-3542 Publisher: Elsevier BV DOI: 10.1016/j.antiviral.2021.105074 SARS-CoV-2 spike D614G change enhances replication and transmission Author(s): Bin Zhou, Tran Thi Nhu Thao, Donata Hoffmann, Adriano Taddeo, Nadine Ebert, Fabien Labroussaa, Anne Pohlmann, Jacqueline King, Silvio Steiner, Jenna N. Kelly, Jasmine Portmann, Nico Joel Halwe, Lorenz Ulrich, Bettina Salome Trüeb, Xiaoyu Fan, Bernd Hoffmann, Li Wang, Lisa Thomann, Xudong Lin, Hanspeter Stalder, Berta Pozzi, Simone de Brot, Nannan Jiang, Dan Cui, Jaber Hossain, Malania M. Wilson, Published in: Nature, Issue 592/7852, 2021, Page(s) 122-127, ISSN 0028-0836 Publisher: Nature Publishing Group DOI: 10.1038/s41586-021-03361-1 Co‐infections: Simultaneous detections of West Nile virus and Usutu virus in birds from Germany Author(s): Pauline Dianne Santos, Friederike Michel, Claudia Wylezich, Dirk Höper, Markus Keller, Cora M. Holicki, Claudia A. Szentiks, Martin Eiden, Aemero Muluneh, Antonie Neubauer‐Juric, Sabine Thalheim, Anja Globig, Martin Beer, Martin H. Groschup, Ute Ziegler Published in: Transboundary and Emerging Diseases, 2021, ISSN 1865-1674 Publisher: Blackwell-Wiss.-Verl DOI: 10.1111/tbed.14050 Neutralising reactivity against SARS-CoV-2 Delta and Omicron variants by vaccination and infection history Author(s): Enrico Lavezzo, Monia Pacenti, Laura Manuto, Caterina Boldrin, Margherita Cattai, Marco Grazioli, Federico Bianca, Margherita Sartori, Federico Caldart, Gioele Castelli, Michele Nicoletti, Eleonora Nieddu, Elisa Salvadoretti, Beatrice Labella, Ludovico Fava, Maria Cristina Vanuzzo, Vittoria Lisi, Maria Antonello, Carmela Ileana Grimaldi, Chiara Zulian, Claudia Del Vecchio, Mario Plebani, Andrea Pa Published in: Genome Medicine, Issue 14/61, 2022, ISSN 1756-994X Publisher: BioMed Central DOI: 10.1186/s13073-022-01066-2 Highly pathogenic avian influenza virus incursions of subtype H5N8, H5N5, H5N1, H5N4, and H5N3 in Germany during 2020-21 Author(s): Jacqueline King, Timm Harder, Anja Globig, Lina Stacker, Anne Günther, Christian Grund, Martin Beer, Anne Pohlmann Published in: Virus Evolution, Issue 8/1, 2022, ISSN 2057-1577 Publisher: Oxford University Press DOI: 10.1093/ve/veac035 The next phase of SARS-CoV-2 surveillance: real-time molecular epidemiology Author(s): Bas B Oude Munnink, Nathalie Worp, David F Nieuwenhuijse, Reina S Sikkema, Bart Haagmans, Ron A M Fouchier, Marion Koopmans Published in: Nature Medicine, Issue 27/9, 2021, ISSN 1078-8956 Publisher: Nature Publishing Group DOI: 10.1038/s41591-021-01472-w Deep learning identification for citizen science surveillance of tiger mosquitoes Author(s): Balint Armin Pataki, Joan Garriga, Roger Eritja, John R. B. Palmer, Frederic Bartumeus, Istvan Csabai Published in: Scientific Reports, Issue 11/1, 2021, ISSN 2045-2322 Publisher: Nature Publishing Group DOI: 10.1038/s41598-021-83657-4 West Nile fever upsurge in a Greek regional unit, 2020 Author(s): Anna Papa, Katerina Tsioka, Sandra Gewehr, Stella Kalaitzopouou, Danai Pervanidou, Anna Vakali, Chrysovalantou Kefaloudi, Styliani Pappa, Xanthoula Louka, Spiros Mourelatos Published in: Acta Tropica, Issue 221, 2021, Page(s) 106010, ISSN 0001-706X Publisher: Elsevier BV DOI: 10.1016/j.actatropica.2021.106010 Transatlantic spread of highly pathogenic avian influenza H5N1 by wild birds from Europe to North America in 2021 Author(s): V. Caliendo; N. S. Lewis; A. Pohlmann; S.R. Baillie; A.C. Banyard; M. Beer; I.H. Brown; R.A.M. Fouchier; R.D.E. Hansen; T.K. Lameris; A.S. Lang; S. Laurendeau; O. Lung; G. Robertson; H. van der Jeugd; T.N. Alkie; K. Thorup; M.L. van Toor; J. Waldenström; C. Yason; T. Kuiken; Y. Berhane Published in: Scientific Reports, Issue 45, 2022, ISSN 2045-2322 Publisher: Nature Publishing Group DOI: 10.1101/2022.01.13.476155 A 10-Minute “Mix and Read” Antibody Assay for SARS-CoV-2 Author(s): Juuso Rusanen, Lauri Kareinen, Lev Levanov, Sointu Mero, Sari H. Pakkanen, Anu Kantele, Fatima Amanat, Florian Krammer, Klaus Hedman, Olli Vapalahti and Jussi Hepojoki Published in: Viruses, Issue 13/2, 2021, ISSN 1999-4915 Publisher: Multidisciplinary Digital Publishing Institute (MDPI) DOI: 10.3390/v13020143 Introduction and Rapid Spread of SARS-CoV-2 Omicron Variant and Dynamics of BA.1 and BA.1.1 Sublineages, Finland, December 2021 Author(s): Hanna Vauhkonen, Phuoc Truong Nguyen, Ravi Kant, Ilja Plyusnin, Mert Erdin, Satu Kurkela, Hanna Liimatainen, Niina Ikonen, Soile Blomqvist, Kirsi Liitsola, Erika Lindh, Otto Helve, Hanna Jarva, Raisa Loginov, Aino Palva, Tiina Hannunen, Sari Hannula, Mikko Parry, Paula Kauppi, Antti Vaheri, Tarja Sironen, Maija Lappalainen, Carita Savolainen-Kopra, Teemu Smura, Olli Vapalahti Published in: Emerging Infectious Diseases, Issue 28/6, 2022, ISSN 1080-6040 Publisher: US National Center for Infectious Diseases DOI: 10.3201/eid2806.220515 Common Laboratory Mice Are Susceptible to Infection with the SARS-CoV-2 Beta Variant Author(s): Ravi Kant, Lauri Kareinen, Teemu Smura, Tobias L. Freitag, Sawan Kumar Jha, Kari Alitalo, Seppo Meri, Tarja Sironen, Kalle Saksela, Tomas Strandin, Anja Kipar and Olli Vapalahti Published in: Viruses, Issue 13/11, 2021, ISSN 1999-4915 Publisher: Multidisciplinary Digital Publishing Institute (MDPI) DOI: 10.3390/v13112263 Evaluation of Production Lots of a Rapid Point-of-Care Lateral Flow Serological Test Intended for Identification of IgM and IgG against the N-Terminal Part of the Spike Protein (S1) of SARS-CoV-2 Author(s): Tove Hoffman, Linda Kolstad, Bengt Rönnberg and Åke Lundkvist Published in: Viruses, Issue 13/6, 2021, ISSN 1999-4915 Publisher: Multidisciplinary Digital Publishing Institute (MDPI) DOI: 10.3390/v13061043 Rapid SARS-CoV-2 whole-genome sequencing and analysis for informed public health decision-making in the Netherlands Author(s): Bas B. Oude Munnink, David F. Nieuwenhuijse, Mart Stein, Áine O’Toole, Manon Haverkate, Madelief Mollers, Sandra K. Kamga, Claudia Schapendonk, Mark Pronk, Pascal Lexmond, Anne van der Linden, Theo Bestebroer, Irina Chestakova, Ronald J. Overmars, Stefan van Nieuwkoop, Richard Molenkamp, Annemiek A. van der Eijk, Corine GeurtsvanKessel, Harry Vennema, Adam Meijer, Andrew Rambaut, Jaap van Disse Published in: Nature Medicine, Issue 26/9, 2020, Page(s) 1405-1410, ISSN 1078-8956 Publisher: Nature Publishing Group DOI: 10.1038/s41591-020-0997-y Temporal Dynamics of Influenza A(H5N1) Subtype before and after the Emergence of H5N8. Author(s): Amer F, Li R, Rabie N, El-Husseiny MH, Yehia N, Hagag NM, Samy M, Selim A, Hassan MK, Hassan WMM, Arafa AS, Lundkvist Å, Shahein MA, Naguib MM. Published in: Viruses, Issue 13/8, 2021, ISSN 1999-4915 Publisher: Multidisciplinary Digital Publishing Institute (MDPI) DOI: 10.3390/v13081565 Multi‐species ELISA for the detection of antibodies against SARS‐CoV‐2 in animals Author(s): Kerstin Wernike, Andrea Aebischer, Anna Michelitsch, Donata Hoffmann, Conrad Freuling, Anne Balkema‐Buschmann, Annika Graaf, Thomas Müller, Nikolaus Osterrieder, Melanie Rissmann, Dennis Rubbenstroth, Jacob Schön, Claudia Schulz, Jakob Trimpert, Lorenz Ulrich, Asisa Volz, Thomas Mettenleiter, Martin Beer Published in: Transboundary and Emerging Diseases, Issue 68/4, 2021, Page(s) 1779-1785, ISSN 1865-1674 Publisher: Blackwell-Wiss.-Verl DOI: 10.1111/tbed.13926 Genetic data in the fight against pandemics Author(s): Ágnes Becsei, Orsolya Anna Pipek, Péter Pollner, István Csabai Published in: AK Journals, Issue 2/1, 2021, Page(s) 12-16, ISSN 2732-2688 Publisher: Scientia et Securitas DOI: 10.1556/112.2021.00006 One Day in Denmark: Comparison of Phenotypic and Genotypic Antimicrobial Susceptibility Testing in Bacterial Isolates From Clinical Settings Author(s): Ana Rita Rebelo, Valeria Bortolaia, Pimlapas Leekitcharoenphon, Dennis Schrøder Hansen, Hans Linde Nielsen, Svend Ellermann-Eriksen, Michael Kemp, Bent Løwe Røder, Niels Frimodt-Møller, Turid Snekloth Søndergaard, John Eugenio Coia, Claus Østergaard, Henrik Westh and Frank M. Aarestrup Published in: Frontiers in Microbiology, Issue 13, 2022, ISSN 1664-302X Publisher: Frontiers Media DOI: 10.3389/fmicb.2022.804627 CRHP Finder, a webtool for the detection of clarithromycin resistance in Helicobacter pylori from whole‐genome sequencing data Author(s): Melodi Yusibova, Henrik Hasman, Philip Thomas Lanken Conradsen Clausen, Frank Imkamp, Karoline Wagner, Leif Percival Andersen Published in: Helicobacter, Issue 25/6, 2020, ISSN 1083-4389 Publisher: Blackwell Publishing Inc. DOI: 10.1111/hel.12752 Clusters of science and health related Twitter users become more isolated during the COVID-19 pandemic Author(s): Francesco Durazzi, Martin Müller, Marcel Salathé & Daniel Remondini Published in: Scientific Reports volume, Issue 11/19655, 2021, ISSN 2045-2322 Publisher: Nature Publishing Group DOI: 10.1038/s41598-021-99301-0 Wolbachia prevalence in the vector species Culex pipiens and Culex torrentium in a Sindbis virus-endemic region of Sweden Author(s): Alexander Bergman; Jenny C. Hesson Published in: Parasites & Vectors, 2021, ISSN 1756-3305 Publisher: BioMed Central DOI: 10.1186/s13071-021-04937-6 Sindbis Virus Infection in Non-Blood-Fed Hibernating Culex pipiens Mosquitoes in Sweden Author(s): Alexander Bergman, Emma Dahl, Åke Lundkvist and Jenny C. 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Chandler; Nisreen M.A. Okba; Bart L. Haagmans; Thomas Langerak; Henrik Endeman; Johannes P. C. van den Akker; Diederik Gommers; Eric C. M. van Gorp; Corine H. GeurtsvanKessel; Rory D. de Vries; Ron A. M. Fouchier; Barry Rockx; Marion Koopmans; Gijsbert P. van Nierop Published in: Journal of Clinical Investigation, Issue 51, 2021, ISSN 1558-8238 Publisher: American Society for Clinical Investigation DOI: 10.1172/jci150613 Antigenic cartography of SARS-CoV-2 reveals that Omicron BA.1 and BA.2 are antigenically distinct. Author(s): Mykytyn, Anna Z; Rissmann, Melanie; Kok, Adinda; Rosu, Miruna E; Schipper, Debby; Breugem, Tim I; van den Doel, Petra B; Chandler, Felicity; Bestebroer, Theo; de Wit, Maurice; van Royen, Martin E; Molenkamp, Richard; Oude Munnink, Bas B; de Vries, Rory D; GeurtsvanKessel, Corine; Smith, Derek J; Koopmans, Marion P G; Rockx, Barry; Lamers, Mart M; Fouchier, Ron A M; Haagmans, Bart L. Published in: Science Immunology, Issue 7/75, 2022, ISSN 2470-9468 Publisher: AAAS DOI: 10.1126/sciimmunol.abq4450 Longitudinal analysis of T cell receptor repertoires reveals shared patterns of antigen-specific response to SARS-CoV-2 infection Author(s): Rachel M Gittelman, Enrico Lavezzo, Thomas M Snyder, H Jabran Zahid, Cara L Carty, Rebecca Elyanow, Sudeb Dalai, Ilan Kirsch, Lance Baldo, Laura Manuto, Elisa Franchin, Claudia Del Vecchio, Monia Pacenti, Caterina Boldrin, Margherita Cattai, Francesca Saluzzo, Andrea Padoan, Mario Plebani, Fabio Simeoni, Jessica Bordini, Nicola I Lorè, Dejan Lazarević, Daniela M Cirillo, Paolo Ghia, Stefano Topp Published in: JCI Insight, 2022, ISSN 2077-0383 Publisher: Multidisciplinary Digital Publishing Institute (MDPI) DOI: 10.1172/jci.insight.151849 Evaluation of the use of alternative sample types for mosquito-borne flavivirus surveillance: Using Usutu virus as a model Author(s): Nnomzie C. Atama, Irina V. Chestakova, Erwin de Bruin, Tijs J. van den Berg, Emmanuelle Munger, Chantal Reusken, Bas B. Oude Munnink, Henk van der Jeugd, Judith M.A. van den Brand, Marion P.G. Koopmans and Reina S. Sikkema Published in: One Health, Issue 15, 2022, ISSN 2352-7714 Publisher: Elsevier DOI: 10.1016/j.onehlt.2022.100456 MINTyper: an outbreak-detection method for accurate and rapid SNP typing of clonal clusters with noisy long reads Author(s): Malte B Hallgren, Søren Overballe-Petersen, Ole Lund, Henrik Hasman, Philip T L C Clausen Published in: Biology Methods and Protocols, Issue 6/1, 2021, ISSN 2396-8923 Publisher: Oxford Academic DOI: 10.1093/biomethods/bpab008 Experimental Infection of Mink with SARS-COV-2 Omicron Variant and Subsequent Clinical Disease Author(s): Jenni Virtanen, Kirsi Aaltonen, Kristel Kegler, Vinaya Venkat, Thanakorn Niamsap, Lauri Kareinen, Rasmus Malmgren, Olga Kivelä, Nina Atanasova, Pamela Österlund, Teemu Smura, Antti Sukura, Tomas Strandin, Lara Dutra, Olli Vapalahti, Heli Nordgren, Ravi Kant and Tarja Sironen Published in: Emerging Infectious Diseases, Issue 28/6, 2022, ISSN 1080-6040 Publisher: US National Center for Infectious Diseases DOI: 10.3201/eid2806.220328 Intranasal inhibitor broadly blocks SARS-CoV-2 including recent highly immunoevasive Omicron subvariants Author(s): Anna R. Mäkelä, Hasan Uğurlu, Liina Hannula, Ravi Kant, Petja Salminen, Riku Fagerlund, Sanna Mäki, Anu Haveri, Tomas Strandin, Lauri Kareinen, Jussi Hepojoki, Suvi Kuivanen, Lev Levanov, Arja Pasternack, Rauno A. Naves, Olli Ritvos, Pamela Österlund, Tarja Sironen, Olli Vapalahti, Anja Kipar, Juha T. Huiskonen, Ilona Rissanen and Kalle Saksela Published in: BioRxiv, 2022, ISSN 2692-8205 Publisher: Cold Spring Harbor Laboratory Press DOI: 10.1101/2021.12.28.474326 Iceland as Stepping Stone for Spread of Highly Pathogenic Avian Influenza Virus between Europe and North America Author(s): Anne Günther, Oliver Krone, Vilhjalmur Svansson, Anne Pohlmann, Jacqueline King, Gunnar Thor Hallgrimsson, Kristinn Haukur Skarphéðinsson, Heiða Sigurðardóttir, Stefán Ragnar Jónsson, Martin Beer, Brigitte Brugger, Timm Harder Published in: Emerging Infectious Diseases, Issue 28/12, 2022, ISSN 1080-6040 Publisher: US National Center for Infectious Diseases DOI: 10.3201/eid2812.221086 West Nile Virus spread in Europe - phylogeographic pattern analysis and key drivers Author(s): Lu Lu, Feifei Zhang, Bas B. Oude Munnink, Emmanuelle Munger, Reina S. Sikkema, Styliani Pappa, Katerina Tsioka, Alessandro Sinigaglia, Emanuela Dal Molin, Barbara B. Shih, Anne Günther, Anne Pohlmann, Martin Beer, Rachel A. 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Aarestrup, Luisa Barzon, Anna Papa and Samantha Lycett Published in: BioRxiv, 2022, ISSN 2692-8205 Publisher: Cold Spring Harbor Laboratory Press DOI: 10.1101/2022.11.10.515886 SARS-CoV-2 Neutralizing Human Antibodies Protect Against Lower Respiratory Tract Disease in a Hamster Model Author(s): Bart L Haagmans, Danny Noack, Nisreen M A Okba, Wentao Li, Chunyan Wang, Theo Bestebroer, Rory de Vries, Sander Herfst, Dennis de Meulder, Elwin Verveer, Peter van Run, Mart M Lamers, Bart Rijnders, Casper Rokx, Frank van Kuppeveld, Frank Grosveld, Dubravka Drabek, Corine Geurts van Kessel, Marion Koopmans, Berend Jan Bosch, Thijs Kuiken, Barry Rockx Published in: The Journal of Infectious Diseases, Issue 223/12, 2021, Page(s) 2020-2028, ISSN 0022-1899 Publisher: University of Chicago Press DOI: 10.1093/infdis/jiab289 Spa diversity and genetic characterization of t127 methicillin-resistant Staphylococcus aureus in a tertiary Greek hospital Author(s): Katerina Tsergouli, Theodoros Karampatakis, Konstantina Kontopoulou, Styliani Pappa, Parthena Kampouridou, Georgia Kallasidou, Katerina Tsioka, Sophia Zotou, Εleftheria-Eugenia Farmaki, Charalampos Kotzamanidis and Anna Papa Published in: Acta Microbiologica et immunologica Hungarica, Issue 69/3, 2022, ISSN 1217-8950 Publisher: Akademiai Kiado DOI: 10.1556/030.2022.01825 Risks of SARS-CoV-2 transmission between free-ranging animals and captive mink in the Netherlands Author(s): Reina S. Sikkema, Lineke Begeman, René Janssen, Wendy J. Wolters, Corine Geurtsvankessel, Erwin de Bruin, Renate W. Hakze-van der Honing, Phaedra Eblé, Wim H.M. van der Poel, Judith M.A. van den Brand, Roy Slaterus, Maurice La Haye, Marion P.G. Koopmans, Francisca Velkers and Thijs Kuiken Published in: Transboundary and Emerging Diseases, 2022, ISSN 1865-1674 Publisher: Blackwell-Wiss.-Verl DOI: 10.1111/tbed.14686 Rapid spread of a new West Nile virus lineage 1 associated with increased risk of neuroinvasive disease during a large outbreak in northern Italy, 2022: One Health analysis. Author(s): Barzon L, Pacenti M, Montarsi F, Fornasiero D, Gobbo F, Quaranta E, Monne I, Fusaro A, Volpe A, Sinigaglia A, Riccetti S, Molin ED, Satto S, Lisi V, Gobbi F, Galante S, Feltrin G, Valeriano V, Favero L, Russo F, Mazzucato M, Bortolami A, Mulatti P, Terregino C, Capelli G. Published in: Journal of Travel Medicine, 2022, ISSN 1195-1982 Publisher: B.C. Decker Inc. DOI: 10.1093/jtm/taac125 Searching for OpenAIRE data... There was an error trying to search data from OpenAIRE No results available
