Versatile Emerging infectious disease Observatory

Publications

SARS-CoV-2 and Type 1 Diabetes in Finnish Children

Auteurs: Knip M, Parviainen A, Turtinen M, But A, Härkönen T, Hepojoki J, Sironen T, Iheozor-Ejiofor R, Uğurlu H, Saksela K, Lempainen J, Ilonen J, Vapalahti O, Register FPD
Publié dans: Social Science Research Network, 2022, ISSN 1556-5068
Éditeur: Elsevier
DOI: 10.2139/ssrn.4237744

SARS-CoV-2 infections among healthcare workers at Helsinki University Hospital, Finland, spring 2020: Serosurvey, symptoms and risk factors

Auteurs: Anu Kantele, Tinja Lääveri, Lauri Kareinen, Sari H. Pakkanen, Karin Blomgren, Sointu Mero, Anu Patjas, Jenni Virtanen, Ruut Uusitalo, Maija Lappalainen, Asko Järvinen, Satu Kurkela, Anne J. Jääskeläinen, Olli Vapalahti, Tarja Sironen
Publié dans: Travel Medicine and Infectious Disease, Numéro 39, 2021, ISSN 1477-8939
Éditeur: Elsevier BV
DOI: 10.1016/j.tmaid.2020.101949

Canine Saliva as a Possible Source of Antimicrobial Resistance Genes

Auteurs: Adrienn Gréta Tóth, Imre Tóth, Bernadett Rózsa, Attila Dubecz, Árpád V. Patai, Tibor Németh, Selçuk Kaplan, Eszter Gabriella Kovács, László Makrai, Norbert Solymosi
Publié dans: Antibiotics, Numéro 11/11, 2022, ISSN 2078-2489
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/antibiotics11111490

Impact of antigenic evolution and original antigenic sin on SARS-CoV-2 immunity

Auteurs: Muriel Aguilar-Bretones, Ron Am Fouchier, Marion Pg Koopmans, Gijsbert P van Nierop
Publié dans: The Journal of Clinical Investigation, Numéro 133/1, 2023, ISSN 0021-9738
Éditeur: American Society for Clinical Investigation
DOI: 10.1172/jci162192

Rise and fall of SARS-CoV-2 variants in Rotterdam: Comparison of wastewater and clinical surveillance

Auteurs: Ray W Izquierdo-Lara, Leo Heijnen, Bas B Oude Munnink, Claudia M E Schapendonk, Goffe Elsinga, Jeroen Langeveld, Johan Post, Divyae K Prasad, Christian Carrizosa, Frederic Been, Janko van Beek, Remy Schilperoort, Rianne Vriend, Ewout Fanoy, Evelien I T de Schepper, Reina S Sikkema, Richard Molenkamp, Frank M Aarestrup, Gertjan Medema, Marion P G Koopmans and Miranda de Graaf
Publié dans: Science of the Total Environment, Numéro 873, 2023, ISSN 0048-9697
Éditeur: Elsevier BV
DOI: 10.1016/j.scitotenv.2023.162209

Case Report: The Carotid Body in COVID-19: Histopathological and Virological Analyses of an Autopsy Case Series

Auteurs: Andrea Porzionato, Aron Emmi, Martina Contran, Elena Stocco, Silvia Riccetti, Alessandro Sinigaglia, Veronica Macchi, Luisa Barzon and Raffaele De Caro
Publié dans: Frontiers in Immunology, Numéro 12, 2021, ISSN 1664-3224
Éditeur: Frontiers Media SA
DOI: 10.3389/fimmu.2021.736529

Has Epizootic Become Enzootic? Evidence for a Fundamental Change in the Infection Dynamics of Highly Pathogenic Avian Influenza in Europe, 2021

Auteurs: Anne Pohlmann, Jacqueline King, Alice Fusaro, Bianca Zecchin, Ashley C Banyard, Ian H Brown, Alexander M P Byrne, Nancy Beerens, Yuan Liang, Rene Heutink, Frank Harders, Joe James, Scott M Reid, Rowena D E Hansen, Nicola S Lewis, Charlotte Hjulsager, Lars E Larsen, Siamak Zohari, Kristofer Anderson, Caroline Bröjer, Alexander Nagy, Vladimir Savič, Steven van Borm, Mieke Steensels, Francois-Xavie
Publié dans: mBio, Numéro 13/4, 2022, ISSN 2161-2129
Éditeur: American Society for Microbiology
DOI: 10.1128/mbio.00609-22

One Day in Denmark: Nationwide point-prevalence survey of human bacterial isolates and comparison of classical and whole-genome sequence-based species identification methods

Auteurs: Ana Rita Rebelo,Tobias Ibfelt, Valeria Bortolaia, Pimlapas Leekitcharoenphon, Dennis Schrøder Hansen, Hans Linde Nielsen, Svend Ellermann-Eriksen, Michael Kemp, Bent Løwe Røder, Niels Frimodt-Møller, Turid Snekloth Søndergaard, John Eugenio Coia, Claus Østergaard, Michael Pedersen, Henrik Westh and Frank Møller Aarestrup
Publié dans: PLOS ONE, 2022, ISSN 1932-6203
Éditeur: Public Library of Science
DOI: 10.1371/journal.pone.0261999

HAVoC, a bioinformatic pipeline for reference-based consensus assembly and lineage assignment for SARS-CoV-2 sequences

Auteurs: Phuoc Thien Truong Nguyen, Ilya Plyusnin, Tarja Sironen, Olli Vapalahti, Ravi Kant, Teemu Smura
Publié dans: BMC Bioinformatics, Numéro 22/1, 2021, ISSN 1471-2105
Éditeur: BioMed Central
DOI: 10.1186/s12859-021-04294-2

SARS-CoV-2 Infection and Disease Modelling Using Stem Cell Technology and Organoids

Auteurs: Marta Trevisan, Silvia Riccetti, Alessandro Sinigaglia, Luisa Barzon
Publié dans: International Journal of Molecular Sciences, Numéro 22/5, 2021, Page(s) 2356, ISSN 1422-0067
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms22052356

Hypopharyngeal Ulcers in COVID-19: Histopathological and Virological Analyses – A Case Report

Auteurs: Andrea Porzionato, Elena Stocco1, Aron Emmi, Martina Contran, Veronica Macchi, Silvia Riccetti, Alessandro Sinigaglia, Luisa Barzon and Raffaele De Caro
Publié dans: Frontiers in Immunology, Numéro 12, 2021, ISSN 1664-3224
Éditeur: Frontiers Media SA
DOI: 10.3389/fimmu.2021.676828

Sindbis virus neutralising antibodies detected in Swedish horses

Auteurs: Agnes Björnström, Anne-Lie Blomström, Manish Chandra Singh, Jenny C Hesson
Publié dans: One Health, Numéro 12, 2021, ISSN 2352-7714
Éditeur: Elsevier BV
DOI: 10.1016/j.onehlt.2021.100242

An advanced sequence clustering and designation workflow reveals the enzootic maintenance of a dominant West Nile virus subclade in Germany

Auteurs: Pauline Dianne Santos, Anne Günther, Markus Keller, Timo Homeier-Bachmann, Martin H. Groschup, Martin Beer, Dirk Höper and Ute Ziegler
Publié dans: BioRxiv, 2022, ISSN 2692-8205
Éditeur: Cold Spring Harbor Laboratory Press
DOI: 10.1101/2022.10.05.509209

Monitoring SARS-CoV-2 Circulation and Diversity through Community Wastewater Sequencing, the Netherlands and Belgium

Auteurs: Ray Izquierdo-Lara, Goffe Elsinga, Leo Heijnen, Bas B. Oude Munnink, Claudia M.E. Schapendonk, David Nieuwenhuijse, Matthijs Kon, Lu Lu, Frank M. Aarestrup, Samantha Lycett, Gertjan Medema, Marion P.G. Koopmans, Miranda de Graaf
Publié dans: Emerging Infectious Diseases, Numéro 27/5, 2021, Page(s) 1405-1415, ISSN 1080-6040
Éditeur: US National Center for Infectious Diseases
DOI: 10.3201/eid2705.204410

Prevalence, Infectious Characteristics and Genetic Diversity of Staphylococcus aureus and Methicillin-Resistant Staphylococcus aureus (MRSA) in Two Raw-Meat Processing Establishments in Northern Greece

Auteurs: Dimitrios Komodromos, Charalampos Kotzamanidis, Virginia Giantzi, Styliani Pappa, Anna Papa, Antonios Zdragas, Apostolos Angelidis, Daniel Sergelidis
Publié dans: Pathogens, Numéro 11/11, 2022, ISSN 2076-0817
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pathogens11111370

Integrating Global Citizen Science Platforms to Enable Next-Generation Surveillance of Invasive and Vector Mosquitoes

Auteurs: Ryan M. Carney, Connor Mapes, Russanne D. Low, Alex Long, Anne Bowser, David Durieux, Karlene Rivera, Berj Dekramanjian, Frederic Bartumeus, Daniel Guerrero, Carrie E. Seltzer, Farhat Azam, Sriram Chellappan and John R. B. Palmer
Publié dans: Insects, Numéro 13/8, 2022, ISSN 2075-4450
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/insects13080675

Normalisation of SARS-CoV-2 concentrations in wastewater: The use of flow, electrical conductivity and crAssphage

Auteurs: Jeroen Langeveld, Remy Schilperoort, Leo Heijnen, Goffe Elsinga, Claudia E.M. Schapendonk, Ewout Fanoy, Evelien I.T. de Schepper, Marion P.G. Koopmans, Miranda de Graaf and Gertjan Medema
Publié dans: Science of the Total Environment, Numéro 865, 2022, ISSN 0048-9697
Éditeur: Elsevier BV
DOI: 10.1016/j.scitotenv.2022.161196

Timeliness of online COVID-19 reports from official sources

Auteurs: Laura Espinosa, Olesia Altunina, and Marcel Salathé
Publié dans: Frontiers in Public Health, Numéro 10, 2023, ISSN 2296-2565
Éditeur: Future Biologics
DOI: 10.3389/fpubh.2022.1027812

Social Media Use, Self-Efficacy, Perceived Threat, and Preventive Behavior in Times of COVID-19: Results of a Cross-Sectional Study in Pakistan

Auteurs: Qaisar Khalid Mahmood, Sara Rizvi Jafree, Sahifa Mukhtar and Florian Fischer
Publié dans: Frontiers in Pschology, Numéro 12, 2021, ISSN 1664-1078
Éditeur: Frontiers Research Foundation
DOI: 10.3389/fpsyg.2021.562042

Kinetics of Neutralizing Antibodies of COVID-19 Patients Tested Using Clinical D614G, B.1.1.7, and B 1.351 Isolates in Microneutralization Assays

Auteurs: Jenni Virtanen, Ruut Uusitalo, Essi M. Korhonen, Kirsi Aaltonen, Teemu Smura, Suvi Kuivanen, Sari H. Pakkanen, Sointu Mero, Anu Patjas, Marianna Riekkinen, Anu Kantele, Visa Nurmi, Klaus Hedman, Jussi Hepojoki,Tarja Sironen, Eili Huhtamo and Olli Vapalahti
Publié dans: Viruses, Numéro 13/6, 2021, ISSN 1999-4915
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v13060996

ClusTRace, a bioinformatic pipeline for analyzing clusters in virus phylogenies

Auteurs: Ilya Plyusnin1, Phuoc Thien Truong Nguyen, Tarja Sironen, Olli Vapalahti, Teemu Smura and Ravi Kant
Publié dans: BMC Bioinformatics, Numéro 23/196, 2022, ISSN 1471-2105
Éditeur: BioMed Central
DOI: 10.1186/s12859-022-04709-8

Nanobody engineering for SARS-CoV-2 neutralization and detection

Auteurs: Liina Hannula, Suvi Kuivanen, Jonathan Lasham, Ravi Kant, Lauri Kareinen, Mariia Bogacheva, Tomas Strandin, Tarja Sironen, Vivek Sharma, Petri Saviranta, Anja Kipar, Olli Vapalahti, Juha T. Huiskonen, Ilona Rissanen
Publié dans: BioRxiv, 2022, ISSN 2692-8205
Éditeur: Cold Spring Harbor Laboratory Press
DOI: 10.1101/2022.09.14.507920

Experimental Infection and Genetic Characterization of Two Different Capripox Virus Isolates in Small Ruminants

Auteurs: Janika Wolff, Jacqueline King, Tom Moritz, Anne Pohlmann, Donata Hoffmann, Martin Beer, Bernd Hoffmann
Publié dans: Viruses, Numéro 12/10, 2020, Page(s) 1098, ISSN 1999-4915
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v12101098

Experimental SARS-CoV-2 Infection of Bank Voles

Auteurs: Lorenz Ulrich, Anna Michelitsch, Nico Halwe, Kerstin Wernike, Donata Hoffmann, Martin Beer
Publié dans: Emerging Infectious Diseases, Numéro 27/4, 2021, Page(s) 1193-1195, ISSN 1080-6040
Éditeur: US National Center for Infectious Diseases
DOI: 10.3201/eid2704.204945

Phylogenetic Investigation of Norovirus Transmission between Humans and Animals

Auteurs: Nele Villabruna, Ray W. Izquierdo Lara, Judit Szarvas, Marion P. G. Koopmans, Miranda de Graaf
Publié dans: Viruses, Numéro 12/11, 2020, Page(s) 1287, ISSN 1999-4915
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v12111287

COVID-19 in health-care workers in three hospitals in the south of the Netherlands: a cross-sectional study

Auteurs: Reina S Sikkema, Suzan D Pas, David F Nieuwenhuijse, Áine O'Toole, Jaco Verweij, Anne van der Linden, Irina Chestakova, Claudia Schapendonk, Mark Pronk, Pascal Lexmond, Theo Bestebroer, Ronald J Overmars, Stefan van Nieuwkoop, Wouter van den Bijllaardt, Robbert G Bentvelsen, Miranda M L van Rijen, Anton G M Buiting, Anne J G van Oudheusden, Bram M Diederen, Anneke M C Bergmans, Annemiek van der E
Publié dans: The Lancet Infectious Diseases, Numéro 20/11, 2020, Page(s) 1273-1280, ISSN 1473-3099
Éditeur: The Lancet Publishing Group
DOI: 10.1016/s1473-3099(20)30527-2

Diagnostic Potential of a Luminex-Based Coronavirus Disease 2019 Suspension Immunoassay (COVID-19 SIA) for the Detection of Antibodies against SARS-CoV-2

Auteurs: Tove Hoffman, Linda Kolstad, Johanna F. Lindahl, Bo Albinsson, Anders Bergqvist, Bengt Rönnberg and Åke Lundkvist
Publié dans: Viruses, Numéro 13/993, 2021, ISSN 1999-4915
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v13060993

The genetics of highly pathogenic avian influenza viruses of subtype H5 in Germany, 2006–2020

Auteurs: Jacqueline King, Timm Harder, Franz J. Conraths, Martin Beer, Anne Pohlmann
Publié dans: Transboundary and Emerging Diseases, Numéro 68/3, 2021, Page(s) 1136-1150, ISSN 1865-1674
Éditeur: Blackwell-Wiss.-Verl
DOI: 10.1111/tbed.13843

Human Virus Genomes Are Enriched in Conserved Adenine/Thymine/Uracil Multiple Tracts That Pause Polymerase Progression

Auteurs: Emanuela Ruggiero, Enrico Lavezzo, Marco Grazioli, Irene Zanin, Maja Marušič, Janez Plavec, Sara N. Richter and Stefano Toppo
Publié dans: Frontiers in Microbiology, Numéro 13, 2022, ISSN 1664-302X
Éditeur: Frontiers Media
DOI: 10.3389/fmicb.2022.915069

Human West Nile Virus Lineage 2 Infection: Epidemiological, Clinical, and Virological Findings

Auteurs: Monia Pacenti, Alessandro Sinigaglia, Elisa Franchin, Silvana Pagni, Enrico Lavezzo, Fabrizio Montarsi, Gioia Capelli, Luisa Barzon
Publié dans: Viruses, Numéro 12/4, 2020, Page(s) 458, ISSN 1999-4915
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v12040458

Suppression of a SARS-CoV-2 outbreak in the Italian municipality of Vo’

Auteurs: Enrico Lavezzo, Elisa Franchin, Constanze Ciavarella, Gina Cuomo-Dannenburg, Luisa Barzon, Claudia Del Vecchio, Lucia Rossi, Riccardo Manganelli, Arianna Loregian, Nicolò Navarin, Davide Abate, Manuela Sciro, Stefano Merigliano, Ettore De Canale, Maria Cristina Vanuzzo, Valeria Besutti, Francesca Saluzzo, Francesco Onelia, Monia Pacenti, Saverio G. Parisi, Giovanni Carretta, Daniele Donato, Lucia
Publié dans: Nature, Numéro 584/7821, 2020, Page(s) 425-429, ISSN 0028-0836
Éditeur: Nature Publishing Group
DOI: 10.1038/s41586-020-2488-1

Filling the gaps in the global prevalence map of clinical antimicrobial resistance

Auteurs: Rik Oldenkamp, Constance Schultsz, Emiliano Mancini, Antonio Cappuccio
Publié dans: Proceedings of the National Academy of Sciences, Numéro 118/1, 2020, Page(s) e2013515118, ISSN 0027-8424
Éditeur: National Academy of Sciences
DOI: 10.1073/pnas.2013515118

Next-generation diagnostics: virus capture facilitates a sensitive viral diagnosis for epizootic and zoonotic pathogens including SARS-CoV-2

Auteurs: Claudia Wylezich, Sten Calvelage, Kore Schlottau, Ute Ziegler, Anne Pohlmann, Dirk Höper, Martin Beer
Publié dans: Microbiome, Numéro 9/1, 2021, ISSN 2049-2618
Éditeur: BMC
DOI: 10.1186/s40168-020-00973-z

Targeting the NS2B-NS3 protease of tick-borne encephalitis virus withpan-flaviviral protease inhibitors

Auteurs: Dario Akaberi, Amanda Båhlström, Praveen K. Chinthakindi, Tomas Nyman, Anja Sandström, Josef D. Järhult, Navaneethan Palanisamy, Åke Lundkvist and Johan Lennerstrand
Publié dans: Antiviral Research, Numéro 190, 2021, ISSN 0166-3542
Éditeur: Elsevier BV
DOI: 10.1016/j.antiviral.2021.105074

SARS-CoV-2 spike D614G change enhances replication and transmission

Auteurs: Bin Zhou, Tran Thi Nhu Thao, Donata Hoffmann, Adriano Taddeo, Nadine Ebert, Fabien Labroussaa, Anne Pohlmann, Jacqueline King, Silvio Steiner, Jenna N. Kelly, Jasmine Portmann, Nico Joel Halwe, Lorenz Ulrich, Bettina Salome Trüeb, Xiaoyu Fan, Bernd Hoffmann, Li Wang, Lisa Thomann, Xudong Lin, Hanspeter Stalder, Berta Pozzi, Simone de Brot, Nannan Jiang, Dan Cui, Jaber Hossain, Malania M. Wilson,
Publié dans: Nature, Numéro 592/7852, 2021, Page(s) 122-127, ISSN 0028-0836
Éditeur: Nature Publishing Group
DOI: 10.1038/s41586-021-03361-1

Co‐infections: Simultaneous detections of West Nile virus and Usutu virus in birds from Germany

Auteurs: Pauline Dianne Santos, Friederike Michel, Claudia Wylezich, Dirk Höper, Markus Keller, Cora M. Holicki, Claudia A. Szentiks, Martin Eiden, Aemero Muluneh, Antonie Neubauer‐Juric, Sabine Thalheim, Anja Globig, Martin Beer, Martin H. Groschup, Ute Ziegler
Publié dans: Transboundary and Emerging Diseases, 2021, ISSN 1865-1674
Éditeur: Blackwell-Wiss.-Verl
DOI: 10.1111/tbed.14050

Neutralising reactivity against SARS-CoV-2 Delta and Omicron variants by vaccination and infection history

Auteurs: Enrico Lavezzo, Monia Pacenti, Laura Manuto, Caterina Boldrin, Margherita Cattai, Marco Grazioli, Federico Bianca, Margherita Sartori, Federico Caldart, Gioele Castelli, Michele Nicoletti, Eleonora Nieddu, Elisa Salvadoretti, Beatrice Labella, Ludovico Fava, Maria Cristina Vanuzzo, Vittoria Lisi, Maria Antonello, Carmela Ileana Grimaldi, Chiara Zulian, Claudia Del Vecchio, Mario Plebani, Andrea Pa
Publié dans: Genome Medicine, Numéro 14/61, 2022, ISSN 1756-994X
Éditeur: BioMed Central
DOI: 10.1186/s13073-022-01066-2

Highly pathogenic avian influenza virus incursions of subtype H5N8, H5N5, H5N1, H5N4, and H5N3 in Germany during 2020-21

Auteurs: Jacqueline King, Timm Harder, Anja Globig, Lina Stacker, Anne Günther, Christian Grund, Martin Beer, Anne Pohlmann
Publié dans: Virus Evolution, Numéro 8/1, 2022, ISSN 2057-1577
Éditeur: Oxford University Press
DOI: 10.1093/ve/veac035

The next phase of SARS-CoV-2 surveillance: real-time molecular epidemiology

Auteurs: Bas B Oude Munnink, Nathalie Worp, David F Nieuwenhuijse, Reina S Sikkema, Bart Haagmans, Ron A M Fouchier, Marion Koopmans
Publié dans: Nature Medicine, Numéro 27/9, 2021, ISSN 1078-8956
Éditeur: Nature Publishing Group
DOI: 10.1038/s41591-021-01472-w

Deep learning identification for citizen science surveillance of tiger mosquitoes

Auteurs: Balint Armin Pataki, Joan Garriga, Roger Eritja, John R. B. Palmer, Frederic Bartumeus, Istvan Csabai
Publié dans: Scientific Reports, Numéro 11/1, 2021, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/s41598-021-83657-4

West Nile fever upsurge in a Greek regional unit, 2020

Auteurs: Anna Papa, Katerina Tsioka, Sandra Gewehr, Stella Kalaitzopouou, Danai Pervanidou, Anna Vakali, Chrysovalantou Kefaloudi, Styliani Pappa, Xanthoula Louka, Spiros Mourelatos
Publié dans: Acta Tropica, Numéro 221, 2021, Page(s) 106010, ISSN 0001-706X
Éditeur: Elsevier BV
DOI: 10.1016/j.actatropica.2021.106010

Transatlantic spread of highly pathogenic avian influenza H5N1 by wild birds from Europe to North America in 2021

Auteurs: V. Caliendo; N. S. Lewis; A. Pohlmann; S.R. Baillie; A.C. Banyard; M. Beer; I.H. Brown; R.A.M. Fouchier; R.D.E. Hansen; T.K. Lameris; A.S. Lang; S. Laurendeau; O. Lung; G. Robertson; H. van der Jeugd; T.N. Alkie; K. Thorup; M.L. van Toor; J. Waldenström; C. Yason; T. Kuiken; Y. Berhane
Publié dans: Scientific Reports, Numéro 45, 2022, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1101/2022.01.13.476155

A 10-Minute “Mix and Read” Antibody Assay for SARS-CoV-2

Auteurs: Juuso Rusanen, Lauri Kareinen, Lev Levanov, Sointu Mero, Sari H. Pakkanen, Anu Kantele, Fatima Amanat, Florian Krammer, Klaus Hedman, Olli Vapalahti and Jussi Hepojoki
Publié dans: Viruses, Numéro 13/2, 2021, ISSN 1999-4915
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v13020143

Introduction and Rapid Spread of SARS-CoV-2 Omicron Variant and Dynamics of BA.1 and BA.1.1 Sublineages, Finland, December 2021

Auteurs: Hanna Vauhkonen, Phuoc Truong Nguyen, Ravi Kant, Ilja Plyusnin, Mert Erdin, Satu Kurkela, Hanna Liimatainen, Niina Ikonen, Soile Blomqvist, Kirsi Liitsola, Erika Lindh, Otto Helve, Hanna Jarva, Raisa Loginov, Aino Palva, Tiina Hannunen, Sari Hannula, Mikko Parry, Paula Kauppi, Antti Vaheri, Tarja Sironen, Maija Lappalainen, Carita Savolainen-Kopra, Teemu Smura, Olli Vapalahti
Publié dans: Emerging Infectious Diseases, Numéro 28/6, 2022, ISSN 1080-6040
Éditeur: US National Center for Infectious Diseases
DOI: 10.3201/eid2806.220515

Common Laboratory Mice Are Susceptible to Infection with the SARS-CoV-2 Beta Variant

Auteurs: Ravi Kant, Lauri Kareinen, Teemu Smura, Tobias L. Freitag, Sawan Kumar Jha, Kari Alitalo, Seppo Meri, Tarja Sironen, Kalle Saksela, Tomas Strandin, Anja Kipar and Olli Vapalahti
Publié dans: Viruses, Numéro 13/11, 2021, ISSN 1999-4915
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v13112263

Evaluation of Production Lots of a Rapid Point-of-Care Lateral Flow Serological Test Intended for Identification of IgM and IgG against the N-Terminal Part of the Spike Protein (S1) of SARS-CoV-2

Auteurs: Tove Hoffman, Linda Kolstad, Bengt Rönnberg and Åke Lundkvist
Publié dans: Viruses, Numéro 13/6, 2021, ISSN 1999-4915
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v13061043

Rapid SARS-CoV-2 whole-genome sequencing and analysis for informed public health decision-making in the Netherlands

Auteurs: Bas B. Oude Munnink, David F. Nieuwenhuijse, Mart Stein, Áine O’Toole, Manon Haverkate, Madelief Mollers, Sandra K. Kamga, Claudia Schapendonk, Mark Pronk, Pascal Lexmond, Anne van der Linden, Theo Bestebroer, Irina Chestakova, Ronald J. Overmars, Stefan van Nieuwkoop, Richard Molenkamp, Annemiek A. van der Eijk, Corine GeurtsvanKessel, Harry Vennema, Adam Meijer, Andrew Rambaut, Jaap van Disse
Publié dans: Nature Medicine, Numéro 26/9, 2020, Page(s) 1405-1410, ISSN 1078-8956
Éditeur: Nature Publishing Group
DOI: 10.1038/s41591-020-0997-y

Temporal Dynamics of Influenza A(H5N1) Subtype before and after the Emergence of H5N8.

Auteurs: Amer F, Li R, Rabie N, El-Husseiny MH, Yehia N, Hagag NM, Samy M, Selim A, Hassan MK, Hassan WMM, Arafa AS, Lundkvist Å, Shahein MA, Naguib MM.
Publié dans: Viruses, Numéro 13/8, 2021, ISSN 1999-4915
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v13081565

Multi‐species ELISA for the detection of antibodies against SARS‐CoV‐2 in animals

Auteurs: Kerstin Wernike, Andrea Aebischer, Anna Michelitsch, Donata Hoffmann, Conrad Freuling, Anne Balkema‐Buschmann, Annika Graaf, Thomas Müller, Nikolaus Osterrieder, Melanie Rissmann, Dennis Rubbenstroth, Jacob Schön, Claudia Schulz, Jakob Trimpert, Lorenz Ulrich, Asisa Volz, Thomas Mettenleiter, Martin Beer
Publié dans: Transboundary and Emerging Diseases, Numéro 68/4, 2021, Page(s) 1779-1785, ISSN 1865-1674
Éditeur: Blackwell-Wiss.-Verl
DOI: 10.1111/tbed.13926

Genetic data in the fight against pandemics

Auteurs: Ágnes Becsei, Orsolya Anna Pipek, Péter Pollner, István Csabai
Publié dans: AK Journals, Numéro 2/1, 2021, Page(s) 12-16, ISSN 2732-2688
Éditeur: Scientia et Securitas
DOI: 10.1556/112.2021.00006

One Day in Denmark: Comparison of Phenotypic and Genotypic Antimicrobial Susceptibility Testing in Bacterial Isolates From Clinical Settings

Auteurs: Ana Rita Rebelo, Valeria Bortolaia, Pimlapas Leekitcharoenphon, Dennis Schrøder Hansen, Hans Linde Nielsen, Svend Ellermann-Eriksen, Michael Kemp, Bent Løwe Røder, Niels Frimodt-Møller, Turid Snekloth Søndergaard, John Eugenio Coia, Claus Østergaard, Henrik Westh and Frank M. Aarestrup
Publié dans: Frontiers in Microbiology, Numéro 13, 2022, ISSN 1664-302X
Éditeur: Frontiers Media
DOI: 10.3389/fmicb.2022.804627

CRHP Finder, a webtool for the detection of clarithromycin resistance in Helicobacter pylori from whole‐genome sequencing data

Auteurs: Melodi Yusibova, Henrik Hasman, Philip Thomas Lanken Conradsen Clausen, Frank Imkamp, Karoline Wagner, Leif Percival Andersen
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Clusters of science and health related Twitter users become more isolated during the COVID-19 pandemic

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Wolbachia prevalence in the vector species Culex pipiens and Culex torrentium in a Sindbis virus-endemic region of Sweden

Auteurs: Alexander Bergman; Jenny C. Hesson
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Sindbis Virus Infection in Non-Blood-Fed Hibernating Culex pipiens Mosquitoes in Sweden

Auteurs: Alexander Bergman, Emma Dahl, Åke Lundkvist and Jenny C. Hesson
Publié dans: Viruses, Numéro 12/12, 2020, ISSN 1999-4915
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Rapid multiplex MinION nanopore sequencing workflow for Influenza A viruses

Auteurs: Jacqueline King, Timm Harder, Martin Beer, Anne Pohlmann
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Novel NGS pipeline for virus discovery from a wide spectrum of hosts and sample types

Auteurs: Ilya Plyusnin, Ravi Kant, Anne J Jääskeläinen, Tarja Sironen, Liisa Holm, Olli Vapalahti, Teemu Smura
Publié dans: Virus Evolution, Numéro 6/2, 2020, ISSN 2057-1577
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Modeling the impact of surveillance activities combined with physical distancing interventions on COVID-19 epidemics at a local level

Auteurs: Guan-Jhou Chen, John R B Palmer, Frederic Bartumeus and Ana Alba-Casals
Publié dans: Infectious Disease Modelling, Numéro 7, 2022, ISSN 2468-0427
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Circulating microRNA signatures associated with disease severity and outcome in COVID-19 patients

Auteurs: Alessandra Giannella, Silvia Riccetti, Alessandro Sinigaglia, Chiara Piubelli, Elisa Razzaboni, Piero Di Battista, Matteo Agostini, Emanuela Dal Molin, Riccardo Manganelli, Federico Gobbi, Giulio Ceolotto, Luisa Barzon
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ResFinder – an open online resource for identification of antimicrobial resistance genes in next-generation sequencing data and prediction of phenotypes from genotypes

Auteurs: Alfred Ferrer Florensa, Rolf Sommer Kaas, Philip Thomas Lanken Conradsen Clausen, Derya Aytan-Aktug and Frank M. Aarestrup
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Image-based & machine learning-guided multiplexed serology test for SARS-CoV-2

Auteurs: Vilja Pietiäinen, Minttu Polso, Ede Migh, Christian Guckelsberger, Maria Harmati, Akos Diosdi, Laura Turunen, Antti Hassinen, Swapnil Potdar, Annika Koponen, Edina Gyukity Sebestyen, Ferenc Kovacs, Andras Kriston, Reka Hollandi, Katalin Burian, Gabriella Terhes, Adam Visnyovszki, Eszter Fodor, Zsombor Lacza, Anu Kantele, Pekka Kolehmainen, Laura Kakkola, Tomas Strandin, Lev Levanov, Olli Kallion
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Éditeur: Cold Spring Harbor Laboratory
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Incidence Trends for SARS-CoV-2 Alpha and Beta Variants, Finland, Spring 2021

Auteurs: Ravi Kant, Phuoc Truong Nguyen, Soile Blomqvist, Mert Erdin, Hussein Alburkat, Maija Suvanto, Fathiah Zakham, Veera Salminen, Viktor Olander, Minna Paloniemi, Leena Huhti, Sara Lehtinen, Bruno Luukinen, Hanna Jarva, Hannimari Kallio-Kokko, Satu Kurkela, Maija Lappalainen, Hanna Liimatainen, Sari Hannula, Jani Halkilahti, Jonna Ikonen, Niina Ikonen, Otto Helve, Marianne Gunell, Tytti Vuorinen, Ilya
Publié dans: Emerging Infectious Diseases, Numéro 27/12, 2021, ISSN 1080-6040
Éditeur: US National Center for Infectious Diseases
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Mis-tweeting communication: a Vaccine Hesitancy analysis among twitter users in Italy

Auteurs: Davide Gori, Francesco Durazzi, Marco Montalti, Zeno Di Valerio, Chiara Reno, Maria Pia Fantini, Daniel Remondini
Publié dans: Acta Biomedica, Numéro 92/6, 2021, ISSN 0392-4203
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SARS-CoV-2 in hospital indoor environments is predominantly non-infectious

Auteurs: Janina Krambrich, Dario Akaberi, Jiaxin Ling, Tove Hofman, Lennart Svensson, Marie Hagbom and Åke Lundkvist
Publié dans: Virology Journal, Numéro 18/109, 2021, ISSN 1743-422x
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Emergence of ST39 carbapenem-resistant Klebsiella pneumoniae producing VIM-1 and KPC-2

Auteurs: Theodoros Karampatakis, Charalampos Zarras, Styliani Pappa, Eleni Vagdatli, Elias Iosifidis, Emmanuel Roilides, Anna Papa
Publié dans: Microbial Pathofenesis, Numéro 162, 2022, ISSN 0882-4010
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Predicting Spatial Patterns of Sindbis Virus (SINV) Infection Risk in Finland Using Vector, Host and Environmental Data

Auteurs: Ruut Uusitalo, Mika Siljander, C. Lorna Culverwell, Guy Hendrickx, Andreas Lindén, Timothée Dub, Juha Aalto, Jussi Sane, Cedric Marsboom, Maija T. Suvanto, Andrea Vajda, Hilppa Gregow, Essi M. Korhonen, Eili Huhtamo, Petri Pellikka, Olli Vapalahti
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Transmission of SARS-CoV-2 on mink farms between humans and mink and back to humans

Auteurs: Bas B. Oude Munnink, Reina S. Sikkema, David F. Nieuwenhuijse, Robert Jan Molenaar, Emmanuelle Munger, Richard Molenkamp, Arco van der Spek, Paulien Tolsma, Ariene Rietveld, Miranda Brouwer, Noortje Bouwmeester-Vincken, Frank Harders, Renate Hakze-van der Honing, Marjolein C. A. Wegdam-Blans, Ruth J. Bouwstra, Corine GeurtsvanKessel, Annemiek A. van der Eijk, Francisca C. Velkers, Lidwien A. M. Sm
Publié dans: Science, Numéro 371/6525, 2021, Page(s) 172-177, ISSN 0036-8075
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A curated data resource of 214K metagenomes for characterization of the global antimicrobial resistome

Auteurs: Hannah-Marie Martiny, Patrick Munk,Christian Brinch, Frank M. Aarestrup and Thomas N. Petersen
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Mosquito alert: leveraging citizen science to create a GBIF mosquito occurrence dataset

Auteurs: Živko Južnič-Zonta, Isis Sanpera-Calbet, Roger Eritja, John R.B. Palmer, Agustí Escobar, Joan Garriga, Aitana Oltra, Alex Richter-Boix, Francis Schaffner, Alessandra della Torre, Miguel Ángel Miranda, Marion Koopmans, Luisa Barzon, Frederic Bartumeus Ferre
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Differential plasmacytoid dendritic cell phenotype and type I Interferon response in asymptomatic and severe COVID-19 infection

Auteurs: Martina Severa, Roberta A. Diotti, Marilena P. Etna, Fabiana Rizzo, Stefano Fiore, Daniela Ricci, Marco Iannetta, Alessandro Sinigaglia, Alessandra Lodi, Nicasio Mancini, Elena Criscuolo, Massimo Clementi, Massimo Andreoni, Stefano Balducci, Luisa Barzon, Paola Stefanelli, Nicola Clementi, Eliana M. Coccia
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Modelling West Nile Virus and Usutu Virus Pathogenicity in Human Neural Stem Cells

Auteurs: Silvia Riccetti, Alessandro Sinigaglia, Giovanna Desole, Norbert Nowotny, Marta Trevisan, Luisa Barzon
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Adaptation, spread and transmission of SARS-CoV-2 in farmed minks and associated humans in the Netherlands

Auteurs: Lu Lu, Reina S Sikkema, Francisca C Velkers, David F Nieuwenhuijse, Egil A J Fischer, Paola A Meijer, Noortje Bouwmeester-Vincken, Ariene Rietveld, Marjolijn C A Wegdam-Blans, Paulien Tolsma, Marco Koppelman, Lidwien A M Smit, Renate W Hakze-van der Honing , Wim H M van der Poel, Arco N van der Spek, Marcel A H Spierenburg, Robert Jan Molenaar, Jan de Rond, Marieke Augustijn, Mark Woolhouse, J Arj
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Connect to Protect: Dynamics and Genetic Connections of Highly Pathogenic Avian Influenza Outbreaks in Poultry from 2016 to 2021 in Germany

Auteurs: King, Jacqueline, Christoph Staubach, Christiane Lüder, Susanne Koethe, Anne Günther, Lina Stacker, Dennis Rubbenstroth, Klaas Dietze, Christian Grund, Franz J. Conraths, Timm Harder, Martin Beer, and Anne Pohlmann
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Detection of antimicrobial resistance genes in urban air

Auteurs: Ágnes Becsei, Norbert Solymosi, István Csabai, Donát Magyar
Publié dans: Microbiology Open, 2021, ISSN 2045-8827
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Rapid SARS-CoV-2 Intra-Host and Within-Household Emergence of Novel Haplotypes

Auteurs: Manuto, Laura, Marco Grazioli, Andrea Spitaleri, Paolo Fontana, Luca Bianco, Luigi Bertolotti, Martina Bado, Giorgia Mazzotti, Federico Bianca, Francesco Onelia, Giovanni Lorenzin, Fabio Simeoni, Dejan Lazarevic, Elisa Franchin, Claudia Del Vecchio, Ilaria Dorigatti, Giovanni Tonon, Daniela Maria Cirillo, Enrico Lavezzo, Andrea Crisanti, and Stefano Toppo
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Early initiation of the respiratory syncytial virus season in 2021-2022, Greece

Auteurs: Styliani Pappa, Katerina Haidopoulou, Charalampos Zarras, Eleni Theodorakou, Eleni Papadimitriou, Elias Iosifidis, Ioanna Gkeka, Konstantina Stoikou, Eleni Vagdatli, Lemonia Skoura and Anna Papa
Publié dans: Journal of Medical Virology, 2022, ISSN 0146-6615
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A glimpse of antimicrobial resistance gene diversity in kefir and yoghurt

Auteurs: Adrienn Gréta Tóth, István Csabai, Gergely Maróti, Ákos Jerzsele, Attila Dubecz, Árpád V. Patai, Maura Fiona Judge, Sára Ágnes Nagy, László Makrai, Krisztián Bányai, Géza Szita, Norbert Solymosi
Publié dans: Scientific Reports, Numéro 10/1, 2020, ISSN 2045-2322
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Autochthonous dengue outbreak in Italy 2020: Clinical, virological and entomological findings

Auteurs: Luisa Barzon, Federico Gobbi, Gioia Capelli, Fabrizio Montarsi, Simone Martini, Silvia Riccetti, Alessandro Sinigaglia, Monia Pacenti, Giacomina Pavan, Mario Rassu, Maria Teresa Padovan, Vinicio Manfrin, Francesca Zanella, Francesca Russo, Felice Foglia, Luca Lazzarini
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Neuropilin-1 facilitates SARS-CoV-2 cell entry and infectivity

Auteurs: Ludovico Cantuti-Castelvetri, Ravi Ojha, Liliana D. Pedro, Minou Djannatian, Jonas Franz, Suvi Kuivanen, Franziska van der Meer, Katri Kallio, Tuğberk Kaya, Maria Anastasina, Teemu Smura, Lev Levanov, Leonora Szirovicza, Allan Tobi, Hannimari Kallio-Kokko, Pamela Österlund, Merja Joensuu, Frédéric A. Meunier, Sarah J. Butcher, Martin Sebastian Winkler, Brit Mollenhauer, Ari Helenius, Ozgun Gok
Publié dans: Science, Numéro 370/6518, 2020, Page(s) 856-860, ISSN 0036-8075
Éditeur: American Association for the Advancement of Science
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Droplet digital RT-PCR to detect SARS-CoV-2 signature mutations of variants of concern in wastewater

Auteurs: Leo Heijnen, Goffe Elsinga, Miranda de Graaf, Richard Molenkamp, Marion P G Koopmans and Gertjan Medema
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Susceptibility of Raccoon Dogs for Experimental SARS-CoV-2 Infection

Auteurs: Conrad M. Freuling, Angele Breithaupt, Thomas Müller, Julia Sehl, Anne Balkema-Buschmann, Melanie Rissmann, Antonia Klein, Claudia Wylezich, Dirk Höper, Kerstin Wernike, Andrea Aebischer, Donata Hoffmann, Virginia Friedrichs, Anca Dorhoi, Martin H. Groschup, Martin Beer, Thomas C. Mettenleiter
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Highly Divergent SARS-CoV-2 Alpha Variant in Chronically Infected Immunocompromised Person

Auteurs: Bas B Oude Munnink, Roel H T Nijhuis, Nathalie Worp, Marjan Boter, Babette Weller, Babs E Verstrepen, Corine GeurtsvanKessel, Maarten F Corsten, Anne Russcher and Marion Koopmans
Publié dans: Emerging Infectious Diseases, Numéro 28/9, 2022, ISSN 1080-6040
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Global Distribution of mcr Gene Variants in 214K Metagenomic Samples

Auteurs: Hannah-Marie Martiny, Patrick Munk, Christian Brinch, Judit Szarvas, Frank M Aarestrup, Thomas Nordahl Petersen
Publié dans: mSystems, Numéro 7/2, 2022, ISSN 2379-5077
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Early start of seasonal transmission and co-circulation of West Nile virus lineage 2 and a newly introduced lineage 1 strain in northern Italy, June 2022

Auteurs: Barzon L, Montarsi F, Quaranta E, Monne I, Pacenti M, Michelutti A, Toniolo F, Danesi P, Marchetti G, Gobbo F, Sinigaglia A, Riccetti S, Dal Molin E, Favero L, Russo F, Capelli G.
Publié dans: Eurosurveillance, Numéro 27/29/21, 2022, ISSN 1560-7917
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The phylodynamics of SARS-CoV-2 during 2020 in Finland

Auteurs: Phuoc Truong Nguyen, Ravi Kant, Frederik Van den Broeck, Maija T. Suvanto, Hussein Alburkat, Jenni Virtanen, Ella Ahvenainen, Robert Castren, Samuel L. Hong, Guy Baele, Maarit J. Ahava, Hanna Jarva, Suvi Tuulia Jokiranta, Hannimari Kallio-Kokko, Eliisa Kekäläinen, Vesa Kirjavainen, Elisa Kortela, Satu Kurkela, Maija Lappalainen, Hanna Liimatainen, Marc A. Suchard, Sari Hannula, Pekka Ellonen, Ta
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West Nile Virus in Culex Mosquitoes in Central Macedonia, Greece, 2022

Auteurs: Katerina Tsioka, Sandra Gewehr, Styliani Pappa, Stella Kalaitzopoulou, Konstantina Stoikou, Spiros Mourelatos and Anna Papa
Publié dans: Viruses, Numéro 15/1, 2023, ISSN 1999-4915
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Synergistic Block of SARS-CoV-2 Infection by Combined Drug Inhibition of the Host Entry Factors PIKfyve Kinase and TMPRSS2 Protease

Auteurs: Alex J B Kreutzberger, Anwesha Sanyal, Ravi Ojha, Jesse D Pyle, Olli Vapalahti, Giuseppe Balistreri, Tom Kirchhausen
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Scaling neighbor joining to one million taxa with dynamic and heuristic neighbor joining

Auteurs: Philip T L C Clausen
Publié dans: Bioinformatics, Numéro 39/1, 2023, ISSN 1367-4803
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At the tip of an iceberg: citizen science and active surveillance collaborating to broaden the known distribution of Aedes japonicus in Spain

Auteurs: Roger Eritja, Sarah Delacour-Estrella, Ignacio Ruiz-Arrondo, Mikel A. González, Carlos Barceló, Ana L. García-Pérez, Javier Lucientes, Miguel Á. Miranda, Frederic Bartumeus
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The central role of Italy in the spatial spread of USUTU virus in Europe

Auteurs: B Zecchin, A Fusaro, A Milani, A Schivo, S Ravagnan, S Ormelli, C Mavian, A Michelutti, F Toniolo, L Barzon, I Monne, G Capelli
Publié dans: Virus Evolution, Numéro 7/1, 2021, ISSN 2057-1577
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Infections with highly pathogenic avian influenza A virus (HPAIV) H5N8 in harbor seals at the German North Sea coast, 2021

Auteurs: Alexander Postel, Jacqueline King, Franziska K Kaiser, Johanna Kennedy, Mara Sophie Lombardo, Wencke Reineking, Madeleine de le Roi, Timm Harder, Anne Pohlmann, Thomas Gerlach, Guus Rimmelzwaan, Simon Rohner, Lotte C Striewe, Stephanie Gross, Luca A Schick, Jana C Klink, Katharina Kramer, Albert D M E Osterhaus, Martin Beer, Wolfgang Baumgärtner, Ursula Siebert and Paul Becher
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Automated download and clean-up of family-specific databases for kmer-based virus identification

Auteurs: Rosa L Allesøe, Camilla K Lemvigh, My V T Phan, Philip T L C Clausen, Alfred F Florensa, Marion P G Koopmans, Ole Lund, Matthew Cotten
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Antimicrobial resistance determinants in silage

Auteurs: Sára Ágnes Nagy, Adrienn Gréta Tóth, Márton Papp, Selçuk Kaplan & Norbert Solymosi
Publié dans: Scientific Reports, Numéro 12/5243, 2022, ISSN 2045-2322
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Comparative pathogenesis of COVID-19, MERS, and SARS in a nonhuman primate model

Auteurs: Barry Rockx, Thijs Kuiken, Sander Herfst, Theo Bestebroer, Mart M. Lamers, Bas B. Oude Munnink, Dennis de Meulder, Geert van Amerongen, Judith van den Brand, Nisreen M. A. Okba, Debby Schipper, Peter van Run, Lonneke Leijten, Reina Sikkema, Ernst Verschoor, Babs Verstrepen, Willy Bogers, Jan Langermans, Christian Drosten, Martje Fentener van Vlissingen, Ron Fouchier, Rik de Swart, Marion Koopmans,
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History and classification of Aigai virus (formerly Crimean-Congo haemorrhagic fever virus genotype VI)

Auteurs: Anna Papa, Marco Marklewitz, Sofia Paraskevopoulou, Aura R. Garrison, Sergey V. Alkhovsky, Tatjana Avšič-Županc, Dennis A. Bente, Éric Bergeron, Felicity Burt, Nicholas Di Paola, Koray Ergünay, Roger Hewson, Ali Mirazimi, Amadou Alpha Sall, Jessica R. Spengler, Thomas S. Postler, Gustavo Palacios, and Jens H. Kuhn
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Identification of mutations in SARS-CoV-2 PCR primer regions

Auteurs: Anikó Mentes, Krisztián Papp, Dávid Visontai, József Stéger, VEO Technical Working Group, István Csabai, Anna Medgyes-Horváth and Orsolya Anna Pipek
Publié dans: Scientific Reports, Numéro 12, 2022, ISSN 2045-2322
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COVID-19 Neuropathology: evidence for SARS-CoV-2 invasion of Human Brainstem Nuclei

Auteurs: Aron Emmi, Stefania Rizzo, Luisa Barzon, Michele Sandre, Elisa Carturan, Alessandro Sinigaglia, Silvia Riccetti, Mila della Barbera, Rafael Boscolo-Berto, Patrizia Cocco, Veronica Macchi, Angelo Antonini, Monica De Gaspari, Cristina Basso, Raffaele De Caro, Andrea Porzionato
Publié dans: BioRxiv, 2022, ISSN 2692-8205
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Antibodies against SARS-CoV-2 Suggestive of Single Events of Spillover to Cattle, Germany

Auteurs: Kerstin Wernike, Jens Böttcher, Silke Amelung, Kerstin Albrecht, Tanja Gärtner, Karsten Donat, and Martin Beer
Publié dans: Emerging Infectious Diseases, Numéro 28/9, 2022, ISSN 1080-6040
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Natural diversity of the honey bee (Apis mellifera) gut bacteriome in various climatic and seasonal states

Auteurs: Márton Papp, László Békési, Róbert Farkas, László Makrai, Maura Fiona Judge, Gergely Maróti, Dóra Tőzsér, Norbert Solymosi
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Genomic monitoring of SARS-CoV-2 uncovers an Nsp1 deletion variant that modulates type I interferon response

Auteurs: Jing-wen Lin, Chao Tang, Han-cheng Wei, Baowen Du, Chuan Chen, Minjin Wang, Yongzhao Zhou, Ming-xia Yu, Lu Cheng, Suvi Kuivanen, Natacha S. Ogando, Lev Levanov, Yuancun Zhao, Chang-ling Li, Ran Zhou, Zhidan Li, Yiming Zhang, Ke Sun, Chengdi Wang, Li Chen, Xia Xiao, Xiuran Zheng, Sha-sha Chen, Zhen Zhou, Ruirui Yang, Dan Zhang, Mengying Xu, Junwei Song, Danrui Wang, Yupeng Li, ShiKun Lei, Wanqin Ze
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Are We Ready for the Arrival of the New COVID-19 Vaccinations? Great Promises and Unknown Challenges Still to Come

Auteurs: Davide Gori, Chiara Reno, Daniel Remondini, Francesco Durazzi and Maria Pia Fantini
Publié dans: Vaccines, Numéro 9(2), 2021, ISSN 2078-2489
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
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Sindbis virus outbreak and evidence for geographical expansion in Finland, 2021

Auteurs: Maija T Suvanto, Ruut Uusitalo, Eveline Otte im Kampe, Tytti Vuorinen, Satu Kurkela, Olli Vapalahti, Timothée Dub, Eili Huhtamo and Essi M Korhonen
Publié dans: Euro Surveillance, Numéro 27/31, 2022, ISSN 1025-496X
Éditeur: Centre Europeen pour la Surveillance Epidemiologique du SIDA
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Mobile Antimicrobial Resistance Genes in Probiotics

Auteurs: Adrienn Gréta Tóth, István Csabai, Maura Fiona Judge, Gergely Maróti, Ágnes Becsei, Sándor Spisák, and Norbert Solymosi
Publié dans: Antibiotics, Numéro 10/11, 2021, ISSN 2078-2489
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/antibiotics10111287

Occurrence of Antibodies against SARS-CoV-2 in the Domestic Cat Population of Germany

Auteurs: Anna Michelitsch, Donata Hoffmann, Kerstin Wernike, Martin Beer
Publié dans: Vaccines, Numéro 8/4, 2020, Page(s) 772, ISSN 2076-393X
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/vaccines8040772

Association between guilds of birds in the African-Western Palaearctic region and the tick species Hyalomma rufipes, one of the main vectors of Crimean-Congo hemorrhagic fever virus

Auteurs: Tove Hoffman, Laura G. Carra, Patrik Öhagen, Thord Fransson, Christos Barboutis, Dario Piacentini, Jordi Figuerola, Yosef Kiat, Alejandro Onrubia, Thomas G.T. Jaenson, Kenneth Nilsson, Åke Lundkvist, and Björn Olsen
Publié dans: One Health, 2021, ISSN 2352-7714
Éditeur: Elsevier
DOI: 10.1016/j.onehlt.2021.100349

Novel HPAIV H5N8 Reassortant (Clade 2.3.4.4b) Detected in Germany

Auteurs: Jacqueline King, Christoph Schulze, Andreas Engelhardt, Andreas Hlinak, Sara-Lisa Lennermann, Kerstin Rigbers, Jasmin Skuballa, Christoph Staubach, Thomas C. Mettenleiter, Timm Harder, Martin Beer, Anne Pohlmann
Publié dans: Viruses, Numéro 12/3, 2020, Page(s) 281, ISSN 1999-4915
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v12030281

Seasonal coronavirus-specific B cells with limited SARS-CoV-2 cross-reactivity dominate the IgG response in severe COVID-19.

Auteurs: Muriel Aguilar-Bretones; Brenda M. Westerhuis; Matthijs P. Raadsen; Erwin de Bruin; Felicity D. Chandler; Nisreen M.A. Okba; Bart L. Haagmans; Thomas Langerak; Henrik Endeman; Johannes P. C. van den Akker; Diederik Gommers; Eric C. M. van Gorp; Corine H. GeurtsvanKessel; Rory D. de Vries; Ron A. M. Fouchier; Barry Rockx; Marion Koopmans; Gijsbert P. van Nierop
Publié dans: Journal of Clinical Investigation, Numéro 51, 2021, ISSN 1558-8238
Éditeur: American Society for Clinical Investigation
DOI: 10.1172/jci150613

Antigenic cartography of SARS-CoV-2 reveals that Omicron BA.1 and BA.2 are antigenically distinct.

Auteurs: Mykytyn, Anna Z; Rissmann, Melanie; Kok, Adinda; Rosu, Miruna E; Schipper, Debby; Breugem, Tim I; van den Doel, Petra B; Chandler, Felicity; Bestebroer, Theo; de Wit, Maurice; van Royen, Martin E; Molenkamp, Richard; Oude Munnink, Bas B; de Vries, Rory D; GeurtsvanKessel, Corine; Smith, Derek J; Koopmans, Marion P G; Rockx, Barry; Lamers, Mart M; Fouchier, Ron A M; Haagmans, Bart L.
Publié dans: Science Immunology, Numéro 7/75, 2022, ISSN 2470-9468
Éditeur: AAAS
DOI: 10.1126/sciimmunol.abq4450

Longitudinal analysis of T cell receptor repertoires reveals shared patterns of antigen-specific response to SARS-CoV-2 infection

Auteurs: Rachel M Gittelman, Enrico Lavezzo, Thomas M Snyder, H Jabran Zahid, Cara L Carty, Rebecca Elyanow, Sudeb Dalai, Ilan Kirsch, Lance Baldo, Laura Manuto, Elisa Franchin, Claudia Del Vecchio, Monia Pacenti, Caterina Boldrin, Margherita Cattai, Francesca Saluzzo, Andrea Padoan, Mario Plebani, Fabio Simeoni, Jessica Bordini, Nicola I Lorè, Dejan Lazarević, Daniela M Cirillo, Paolo Ghia, Stefano Topp
Publié dans: JCI Insight, 2022, ISSN 2077-0383
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.1172/jci.insight.151849

Evaluation of the use of alternative sample types for mosquito-borne flavivirus surveillance: Using Usutu virus as a model

Auteurs: Nnomzie C. Atama, Irina V. Chestakova, Erwin de Bruin, Tijs J. van den Berg, Emmanuelle Munger, Chantal Reusken, Bas B. Oude Munnink, Henk van der Jeugd, Judith M.A. van den Brand, Marion P.G. Koopmans and Reina S. Sikkema
Publié dans: One Health, Numéro 15, 2022, ISSN 2352-7714
Éditeur: Elsevier
DOI: 10.1016/j.onehlt.2022.100456

MINTyper: an outbreak-detection method for accurate and rapid SNP typing of clonal clusters with noisy long reads

Auteurs: Malte B Hallgren, Søren Overballe-Petersen, Ole Lund, Henrik Hasman, Philip T L C Clausen
Publié dans: Biology Methods and Protocols, Numéro 6/1, 2021, ISSN 2396-8923
Éditeur: Oxford Academic
DOI: 10.1093/biomethods/bpab008

Experimental Infection of Mink with SARS-COV-2 Omicron Variant and Subsequent Clinical Disease

Auteurs: Jenni Virtanen, Kirsi Aaltonen, Kristel Kegler, Vinaya Venkat, Thanakorn Niamsap, Lauri Kareinen, Rasmus Malmgren, Olga Kivelä, Nina Atanasova, Pamela Österlund, Teemu Smura, Antti Sukura, Tomas Strandin, Lara Dutra, Olli Vapalahti, Heli Nordgren, Ravi Kant and Tarja Sironen
Publié dans: Emerging Infectious Diseases, Numéro 28/6, 2022, ISSN 1080-6040
Éditeur: US National Center for Infectious Diseases
DOI: 10.3201/eid2806.220328

Intranasal inhibitor broadly blocks SARS-CoV-2 including recent highly immunoevasive Omicron subvariants

Auteurs: Anna R. Mäkelä, Hasan Uğurlu, Liina Hannula, Ravi Kant, Petja Salminen, Riku Fagerlund, Sanna Mäki, Anu Haveri, Tomas Strandin, Lauri Kareinen, Jussi Hepojoki, Suvi Kuivanen, Lev Levanov, Arja Pasternack, Rauno A. Naves, Olli Ritvos, Pamela Österlund, Tarja Sironen, Olli Vapalahti, Anja Kipar, Juha T. Huiskonen, Ilona Rissanen and Kalle Saksela
Publié dans: BioRxiv, 2022, ISSN 2692-8205
Éditeur: Cold Spring Harbor Laboratory Press
DOI: 10.1101/2021.12.28.474326

Iceland as Stepping Stone for Spread of Highly Pathogenic Avian Influenza Virus between Europe and North America

Auteurs: Anne Günther, Oliver Krone, Vilhjalmur Svansson, Anne Pohlmann, Jacqueline King, Gunnar Thor Hallgrimsson, Kristinn Haukur Skarphéðinsson, Heiða Sigurðardóttir, Stefán Ragnar Jónsson, Martin Beer, Brigitte Brugger, Timm Harder
Publié dans: Emerging Infectious Diseases, Numéro 28/12, 2022, ISSN 1080-6040
Éditeur: US National Center for Infectious Diseases
DOI: 10.3201/eid2812.221086

West Nile Virus spread in Europe - phylogeographic pattern analysis and key drivers

Auteurs: Lu Lu, Feifei Zhang, Bas B. Oude Munnink, Emmanuelle Munger, Reina S. Sikkema, Styliani Pappa, Katerina Tsioka, Alessandro Sinigaglia, Emanuela Dal Molin, Barbara B. Shih, Anne Günther, Anne Pohlmann, Martin Beer, Rachel A. Taylor, Frederic Bartumeus, Mark Woolhouse, Frank M. Aarestrup, Luisa Barzon, Anna Papa and Samantha Lycett
Publié dans: BioRxiv, 2022, ISSN 2692-8205
Éditeur: Cold Spring Harbor Laboratory Press
DOI: 10.1101/2022.11.10.515886

SARS-CoV-2 Neutralizing Human Antibodies Protect Against Lower Respiratory Tract Disease in a Hamster Model

Auteurs: Bart L Haagmans, Danny Noack, Nisreen M A Okba, Wentao Li, Chunyan Wang, Theo Bestebroer, Rory de Vries, Sander Herfst, Dennis de Meulder, Elwin Verveer, Peter van Run, Mart M Lamers, Bart Rijnders, Casper Rokx, Frank van Kuppeveld, Frank Grosveld, Dubravka Drabek, Corine Geurts van Kessel, Marion Koopmans, Berend Jan Bosch, Thijs Kuiken, Barry Rockx
Publié dans: The Journal of Infectious Diseases, Numéro 223/12, 2021, Page(s) 2020-2028, ISSN 0022-1899
Éditeur: University of Chicago Press
DOI: 10.1093/infdis/jiab289

Spa diversity and genetic characterization of t127 methicillin-resistant Staphylococcus aureus in a tertiary Greek hospital

Auteurs: Katerina Tsergouli, Theodoros Karampatakis, Konstantina Kontopoulou, Styliani Pappa, Parthena Kampouridou, Georgia Kallasidou, Katerina Tsioka, Sophia Zotou, Εleftheria-Eugenia Farmaki, Charalampos Kotzamanidis and Anna Papa
Publié dans: Acta Microbiologica et immunologica Hungarica, Numéro 69/3, 2022, ISSN 1217-8950
Éditeur: Akademiai Kiado
DOI: 10.1556/030.2022.01825

Risks of SARS-CoV-2 transmission between free-ranging animals and captive mink in the Netherlands

Auteurs: Reina S. Sikkema, Lineke Begeman, René Janssen, Wendy J. Wolters, Corine Geurtsvankessel, Erwin de Bruin, Renate W. Hakze-van der Honing, Phaedra Eblé, Wim H.M. van der Poel, Judith M.A. van den Brand, Roy Slaterus, Maurice La Haye, Marion P.G. Koopmans, Francisca Velkers and Thijs Kuiken
Publié dans: Transboundary and Emerging Diseases, 2022, ISSN 1865-1674
Éditeur: Blackwell-Wiss.-Verl
DOI: 10.1111/tbed.14686

Rapid spread of a new West Nile virus lineage 1 associated with increased risk of neuroinvasive disease during a large outbreak in northern Italy, 2022: One Health analysis.

Auteurs: Barzon L, Pacenti M, Montarsi F, Fornasiero D, Gobbo F, Quaranta E, Monne I, Fusaro A, Volpe A, Sinigaglia A, Riccetti S, Molin ED, Satto S, Lisi V, Gobbi F, Galante S, Feltrin G, Valeriano V, Favero L, Russo F, Mazzucato M, Bortolami A, Mulatti P, Terregino C, Capelli G.
Publié dans: Journal of Travel Medicine, 2022, ISSN 1195-1982
Éditeur: B.C. Decker Inc.
DOI: 10.1093/jtm/taac125

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