CORDIS - Risultati della ricerca dell’UE
CORDIS

Versatile Emerging infectious disease Observatory

Pubblicazioni

SARS-CoV-2 and Type 1 Diabetes in Finnish Children

Autori: Knip M, Parviainen A, Turtinen M, But A, Härkönen T, Hepojoki J, Sironen T, Iheozor-Ejiofor R, Uğurlu H, Saksela K, Lempainen J, Ilonen J, Vapalahti O, Register FPD
Pubblicato in: Social Science Research Network, 2022, ISSN 1556-5068
Editore: Elsevier
DOI: 10.2139/ssrn.4237744

SARS-CoV-2 infections among healthcare workers at Helsinki University Hospital, Finland, spring 2020: Serosurvey, symptoms and risk factors

Autori: Anu Kantele, Tinja Lääveri, Lauri Kareinen, Sari H. Pakkanen, Karin Blomgren, Sointu Mero, Anu Patjas, Jenni Virtanen, Ruut Uusitalo, Maija Lappalainen, Asko Järvinen, Satu Kurkela, Anne J. Jääskeläinen, Olli Vapalahti, Tarja Sironen
Pubblicato in: Travel Medicine and Infectious Disease, Numero 39, 2021, ISSN 1477-8939
Editore: Elsevier BV
DOI: 10.1016/j.tmaid.2020.101949

Canine Saliva as a Possible Source of Antimicrobial Resistance Genes

Autori: Adrienn Gréta Tóth, Imre Tóth, Bernadett Rózsa, Attila Dubecz, Árpád V. Patai, Tibor Németh, Selçuk Kaplan, Eszter Gabriella Kovács, László Makrai, Norbert Solymosi
Pubblicato in: Antibiotics, Numero 11/11, 2022, ISSN 2078-2489
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/antibiotics11111490

Impact of antigenic evolution and original antigenic sin on SARS-CoV-2 immunity

Autori: Muriel Aguilar-Bretones, Ron Am Fouchier, Marion Pg Koopmans, Gijsbert P van Nierop
Pubblicato in: The Journal of Clinical Investigation, Numero 133/1, 2023, ISSN 0021-9738
Editore: American Society for Clinical Investigation
DOI: 10.1172/jci162192

Rise and fall of SARS-CoV-2 variants in Rotterdam: Comparison of wastewater and clinical surveillance

Autori: Ray W Izquierdo-Lara, Leo Heijnen, Bas B Oude Munnink, Claudia M E Schapendonk, Goffe Elsinga, Jeroen Langeveld, Johan Post, Divyae K Prasad, Christian Carrizosa, Frederic Been, Janko van Beek, Remy Schilperoort, Rianne Vriend, Ewout Fanoy, Evelien I T de Schepper, Reina S Sikkema, Richard Molenkamp, Frank M Aarestrup, Gertjan Medema, Marion P G Koopmans and Miranda de Graaf
Pubblicato in: Science of the Total Environment, Numero 873, 2023, ISSN 0048-9697
Editore: Elsevier BV
DOI: 10.1016/j.scitotenv.2023.162209

Case Report: The Carotid Body in COVID-19: Histopathological and Virological Analyses of an Autopsy Case Series

Autori: Andrea Porzionato, Aron Emmi, Martina Contran, Elena Stocco, Silvia Riccetti, Alessandro Sinigaglia, Veronica Macchi, Luisa Barzon and Raffaele De Caro
Pubblicato in: Frontiers in Immunology, Numero 12, 2021, ISSN 1664-3224
Editore: Frontiers Media SA
DOI: 10.3389/fimmu.2021.736529

Has Epizootic Become Enzootic? Evidence for a Fundamental Change in the Infection Dynamics of Highly Pathogenic Avian Influenza in Europe, 2021

Autori: Anne Pohlmann, Jacqueline King, Alice Fusaro, Bianca Zecchin, Ashley C Banyard, Ian H Brown, Alexander M P Byrne, Nancy Beerens, Yuan Liang, Rene Heutink, Frank Harders, Joe James, Scott M Reid, Rowena D E Hansen, Nicola S Lewis, Charlotte Hjulsager, Lars E Larsen, Siamak Zohari, Kristofer Anderson, Caroline Bröjer, Alexander Nagy, Vladimir Savič, Steven van Borm, Mieke Steensels, Francois-Xavie
Pubblicato in: mBio, Numero 13/4, 2022, ISSN 2161-2129
Editore: American Society for Microbiology
DOI: 10.1128/mbio.00609-22

One Day in Denmark: Nationwide point-prevalence survey of human bacterial isolates and comparison of classical and whole-genome sequence-based species identification methods

Autori: Ana Rita Rebelo,Tobias Ibfelt, Valeria Bortolaia, Pimlapas Leekitcharoenphon, Dennis Schrøder Hansen, Hans Linde Nielsen, Svend Ellermann-Eriksen, Michael Kemp, Bent Løwe Røder, Niels Frimodt-Møller, Turid Snekloth Søndergaard, John Eugenio Coia, Claus Østergaard, Michael Pedersen, Henrik Westh and Frank Møller Aarestrup
Pubblicato in: PLOS ONE, 2022, ISSN 1932-6203
Editore: Public Library of Science
DOI: 10.1371/journal.pone.0261999

HAVoC, a bioinformatic pipeline for reference-based consensus assembly and lineage assignment for SARS-CoV-2 sequences

Autori: Phuoc Thien Truong Nguyen, Ilya Plyusnin, Tarja Sironen, Olli Vapalahti, Ravi Kant, Teemu Smura
Pubblicato in: BMC Bioinformatics, Numero 22/1, 2021, ISSN 1471-2105
Editore: BioMed Central
DOI: 10.1186/s12859-021-04294-2

SARS-CoV-2 Infection and Disease Modelling Using Stem Cell Technology and Organoids

Autori: Marta Trevisan, Silvia Riccetti, Alessandro Sinigaglia, Luisa Barzon
Pubblicato in: International Journal of Molecular Sciences, Numero 22/5, 2021, Pagina/e 2356, ISSN 1422-0067
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms22052356

Hypopharyngeal Ulcers in COVID-19: Histopathological and Virological Analyses – A Case Report

Autori: Andrea Porzionato, Elena Stocco1, Aron Emmi, Martina Contran, Veronica Macchi, Silvia Riccetti, Alessandro Sinigaglia, Luisa Barzon and Raffaele De Caro
Pubblicato in: Frontiers in Immunology, Numero 12, 2021, ISSN 1664-3224
Editore: Frontiers Media SA
DOI: 10.3389/fimmu.2021.676828

Sindbis virus neutralising antibodies detected in Swedish horses

Autori: Agnes Björnström, Anne-Lie Blomström, Manish Chandra Singh, Jenny C Hesson
Pubblicato in: One Health, Numero 12, 2021, ISSN 2352-7714
Editore: Elsevier BV
DOI: 10.1016/j.onehlt.2021.100242

An advanced sequence clustering and designation workflow reveals the enzootic maintenance of a dominant West Nile virus subclade in Germany

Autori: Pauline Dianne Santos, Anne Günther, Markus Keller, Timo Homeier-Bachmann, Martin H. Groschup, Martin Beer, Dirk Höper and Ute Ziegler
Pubblicato in: BioRxiv, 2022, ISSN 2692-8205
Editore: Cold Spring Harbor Laboratory Press
DOI: 10.1101/2022.10.05.509209

Monitoring SARS-CoV-2 Circulation and Diversity through Community Wastewater Sequencing, the Netherlands and Belgium

Autori: Ray Izquierdo-Lara, Goffe Elsinga, Leo Heijnen, Bas B. Oude Munnink, Claudia M.E. Schapendonk, David Nieuwenhuijse, Matthijs Kon, Lu Lu, Frank M. Aarestrup, Samantha Lycett, Gertjan Medema, Marion P.G. Koopmans, Miranda de Graaf
Pubblicato in: Emerging Infectious Diseases, Numero 27/5, 2021, Pagina/e 1405-1415, ISSN 1080-6040
Editore: US National Center for Infectious Diseases
DOI: 10.3201/eid2705.204410

Prevalence, Infectious Characteristics and Genetic Diversity of Staphylococcus aureus and Methicillin-Resistant Staphylococcus aureus (MRSA) in Two Raw-Meat Processing Establishments in Northern Greece

Autori: Dimitrios Komodromos, Charalampos Kotzamanidis, Virginia Giantzi, Styliani Pappa, Anna Papa, Antonios Zdragas, Apostolos Angelidis, Daniel Sergelidis
Pubblicato in: Pathogens, Numero 11/11, 2022, ISSN 2076-0817
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pathogens11111370

Integrating Global Citizen Science Platforms to Enable Next-Generation Surveillance of Invasive and Vector Mosquitoes

Autori: Ryan M. Carney, Connor Mapes, Russanne D. Low, Alex Long, Anne Bowser, David Durieux, Karlene Rivera, Berj Dekramanjian, Frederic Bartumeus, Daniel Guerrero, Carrie E. Seltzer, Farhat Azam, Sriram Chellappan and John R. B. Palmer
Pubblicato in: Insects, Numero 13/8, 2022, ISSN 2075-4450
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/insects13080675

Normalisation of SARS-CoV-2 concentrations in wastewater: The use of flow, electrical conductivity and crAssphage

Autori: Jeroen Langeveld, Remy Schilperoort, Leo Heijnen, Goffe Elsinga, Claudia E.M. Schapendonk, Ewout Fanoy, Evelien I.T. de Schepper, Marion P.G. Koopmans, Miranda de Graaf and Gertjan Medema
Pubblicato in: Science of the Total Environment, Numero 865, 2022, ISSN 0048-9697
Editore: Elsevier BV
DOI: 10.1016/j.scitotenv.2022.161196

Timeliness of online COVID-19 reports from official sources

Autori: Laura Espinosa, Olesia Altunina, and Marcel Salathé
Pubblicato in: Frontiers in Public Health, Numero 10, 2023, ISSN 2296-2565
Editore: Future Biologics
DOI: 10.3389/fpubh.2022.1027812

Social Media Use, Self-Efficacy, Perceived Threat, and Preventive Behavior in Times of COVID-19: Results of a Cross-Sectional Study in Pakistan

Autori: Qaisar Khalid Mahmood, Sara Rizvi Jafree, Sahifa Mukhtar and Florian Fischer
Pubblicato in: Frontiers in Pschology, Numero 12, 2021, ISSN 1664-1078
Editore: Frontiers Research Foundation
DOI: 10.3389/fpsyg.2021.562042

Kinetics of Neutralizing Antibodies of COVID-19 Patients Tested Using Clinical D614G, B.1.1.7, and B 1.351 Isolates in Microneutralization Assays

Autori: Jenni Virtanen, Ruut Uusitalo, Essi M. Korhonen, Kirsi Aaltonen, Teemu Smura, Suvi Kuivanen, Sari H. Pakkanen, Sointu Mero, Anu Patjas, Marianna Riekkinen, Anu Kantele, Visa Nurmi, Klaus Hedman, Jussi Hepojoki,Tarja Sironen, Eili Huhtamo and Olli Vapalahti
Pubblicato in: Viruses, Numero 13/6, 2021, ISSN 1999-4915
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v13060996

ClusTRace, a bioinformatic pipeline for analyzing clusters in virus phylogenies

Autori: Ilya Plyusnin1, Phuoc Thien Truong Nguyen, Tarja Sironen, Olli Vapalahti, Teemu Smura and Ravi Kant
Pubblicato in: BMC Bioinformatics, Numero 23/196, 2022, ISSN 1471-2105
Editore: BioMed Central
DOI: 10.1186/s12859-022-04709-8

Nanobody engineering for SARS-CoV-2 neutralization and detection

Autori: Liina Hannula, Suvi Kuivanen, Jonathan Lasham, Ravi Kant, Lauri Kareinen, Mariia Bogacheva, Tomas Strandin, Tarja Sironen, Vivek Sharma, Petri Saviranta, Anja Kipar, Olli Vapalahti, Juha T. Huiskonen, Ilona Rissanen
Pubblicato in: BioRxiv, 2022, ISSN 2692-8205
Editore: Cold Spring Harbor Laboratory Press
DOI: 10.1101/2022.09.14.507920

Experimental Infection and Genetic Characterization of Two Different Capripox Virus Isolates in Small Ruminants

Autori: Janika Wolff, Jacqueline King, Tom Moritz, Anne Pohlmann, Donata Hoffmann, Martin Beer, Bernd Hoffmann
Pubblicato in: Viruses, Numero 12/10, 2020, Pagina/e 1098, ISSN 1999-4915
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v12101098

Experimental SARS-CoV-2 Infection of Bank Voles

Autori: Lorenz Ulrich, Anna Michelitsch, Nico Halwe, Kerstin Wernike, Donata Hoffmann, Martin Beer
Pubblicato in: Emerging Infectious Diseases, Numero 27/4, 2021, Pagina/e 1193-1195, ISSN 1080-6040
Editore: US National Center for Infectious Diseases
DOI: 10.3201/eid2704.204945

Phylogenetic Investigation of Norovirus Transmission between Humans and Animals

Autori: Nele Villabruna, Ray W. Izquierdo Lara, Judit Szarvas, Marion P. G. Koopmans, Miranda de Graaf
Pubblicato in: Viruses, Numero 12/11, 2020, Pagina/e 1287, ISSN 1999-4915
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v12111287

COVID-19 in health-care workers in three hospitals in the south of the Netherlands: a cross-sectional study

Autori: Reina S Sikkema, Suzan D Pas, David F Nieuwenhuijse, Áine O'Toole, Jaco Verweij, Anne van der Linden, Irina Chestakova, Claudia Schapendonk, Mark Pronk, Pascal Lexmond, Theo Bestebroer, Ronald J Overmars, Stefan van Nieuwkoop, Wouter van den Bijllaardt, Robbert G Bentvelsen, Miranda M L van Rijen, Anton G M Buiting, Anne J G van Oudheusden, Bram M Diederen, Anneke M C Bergmans, Annemiek van der E
Pubblicato in: The Lancet Infectious Diseases, Numero 20/11, 2020, Pagina/e 1273-1280, ISSN 1473-3099
Editore: The Lancet Publishing Group
DOI: 10.1016/s1473-3099(20)30527-2

Diagnostic Potential of a Luminex-Based Coronavirus Disease 2019 Suspension Immunoassay (COVID-19 SIA) for the Detection of Antibodies against SARS-CoV-2

Autori: Tove Hoffman, Linda Kolstad, Johanna F. Lindahl, Bo Albinsson, Anders Bergqvist, Bengt Rönnberg and Åke Lundkvist
Pubblicato in: Viruses, Numero 13/993, 2021, ISSN 1999-4915
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v13060993

The genetics of highly pathogenic avian influenza viruses of subtype H5 in Germany, 2006–2020

Autori: Jacqueline King, Timm Harder, Franz J. Conraths, Martin Beer, Anne Pohlmann
Pubblicato in: Transboundary and Emerging Diseases, Numero 68/3, 2021, Pagina/e 1136-1150, ISSN 1865-1674
Editore: Blackwell-Wiss.-Verl
DOI: 10.1111/tbed.13843

Human Virus Genomes Are Enriched in Conserved Adenine/Thymine/Uracil Multiple Tracts That Pause Polymerase Progression

Autori: Emanuela Ruggiero, Enrico Lavezzo, Marco Grazioli, Irene Zanin, Maja Marušič, Janez Plavec, Sara N. Richter and Stefano Toppo
Pubblicato in: Frontiers in Microbiology, Numero 13, 2022, ISSN 1664-302X
Editore: Frontiers Media
DOI: 10.3389/fmicb.2022.915069

Human West Nile Virus Lineage 2 Infection: Epidemiological, Clinical, and Virological Findings

Autori: Monia Pacenti, Alessandro Sinigaglia, Elisa Franchin, Silvana Pagni, Enrico Lavezzo, Fabrizio Montarsi, Gioia Capelli, Luisa Barzon
Pubblicato in: Viruses, Numero 12/4, 2020, Pagina/e 458, ISSN 1999-4915
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v12040458

Suppression of a SARS-CoV-2 outbreak in the Italian municipality of Vo’

Autori: Enrico Lavezzo, Elisa Franchin, Constanze Ciavarella, Gina Cuomo-Dannenburg, Luisa Barzon, Claudia Del Vecchio, Lucia Rossi, Riccardo Manganelli, Arianna Loregian, Nicolò Navarin, Davide Abate, Manuela Sciro, Stefano Merigliano, Ettore De Canale, Maria Cristina Vanuzzo, Valeria Besutti, Francesca Saluzzo, Francesco Onelia, Monia Pacenti, Saverio G. Parisi, Giovanni Carretta, Daniele Donato, Lucia
Pubblicato in: Nature, Numero 584/7821, 2020, Pagina/e 425-429, ISSN 0028-0836
Editore: Nature Publishing Group
DOI: 10.1038/s41586-020-2488-1

Filling the gaps in the global prevalence map of clinical antimicrobial resistance

Autori: Rik Oldenkamp, Constance Schultsz, Emiliano Mancini, Antonio Cappuccio
Pubblicato in: Proceedings of the National Academy of Sciences, Numero 118/1, 2020, Pagina/e e2013515118, ISSN 0027-8424
Editore: National Academy of Sciences
DOI: 10.1073/pnas.2013515118

Next-generation diagnostics: virus capture facilitates a sensitive viral diagnosis for epizootic and zoonotic pathogens including SARS-CoV-2

Autori: Claudia Wylezich, Sten Calvelage, Kore Schlottau, Ute Ziegler, Anne Pohlmann, Dirk Höper, Martin Beer
Pubblicato in: Microbiome, Numero 9/1, 2021, ISSN 2049-2618
Editore: BMC
DOI: 10.1186/s40168-020-00973-z

Targeting the NS2B-NS3 protease of tick-borne encephalitis virus withpan-flaviviral protease inhibitors

Autori: Dario Akaberi, Amanda Båhlström, Praveen K. Chinthakindi, Tomas Nyman, Anja Sandström, Josef D. Järhult, Navaneethan Palanisamy, Åke Lundkvist and Johan Lennerstrand
Pubblicato in: Antiviral Research, Numero 190, 2021, ISSN 0166-3542
Editore: Elsevier BV
DOI: 10.1016/j.antiviral.2021.105074

SARS-CoV-2 spike D614G change enhances replication and transmission

Autori: Bin Zhou, Tran Thi Nhu Thao, Donata Hoffmann, Adriano Taddeo, Nadine Ebert, Fabien Labroussaa, Anne Pohlmann, Jacqueline King, Silvio Steiner, Jenna N. Kelly, Jasmine Portmann, Nico Joel Halwe, Lorenz Ulrich, Bettina Salome Trüeb, Xiaoyu Fan, Bernd Hoffmann, Li Wang, Lisa Thomann, Xudong Lin, Hanspeter Stalder, Berta Pozzi, Simone de Brot, Nannan Jiang, Dan Cui, Jaber Hossain, Malania M. Wilson,
Pubblicato in: Nature, Numero 592/7852, 2021, Pagina/e 122-127, ISSN 0028-0836
Editore: Nature Publishing Group
DOI: 10.1038/s41586-021-03361-1

Co‐infections: Simultaneous detections of West Nile virus and Usutu virus in birds from Germany

Autori: Pauline Dianne Santos, Friederike Michel, Claudia Wylezich, Dirk Höper, Markus Keller, Cora M. Holicki, Claudia A. Szentiks, Martin Eiden, Aemero Muluneh, Antonie Neubauer‐Juric, Sabine Thalheim, Anja Globig, Martin Beer, Martin H. Groschup, Ute Ziegler
Pubblicato in: Transboundary and Emerging Diseases, 2021, ISSN 1865-1674
Editore: Blackwell-Wiss.-Verl
DOI: 10.1111/tbed.14050

Neutralising reactivity against SARS-CoV-2 Delta and Omicron variants by vaccination and infection history

Autori: Enrico Lavezzo, Monia Pacenti, Laura Manuto, Caterina Boldrin, Margherita Cattai, Marco Grazioli, Federico Bianca, Margherita Sartori, Federico Caldart, Gioele Castelli, Michele Nicoletti, Eleonora Nieddu, Elisa Salvadoretti, Beatrice Labella, Ludovico Fava, Maria Cristina Vanuzzo, Vittoria Lisi, Maria Antonello, Carmela Ileana Grimaldi, Chiara Zulian, Claudia Del Vecchio, Mario Plebani, Andrea Pa
Pubblicato in: Genome Medicine, Numero 14/61, 2022, ISSN 1756-994X
Editore: BioMed Central
DOI: 10.1186/s13073-022-01066-2

Highly pathogenic avian influenza virus incursions of subtype H5N8, H5N5, H5N1, H5N4, and H5N3 in Germany during 2020-21

Autori: Jacqueline King, Timm Harder, Anja Globig, Lina Stacker, Anne Günther, Christian Grund, Martin Beer, Anne Pohlmann
Pubblicato in: Virus Evolution, Numero 8/1, 2022, ISSN 2057-1577
Editore: Oxford University Press
DOI: 10.1093/ve/veac035

The next phase of SARS-CoV-2 surveillance: real-time molecular epidemiology

Autori: Bas B Oude Munnink, Nathalie Worp, David F Nieuwenhuijse, Reina S Sikkema, Bart Haagmans, Ron A M Fouchier, Marion Koopmans
Pubblicato in: Nature Medicine, Numero 27/9, 2021, ISSN 1078-8956
Editore: Nature Publishing Group
DOI: 10.1038/s41591-021-01472-w

Deep learning identification for citizen science surveillance of tiger mosquitoes

Autori: Balint Armin Pataki, Joan Garriga, Roger Eritja, John R. B. Palmer, Frederic Bartumeus, Istvan Csabai
Pubblicato in: Scientific Reports, Numero 11/1, 2021, ISSN 2045-2322
Editore: Nature Publishing Group
DOI: 10.1038/s41598-021-83657-4

West Nile fever upsurge in a Greek regional unit, 2020

Autori: Anna Papa, Katerina Tsioka, Sandra Gewehr, Stella Kalaitzopouou, Danai Pervanidou, Anna Vakali, Chrysovalantou Kefaloudi, Styliani Pappa, Xanthoula Louka, Spiros Mourelatos
Pubblicato in: Acta Tropica, Numero 221, 2021, Pagina/e 106010, ISSN 0001-706X
Editore: Elsevier BV
DOI: 10.1016/j.actatropica.2021.106010

Transatlantic spread of highly pathogenic avian influenza H5N1 by wild birds from Europe to North America in 2021

Autori: V. Caliendo; N. S. Lewis; A. Pohlmann; S.R. Baillie; A.C. Banyard; M. Beer; I.H. Brown; R.A.M. Fouchier; R.D.E. Hansen; T.K. Lameris; A.S. Lang; S. Laurendeau; O. Lung; G. Robertson; H. van der Jeugd; T.N. Alkie; K. Thorup; M.L. van Toor; J. Waldenström; C. Yason; T. Kuiken; Y. Berhane
Pubblicato in: Scientific Reports, Numero 45, 2022, ISSN 2045-2322
Editore: Nature Publishing Group
DOI: 10.1101/2022.01.13.476155

A 10-Minute “Mix and Read” Antibody Assay for SARS-CoV-2

Autori: Juuso Rusanen, Lauri Kareinen, Lev Levanov, Sointu Mero, Sari H. Pakkanen, Anu Kantele, Fatima Amanat, Florian Krammer, Klaus Hedman, Olli Vapalahti and Jussi Hepojoki
Pubblicato in: Viruses, Numero 13/2, 2021, ISSN 1999-4915
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v13020143

Introduction and Rapid Spread of SARS-CoV-2 Omicron Variant and Dynamics of BA.1 and BA.1.1 Sublineages, Finland, December 2021

Autori: Hanna Vauhkonen, Phuoc Truong Nguyen, Ravi Kant, Ilja Plyusnin, Mert Erdin, Satu Kurkela, Hanna Liimatainen, Niina Ikonen, Soile Blomqvist, Kirsi Liitsola, Erika Lindh, Otto Helve, Hanna Jarva, Raisa Loginov, Aino Palva, Tiina Hannunen, Sari Hannula, Mikko Parry, Paula Kauppi, Antti Vaheri, Tarja Sironen, Maija Lappalainen, Carita Savolainen-Kopra, Teemu Smura, Olli Vapalahti
Pubblicato in: Emerging Infectious Diseases, Numero 28/6, 2022, ISSN 1080-6040
Editore: US National Center for Infectious Diseases
DOI: 10.3201/eid2806.220515

Common Laboratory Mice Are Susceptible to Infection with the SARS-CoV-2 Beta Variant

Autori: Ravi Kant, Lauri Kareinen, Teemu Smura, Tobias L. Freitag, Sawan Kumar Jha, Kari Alitalo, Seppo Meri, Tarja Sironen, Kalle Saksela, Tomas Strandin, Anja Kipar and Olli Vapalahti
Pubblicato in: Viruses, Numero 13/11, 2021, ISSN 1999-4915
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v13112263

Evaluation of Production Lots of a Rapid Point-of-Care Lateral Flow Serological Test Intended for Identification of IgM and IgG against the N-Terminal Part of the Spike Protein (S1) of SARS-CoV-2

Autori: Tove Hoffman, Linda Kolstad, Bengt Rönnberg and Åke Lundkvist
Pubblicato in: Viruses, Numero 13/6, 2021, ISSN 1999-4915
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v13061043

Rapid SARS-CoV-2 whole-genome sequencing and analysis for informed public health decision-making in the Netherlands

Autori: Bas B. Oude Munnink, David F. Nieuwenhuijse, Mart Stein, Áine O’Toole, Manon Haverkate, Madelief Mollers, Sandra K. Kamga, Claudia Schapendonk, Mark Pronk, Pascal Lexmond, Anne van der Linden, Theo Bestebroer, Irina Chestakova, Ronald J. Overmars, Stefan van Nieuwkoop, Richard Molenkamp, Annemiek A. van der Eijk, Corine GeurtsvanKessel, Harry Vennema, Adam Meijer, Andrew Rambaut, Jaap van Disse
Pubblicato in: Nature Medicine, Numero 26/9, 2020, Pagina/e 1405-1410, ISSN 1078-8956
Editore: Nature Publishing Group
DOI: 10.1038/s41591-020-0997-y

Temporal Dynamics of Influenza A(H5N1) Subtype before and after the Emergence of H5N8.

Autori: Amer F, Li R, Rabie N, El-Husseiny MH, Yehia N, Hagag NM, Samy M, Selim A, Hassan MK, Hassan WMM, Arafa AS, Lundkvist Å, Shahein MA, Naguib MM.
Pubblicato in: Viruses, Numero 13/8, 2021, ISSN 1999-4915
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v13081565

Multi‐species ELISA for the detection of antibodies against SARS‐CoV‐2 in animals

Autori: Kerstin Wernike, Andrea Aebischer, Anna Michelitsch, Donata Hoffmann, Conrad Freuling, Anne Balkema‐Buschmann, Annika Graaf, Thomas Müller, Nikolaus Osterrieder, Melanie Rissmann, Dennis Rubbenstroth, Jacob Schön, Claudia Schulz, Jakob Trimpert, Lorenz Ulrich, Asisa Volz, Thomas Mettenleiter, Martin Beer
Pubblicato in: Transboundary and Emerging Diseases, Numero 68/4, 2021, Pagina/e 1779-1785, ISSN 1865-1674
Editore: Blackwell-Wiss.-Verl
DOI: 10.1111/tbed.13926

Genetic data in the fight against pandemics

Autori: Ágnes Becsei, Orsolya Anna Pipek, Péter Pollner, István Csabai
Pubblicato in: AK Journals, Numero 2/1, 2021, Pagina/e 12-16, ISSN 2732-2688
Editore: Scientia et Securitas
DOI: 10.1556/112.2021.00006

One Day in Denmark: Comparison of Phenotypic and Genotypic Antimicrobial Susceptibility Testing in Bacterial Isolates From Clinical Settings

Autori: Ana Rita Rebelo, Valeria Bortolaia, Pimlapas Leekitcharoenphon, Dennis Schrøder Hansen, Hans Linde Nielsen, Svend Ellermann-Eriksen, Michael Kemp, Bent Løwe Røder, Niels Frimodt-Møller, Turid Snekloth Søndergaard, John Eugenio Coia, Claus Østergaard, Henrik Westh and Frank M. Aarestrup
Pubblicato in: Frontiers in Microbiology, Numero 13, 2022, ISSN 1664-302X
Editore: Frontiers Media
DOI: 10.3389/fmicb.2022.804627

CRHP Finder, a webtool for the detection of clarithromycin resistance in Helicobacter pylori from whole‐genome sequencing data

Autori: Melodi Yusibova, Henrik Hasman, Philip Thomas Lanken Conradsen Clausen, Frank Imkamp, Karoline Wagner, Leif Percival Andersen
Pubblicato in: Helicobacter, Numero 25/6, 2020, ISSN 1083-4389
Editore: Blackwell Publishing Inc.
DOI: 10.1111/hel.12752

Clusters of science and health related Twitter users become more isolated during the COVID-19 pandemic

Autori: Francesco Durazzi, Martin Müller, Marcel Salathé & Daniel Remondini
Pubblicato in: Scientific Reports volume, Numero 11/19655, 2021, ISSN 2045-2322
Editore: Nature Publishing Group
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Wolbachia prevalence in the vector species Culex pipiens and Culex torrentium in a Sindbis virus-endemic region of Sweden

Autori: Alexander Bergman; Jenny C. Hesson
Pubblicato in: Parasites & Vectors, 2021, ISSN 1756-3305
Editore: BioMed Central
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Sindbis Virus Infection in Non-Blood-Fed Hibernating Culex pipiens Mosquitoes in Sweden

Autori: Alexander Bergman, Emma Dahl, Åke Lundkvist and Jenny C. Hesson
Pubblicato in: Viruses, Numero 12/12, 2020, ISSN 1999-4915
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
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Rapid multiplex MinION nanopore sequencing workflow for Influenza A viruses

Autori: Jacqueline King, Timm Harder, Martin Beer, Anne Pohlmann
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Editore: BioMed Central
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Novel NGS pipeline for virus discovery from a wide spectrum of hosts and sample types

Autori: Ilya Plyusnin, Ravi Kant, Anne J Jääskeläinen, Tarja Sironen, Liisa Holm, Olli Vapalahti, Teemu Smura
Pubblicato in: Virus Evolution, Numero 6/2, 2020, ISSN 2057-1577
Editore: Oxford Academic
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Modeling the impact of surveillance activities combined with physical distancing interventions on COVID-19 epidemics at a local level

Autori: Guan-Jhou Chen, John R B Palmer, Frederic Bartumeus and Ana Alba-Casals
Pubblicato in: Infectious Disease Modelling, Numero 7, 2022, ISSN 2468-0427
Editore: Elsevier
DOI: 10.1016/j.idm.2022.11.001

Circulating microRNA signatures associated with disease severity and outcome in COVID-19 patients

Autori: Alessandra Giannella, Silvia Riccetti, Alessandro Sinigaglia, Chiara Piubelli, Elisa Razzaboni, Piero Di Battista, Matteo Agostini, Emanuela Dal Molin, Riccardo Manganelli, Federico Gobbi, Giulio Ceolotto, Luisa Barzon
Pubblicato in: Frontiers in Immunology, 2022, ISSN 1664-3224
Editore: Frontiers Media SA
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ResFinder – an open online resource for identification of antimicrobial resistance genes in next-generation sequencing data and prediction of phenotypes from genotypes

Autori: Alfred Ferrer Florensa, Rolf Sommer Kaas, Philip Thomas Lanken Conradsen Clausen, Derya Aytan-Aktug and Frank M. Aarestrup
Pubblicato in: Microbial Genomics, Numero 8/1, 2022, ISSN 2057-5858
Editore: The Microbiology Society
DOI: 10.1099/mgen.0.000748

Image-based & machine learning-guided multiplexed serology test for SARS-CoV-2

Autori: Vilja Pietiäinen, Minttu Polso, Ede Migh, Christian Guckelsberger, Maria Harmati, Akos Diosdi, Laura Turunen, Antti Hassinen, Swapnil Potdar, Annika Koponen, Edina Gyukity Sebestyen, Ferenc Kovacs, Andras Kriston, Reka Hollandi, Katalin Burian, Gabriella Terhes, Adam Visnyovszki, Eszter Fodor, Zsombor Lacza, Anu Kantele, Pekka Kolehmainen, Laura Kakkola, Tomas Strandin, Lev Levanov, Olli Kallion
Pubblicato in: medRxiv, 2022, ISSN 1756-1833
Editore: Cold Spring Harbor Laboratory
DOI: 10.1101/2022.09.08.22279729

Incidence Trends for SARS-CoV-2 Alpha and Beta Variants, Finland, Spring 2021

Autori: Ravi Kant, Phuoc Truong Nguyen, Soile Blomqvist, Mert Erdin, Hussein Alburkat, Maija Suvanto, Fathiah Zakham, Veera Salminen, Viktor Olander, Minna Paloniemi, Leena Huhti, Sara Lehtinen, Bruno Luukinen, Hanna Jarva, Hannimari Kallio-Kokko, Satu Kurkela, Maija Lappalainen, Hanna Liimatainen, Sari Hannula, Jani Halkilahti, Jonna Ikonen, Niina Ikonen, Otto Helve, Marianne Gunell, Tytti Vuorinen, Ilya
Pubblicato in: Emerging Infectious Diseases, Numero 27/12, 2021, ISSN 1080-6040
Editore: US National Center for Infectious Diseases
DOI: 10.3201/eid2712.211631

Mis-tweeting communication: a Vaccine Hesitancy analysis among twitter users in Italy

Autori: Davide Gori, Francesco Durazzi, Marco Montalti, Zeno Di Valerio, Chiara Reno, Maria Pia Fantini, Daniel Remondini
Pubblicato in: Acta Biomedica, Numero 92/6, 2021, ISSN 0392-4203
Editore: Mattioli 1885 SpA
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SARS-CoV-2 in hospital indoor environments is predominantly non-infectious

Autori: Janina Krambrich, Dario Akaberi, Jiaxin Ling, Tove Hofman, Lennart Svensson, Marie Hagbom and Åke Lundkvist
Pubblicato in: Virology Journal, Numero 18/109, 2021, ISSN 1743-422x
Editore: BioMed Central
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Emergence of ST39 carbapenem-resistant Klebsiella pneumoniae producing VIM-1 and KPC-2

Autori: Theodoros Karampatakis, Charalampos Zarras, Styliani Pappa, Eleni Vagdatli, Elias Iosifidis, Emmanuel Roilides, Anna Papa
Pubblicato in: Microbial Pathofenesis, Numero 162, 2022, ISSN 0882-4010
Editore: Elsevier BV
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Predicting Spatial Patterns of Sindbis Virus (SINV) Infection Risk in Finland Using Vector, Host and Environmental Data

Autori: Ruut Uusitalo, Mika Siljander, C. Lorna Culverwell, Guy Hendrickx, Andreas Lindén, Timothée Dub, Juha Aalto, Jussi Sane, Cedric Marsboom, Maija T. Suvanto, Andrea Vajda, Hilppa Gregow, Essi M. Korhonen, Eili Huhtamo, Petri Pellikka, Olli Vapalahti
Pubblicato in: International Journal of Environmental Research and Public Health, Numero 18/13, 2021, Pagina/e 7064, ISSN 1660-4601
Editore: IJERPH
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Transmission of SARS-CoV-2 on mink farms between humans and mink and back to humans

Autori: Bas B. Oude Munnink, Reina S. Sikkema, David F. Nieuwenhuijse, Robert Jan Molenaar, Emmanuelle Munger, Richard Molenkamp, Arco van der Spek, Paulien Tolsma, Ariene Rietveld, Miranda Brouwer, Noortje Bouwmeester-Vincken, Frank Harders, Renate Hakze-van der Honing, Marjolein C. A. Wegdam-Blans, Ruth J. Bouwstra, Corine GeurtsvanKessel, Annemiek A. van der Eijk, Francisca C. Velkers, Lidwien A. M. Sm
Pubblicato in: Science, Numero 371/6525, 2021, Pagina/e 172-177, ISSN 0036-8075
Editore: American Association for the Advancement of Science
DOI: 10.1126/science.abe5901

A curated data resource of 214K metagenomes for characterization of the global antimicrobial resistome

Autori: Hannah-Marie Martiny, Patrick Munk,Christian Brinch, Frank M. Aarestrup and Thomas N. Petersen
Pubblicato in: PLOS Biology, 2022, ISSN 1544-9173
Editore: Public Library of Science
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Mosquito alert: leveraging citizen science to create a GBIF mosquito occurrence dataset

Autori: Živko Južnič-Zonta, Isis Sanpera-Calbet, Roger Eritja, John R.B. Palmer, Agustí Escobar, Joan Garriga, Aitana Oltra, Alex Richter-Boix, Francis Schaffner, Alessandra della Torre, Miguel Ángel Miranda, Marion Koopmans, Luisa Barzon, Frederic Bartumeus Ferre
Pubblicato in: GigaByte, Numero 1/13, 2022, ISSN 2709-4715
Editore: GigaScience Press
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Differential plasmacytoid dendritic cell phenotype and type I Interferon response in asymptomatic and severe COVID-19 infection

Autori: Martina Severa, Roberta A. Diotti, Marilena P. Etna, Fabiana Rizzo, Stefano Fiore, Daniela Ricci, Marco Iannetta, Alessandro Sinigaglia, Alessandra Lodi, Nicasio Mancini, Elena Criscuolo, Massimo Clementi, Massimo Andreoni, Stefano Balducci, Luisa Barzon, Paola Stefanelli, Nicola Clementi, Eliana M. Coccia
Pubblicato in: PLOS Pathogens, Numero 17/9, 2021, ISSN 1553-7366
Editore: Public Library of Science
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Modelling West Nile Virus and Usutu Virus Pathogenicity in Human Neural Stem Cells

Autori: Silvia Riccetti, Alessandro Sinigaglia, Giovanna Desole, Norbert Nowotny, Marta Trevisan, Luisa Barzon
Pubblicato in: Viruses, Numero 12/8, 2020, Pagina/e 882, ISSN 1999-4915
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v12080882

Adaptation, spread and transmission of SARS-CoV-2 in farmed minks and associated humans in the Netherlands

Autori: Lu Lu, Reina S Sikkema, Francisca C Velkers, David F Nieuwenhuijse, Egil A J Fischer, Paola A Meijer, Noortje Bouwmeester-Vincken, Ariene Rietveld, Marjolijn C A Wegdam-Blans, Paulien Tolsma, Marco Koppelman, Lidwien A M Smit, Renate W Hakze-van der Honing , Wim H M van der Poel, Arco N van der Spek, Marcel A H Spierenburg, Robert Jan Molenaar, Jan de Rond, Marieke Augustijn, Mark Woolhouse, J Arj
Pubblicato in: Nature Communications, Numero 12/1, 2021, ISSN 2041-1723
Editore: Nature Publishing Group
DOI: 10.1038/s41467-021-27096-9

Connect to Protect: Dynamics and Genetic Connections of Highly Pathogenic Avian Influenza Outbreaks in Poultry from 2016 to 2021 in Germany

Autori: King, Jacqueline, Christoph Staubach, Christiane Lüder, Susanne Koethe, Anne Günther, Lina Stacker, Dennis Rubbenstroth, Klaas Dietze, Christian Grund, Franz J. Conraths, Timm Harder, Martin Beer, and Anne Pohlmann
Pubblicato in: Viruses, Numero 14, 2022, ISSN 1999-4915
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v14091849

Detection of antimicrobial resistance genes in urban air

Autori: Ágnes Becsei, Norbert Solymosi, István Csabai, Donát Magyar
Pubblicato in: Microbiology Open, 2021, ISSN 2045-8827
Editore: John Wiley and Sons Inc.
DOI: 10.1002/mbo3.1248

Rapid SARS-CoV-2 Intra-Host and Within-Household Emergence of Novel Haplotypes

Autori: Manuto, Laura, Marco Grazioli, Andrea Spitaleri, Paolo Fontana, Luca Bianco, Luigi Bertolotti, Martina Bado, Giorgia Mazzotti, Federico Bianca, Francesco Onelia, Giovanni Lorenzin, Fabio Simeoni, Dejan Lazarevic, Elisa Franchin, Claudia Del Vecchio, Ilaria Dorigatti, Giovanni Tonon, Daniela Maria Cirillo, Enrico Lavezzo, Andrea Crisanti, and Stefano Toppo
Pubblicato in: Viruses, Numero 14/2, 2022, ISSN 1999-4915
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v14020399

Early initiation of the respiratory syncytial virus season in 2021-2022, Greece

Autori: Styliani Pappa, Katerina Haidopoulou, Charalampos Zarras, Eleni Theodorakou, Eleni Papadimitriou, Elias Iosifidis, Ioanna Gkeka, Konstantina Stoikou, Eleni Vagdatli, Lemonia Skoura and Anna Papa
Pubblicato in: Journal of Medical Virology, 2022, ISSN 0146-6615
Editore: John Wiley & Sons Inc.
DOI: 10.1002/jmv.27671

A glimpse of antimicrobial resistance gene diversity in kefir and yoghurt

Autori: Adrienn Gréta Tóth, István Csabai, Gergely Maróti, Ákos Jerzsele, Attila Dubecz, Árpád V. Patai, Maura Fiona Judge, Sára Ágnes Nagy, László Makrai, Krisztián Bányai, Géza Szita, Norbert Solymosi
Pubblicato in: Scientific Reports, Numero 10/1, 2020, ISSN 2045-2322
Editore: Nature Publishing Group
DOI: 10.1038/s41598-020-80444-5

Autochthonous dengue outbreak in Italy 2020: Clinical, virological and entomological findings

Autori: Luisa Barzon, Federico Gobbi, Gioia Capelli, Fabrizio Montarsi, Simone Martini, Silvia Riccetti, Alessandro Sinigaglia, Monia Pacenti, Giacomina Pavan, Mario Rassu, Maria Teresa Padovan, Vinicio Manfrin, Francesca Zanella, Francesca Russo, Felice Foglia, Luca Lazzarini
Pubblicato in: Journal of Travel Medicine, 2021, ISSN 1195-1982
Editore: B.C. Decker Inc.
DOI: 10.1093/jtm/taab130

Neuropilin-1 facilitates SARS-CoV-2 cell entry and infectivity

Autori: Ludovico Cantuti-Castelvetri, Ravi Ojha, Liliana D. Pedro, Minou Djannatian, Jonas Franz, Suvi Kuivanen, Franziska van der Meer, Katri Kallio, Tuğberk Kaya, Maria Anastasina, Teemu Smura, Lev Levanov, Leonora Szirovicza, Allan Tobi, Hannimari Kallio-Kokko, Pamela Österlund, Merja Joensuu, Frédéric A. Meunier, Sarah J. Butcher, Martin Sebastian Winkler, Brit Mollenhauer, Ari Helenius, Ozgun Gok
Pubblicato in: Science, Numero 370/6518, 2020, Pagina/e 856-860, ISSN 0036-8075
Editore: American Association for the Advancement of Science
DOI: 10.1126/science.abd2985

Droplet digital RT-PCR to detect SARS-CoV-2 signature mutations of variants of concern in wastewater

Autori: Leo Heijnen, Goffe Elsinga, Miranda de Graaf, Richard Molenkamp, Marion P G Koopmans and Gertjan Medema
Pubblicato in: The Science of the Total Environment, Numero 799, 2021, ISSN 0048-9697
Editore: Elsevier BV
DOI: 10.1016/j.scitotenv.2021.149456

Susceptibility of Raccoon Dogs for Experimental SARS-CoV-2 Infection

Autori: Conrad M. Freuling, Angele Breithaupt, Thomas Müller, Julia Sehl, Anne Balkema-Buschmann, Melanie Rissmann, Antonia Klein, Claudia Wylezich, Dirk Höper, Kerstin Wernike, Andrea Aebischer, Donata Hoffmann, Virginia Friedrichs, Anca Dorhoi, Martin H. Groschup, Martin Beer, Thomas C. Mettenleiter
Pubblicato in: Emerging Infectious Diseases, Numero 26/12, 2020, Pagina/e 2982-2985, ISSN 1080-6040
Editore: US National Center for Infectious Diseases
DOI: 10.3201/eid2612.203733

Highly Divergent SARS-CoV-2 Alpha Variant in Chronically Infected Immunocompromised Person

Autori: Bas B Oude Munnink, Roel H T Nijhuis, Nathalie Worp, Marjan Boter, Babette Weller, Babs E Verstrepen, Corine GeurtsvanKessel, Maarten F Corsten, Anne Russcher and Marion Koopmans
Pubblicato in: Emerging Infectious Diseases, Numero 28/9, 2022, ISSN 1080-6040
Editore: US National Center for Infectious Diseases
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Global Distribution of mcr Gene Variants in 214K Metagenomic Samples

Autori: Hannah-Marie Martiny, Patrick Munk, Christian Brinch, Judit Szarvas, Frank M Aarestrup, Thomas Nordahl Petersen
Pubblicato in: mSystems, Numero 7/2, 2022, ISSN 2379-5077
Editore: American Society for Microbiology
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Early start of seasonal transmission and co-circulation of West Nile virus lineage 2 and a newly introduced lineage 1 strain in northern Italy, June 2022

Autori: Barzon L, Montarsi F, Quaranta E, Monne I, Pacenti M, Michelutti A, Toniolo F, Danesi P, Marchetti G, Gobbo F, Sinigaglia A, Riccetti S, Dal Molin E, Favero L, Russo F, Capelli G.
Pubblicato in: Eurosurveillance, Numero 27/29/21, 2022, ISSN 1560-7917
Editore: ECDC
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The phylodynamics of SARS-CoV-2 during 2020 in Finland

Autori: Phuoc Truong Nguyen, Ravi Kant, Frederik Van den Broeck, Maija T. Suvanto, Hussein Alburkat, Jenni Virtanen, Ella Ahvenainen, Robert Castren, Samuel L. Hong, Guy Baele, Maarit J. Ahava, Hanna Jarva, Suvi Tuulia Jokiranta, Hannimari Kallio-Kokko, Eliisa Kekäläinen, Vesa Kirjavainen, Elisa Kortela, Satu Kurkela, Maija Lappalainen, Hanna Liimatainen, Marc A. Suchard, Sari Hannula, Pekka Ellonen, Ta
Pubblicato in: Communications Medicine, Numero 2/65, 2022, ISSN 2730-664X
Editore: Nature Portfolio publishing
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West Nile Virus in Culex Mosquitoes in Central Macedonia, Greece, 2022

Autori: Katerina Tsioka, Sandra Gewehr, Styliani Pappa, Stella Kalaitzopoulou, Konstantina Stoikou, Spiros Mourelatos and Anna Papa
Pubblicato in: Viruses, Numero 15/1, 2023, ISSN 1999-4915
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v15010224

Synergistic Block of SARS-CoV-2 Infection by Combined Drug Inhibition of the Host Entry Factors PIKfyve Kinase and TMPRSS2 Protease

Autori: Alex J B Kreutzberger, Anwesha Sanyal, Ravi Ojha, Jesse D Pyle, Olli Vapalahti, Giuseppe Balistreri, Tom Kirchhausen
Pubblicato in: Journal of Virology, Numero 95/21, 2021, ISSN 0022-538X
Editore: American Society for Microbiology
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Scaling neighbor joining to one million taxa with dynamic and heuristic neighbor joining

Autori: Philip T L C Clausen
Pubblicato in: Bioinformatics, Numero 39/1, 2023, ISSN 1367-4803
Editore: Oxford University Press
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At the tip of an iceberg: citizen science and active surveillance collaborating to broaden the known distribution of Aedes japonicus in Spain

Autori: Roger Eritja, Sarah Delacour-Estrella, Ignacio Ruiz-Arrondo, Mikel A. González, Carlos Barceló, Ana L. García-Pérez, Javier Lucientes, Miguel Á. Miranda, Frederic Bartumeus
Pubblicato in: Parasites & Vectors, Numero 14/1, 2021, ISSN 1756-3305
Editore: BioMed Central
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The central role of Italy in the spatial spread of USUTU virus in Europe

Autori: B Zecchin, A Fusaro, A Milani, A Schivo, S Ravagnan, S Ormelli, C Mavian, A Michelutti, F Toniolo, L Barzon, I Monne, G Capelli
Pubblicato in: Virus Evolution, Numero 7/1, 2021, ISSN 2057-1577
Editore: Oxford University Press
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Infections with highly pathogenic avian influenza A virus (HPAIV) H5N8 in harbor seals at the German North Sea coast, 2021

Autori: Alexander Postel, Jacqueline King, Franziska K Kaiser, Johanna Kennedy, Mara Sophie Lombardo, Wencke Reineking, Madeleine de le Roi, Timm Harder, Anne Pohlmann, Thomas Gerlach, Guus Rimmelzwaan, Simon Rohner, Lotte C Striewe, Stephanie Gross, Luca A Schick, Jana C Klink, Katharina Kramer, Albert D M E Osterhaus, Martin Beer, Wolfgang Baumgärtner, Ursula Siebert and Paul Becher
Pubblicato in: Emerging Microbes & Infections, Numero 11/1, 2022, ISSN 2222-1751
Editore: Nature Publishing Group
DOI: 10.1080/22221751.2022.2043726

Automated download and clean-up of family-specific databases for kmer-based virus identification

Autori: Rosa L Allesøe, Camilla K Lemvigh, My V T Phan, Philip T L C Clausen, Alfred F Florensa, Marion P G Koopmans, Ole Lund, Matthew Cotten
Pubblicato in: Bioinformatics, Numero 37/5, 2020, Pagina/e 705-710, ISSN 1367-4803
Editore: Oxford University Press
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Antimicrobial resistance determinants in silage

Autori: Sára Ágnes Nagy, Adrienn Gréta Tóth, Márton Papp, Selçuk Kaplan & Norbert Solymosi
Pubblicato in: Scientific Reports, Numero 12/5243, 2022, ISSN 2045-2322
Editore: Nature Publishing Group
DOI: 10.1038/s41598-022-09296-5

Comparative pathogenesis of COVID-19, MERS, and SARS in a nonhuman primate model

Autori: Barry Rockx, Thijs Kuiken, Sander Herfst, Theo Bestebroer, Mart M. Lamers, Bas B. Oude Munnink, Dennis de Meulder, Geert van Amerongen, Judith van den Brand, Nisreen M. A. Okba, Debby Schipper, Peter van Run, Lonneke Leijten, Reina Sikkema, Ernst Verschoor, Babs Verstrepen, Willy Bogers, Jan Langermans, Christian Drosten, Martje Fentener van Vlissingen, Ron Fouchier, Rik de Swart, Marion Koopmans,
Pubblicato in: Science, Numero 368/6494, 2020, Pagina/e 1012-1015, ISSN 0036-8075
Editore: American Association for the Advancement of Science
DOI: 10.1126/science.abb7314

History and classification of Aigai virus (formerly Crimean-Congo haemorrhagic fever virus genotype VI)

Autori: Anna Papa, Marco Marklewitz, Sofia Paraskevopoulou, Aura R. Garrison, Sergey V. Alkhovsky, Tatjana Avšič-Županc, Dennis A. Bente, Éric Bergeron, Felicity Burt, Nicholas Di Paola, Koray Ergünay, Roger Hewson, Ali Mirazimi, Amadou Alpha Sall, Jessica R. Spengler, Thomas S. Postler, Gustavo Palacios, and Jens H. Kuhn
Pubblicato in: The Journal of General Virology, Numero 103/4, 2022, ISSN 1465-2099
Editore: Microbiology Society
DOI: 10.1099/jgv.0.001734

Identification of mutations in SARS-CoV-2 PCR primer regions

Autori: Anikó Mentes, Krisztián Papp, Dávid Visontai, József Stéger, VEO Technical Working Group, István Csabai, Anna Medgyes-Horváth and Orsolya Anna Pipek
Pubblicato in: Scientific Reports, Numero 12, 2022, ISSN 2045-2322
Editore: Nature Publishing Group
DOI: 10.1038/s41598-022-21953-3

COVID-19 Neuropathology: evidence for SARS-CoV-2 invasion of Human Brainstem Nuclei

Autori: Aron Emmi, Stefania Rizzo, Luisa Barzon, Michele Sandre, Elisa Carturan, Alessandro Sinigaglia, Silvia Riccetti, Mila della Barbera, Rafael Boscolo-Berto, Patrizia Cocco, Veronica Macchi, Angelo Antonini, Monica De Gaspari, Cristina Basso, Raffaele De Caro, Andrea Porzionato
Pubblicato in: BioRxiv, 2022, ISSN 2692-8205
Editore: Cold Spring Habor Laboratory Press
DOI: 10.1101/2022.06.29.498117

Antibodies against SARS-CoV-2 Suggestive of Single Events of Spillover to Cattle, Germany

Autori: Kerstin Wernike, Jens Böttcher, Silke Amelung, Kerstin Albrecht, Tanja Gärtner, Karsten Donat, and Martin Beer
Pubblicato in: Emerging Infectious Diseases, Numero 28/9, 2022, ISSN 1080-6040
Editore: US National Center for Infectious Diseases
DOI: 10.3201/eid2809.220125

Natural diversity of the honey bee (Apis mellifera) gut bacteriome in various climatic and seasonal states

Autori: Márton Papp, László Békési, Róbert Farkas, László Makrai, Maura Fiona Judge, Gergely Maróti, Dóra Tőzsér, Norbert Solymosi
Pubblicato in: PLOS ONE, Numero 17/9, 2022, ISSN 1932-6203
Editore: Public Library of Science
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Genomic monitoring of SARS-CoV-2 uncovers an Nsp1 deletion variant that modulates type I interferon response

Autori: Jing-wen Lin, Chao Tang, Han-cheng Wei, Baowen Du, Chuan Chen, Minjin Wang, Yongzhao Zhou, Ming-xia Yu, Lu Cheng, Suvi Kuivanen, Natacha S. Ogando, Lev Levanov, Yuancun Zhao, Chang-ling Li, Ran Zhou, Zhidan Li, Yiming Zhang, Ke Sun, Chengdi Wang, Li Chen, Xia Xiao, Xiuran Zheng, Sha-sha Chen, Zhen Zhou, Ruirui Yang, Dan Zhang, Mengying Xu, Junwei Song, Danrui Wang, Yupeng Li, ShiKun Lei, Wanqin Ze
Pubblicato in: Cell Host & Microbe, Numero 29/3, 2021, Pagina/e 489-502.e8, ISSN 1931-3128
Editore: Cell Press
DOI: 10.1016/j.chom.2021.01.015

Are We Ready for the Arrival of the New COVID-19 Vaccinations? Great Promises and Unknown Challenges Still to Come

Autori: Davide Gori, Chiara Reno, Daniel Remondini, Francesco Durazzi and Maria Pia Fantini
Pubblicato in: Vaccines, Numero 9(2), 2021, ISSN 2078-2489
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/vaccines9020173

Sindbis virus outbreak and evidence for geographical expansion in Finland, 2021

Autori: Maija T Suvanto, Ruut Uusitalo, Eveline Otte im Kampe, Tytti Vuorinen, Satu Kurkela, Olli Vapalahti, Timothée Dub, Eili Huhtamo and Essi M Korhonen
Pubblicato in: Euro Surveillance, Numero 27/31, 2022, ISSN 1025-496X
Editore: Centre Europeen pour la Surveillance Epidemiologique du SIDA
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Mobile Antimicrobial Resistance Genes in Probiotics

Autori: Adrienn Gréta Tóth, István Csabai, Maura Fiona Judge, Gergely Maróti, Ágnes Becsei, Sándor Spisák, and Norbert Solymosi
Pubblicato in: Antibiotics, Numero 10/11, 2021, ISSN 2078-2489
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/antibiotics10111287

Occurrence of Antibodies against SARS-CoV-2 in the Domestic Cat Population of Germany

Autori: Anna Michelitsch, Donata Hoffmann, Kerstin Wernike, Martin Beer
Pubblicato in: Vaccines, Numero 8/4, 2020, Pagina/e 772, ISSN 2076-393X
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/vaccines8040772

Association between guilds of birds in the African-Western Palaearctic region and the tick species Hyalomma rufipes, one of the main vectors of Crimean-Congo hemorrhagic fever virus

Autori: Tove Hoffman, Laura G. Carra, Patrik Öhagen, Thord Fransson, Christos Barboutis, Dario Piacentini, Jordi Figuerola, Yosef Kiat, Alejandro Onrubia, Thomas G.T. Jaenson, Kenneth Nilsson, Åke Lundkvist, and Björn Olsen
Pubblicato in: One Health, 2021, ISSN 2352-7714
Editore: Elsevier
DOI: 10.1016/j.onehlt.2021.100349

Novel HPAIV H5N8 Reassortant (Clade 2.3.4.4b) Detected in Germany

Autori: Jacqueline King, Christoph Schulze, Andreas Engelhardt, Andreas Hlinak, Sara-Lisa Lennermann, Kerstin Rigbers, Jasmin Skuballa, Christoph Staubach, Thomas C. Mettenleiter, Timm Harder, Martin Beer, Anne Pohlmann
Pubblicato in: Viruses, Numero 12/3, 2020, Pagina/e 281, ISSN 1999-4915
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v12030281

Seasonal coronavirus-specific B cells with limited SARS-CoV-2 cross-reactivity dominate the IgG response in severe COVID-19.

Autori: Muriel Aguilar-Bretones; Brenda M. Westerhuis; Matthijs P. Raadsen; Erwin de Bruin; Felicity D. Chandler; Nisreen M.A. Okba; Bart L. Haagmans; Thomas Langerak; Henrik Endeman; Johannes P. C. van den Akker; Diederik Gommers; Eric C. M. van Gorp; Corine H. GeurtsvanKessel; Rory D. de Vries; Ron A. M. Fouchier; Barry Rockx; Marion Koopmans; Gijsbert P. van Nierop
Pubblicato in: Journal of Clinical Investigation, Numero 51, 2021, ISSN 1558-8238
Editore: American Society for Clinical Investigation
DOI: 10.1172/jci150613

Antigenic cartography of SARS-CoV-2 reveals that Omicron BA.1 and BA.2 are antigenically distinct.

Autori: Mykytyn, Anna Z; Rissmann, Melanie; Kok, Adinda; Rosu, Miruna E; Schipper, Debby; Breugem, Tim I; van den Doel, Petra B; Chandler, Felicity; Bestebroer, Theo; de Wit, Maurice; van Royen, Martin E; Molenkamp, Richard; Oude Munnink, Bas B; de Vries, Rory D; GeurtsvanKessel, Corine; Smith, Derek J; Koopmans, Marion P G; Rockx, Barry; Lamers, Mart M; Fouchier, Ron A M; Haagmans, Bart L.
Pubblicato in: Science Immunology, Numero 7/75, 2022, ISSN 2470-9468
Editore: AAAS
DOI: 10.1126/sciimmunol.abq4450

Longitudinal analysis of T cell receptor repertoires reveals shared patterns of antigen-specific response to SARS-CoV-2 infection

Autori: Rachel M Gittelman, Enrico Lavezzo, Thomas M Snyder, H Jabran Zahid, Cara L Carty, Rebecca Elyanow, Sudeb Dalai, Ilan Kirsch, Lance Baldo, Laura Manuto, Elisa Franchin, Claudia Del Vecchio, Monia Pacenti, Caterina Boldrin, Margherita Cattai, Francesca Saluzzo, Andrea Padoan, Mario Plebani, Fabio Simeoni, Jessica Bordini, Nicola I Lorè, Dejan Lazarević, Daniela M Cirillo, Paolo Ghia, Stefano Topp
Pubblicato in: JCI Insight, 2022, ISSN 2077-0383
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.1172/jci.insight.151849

Evaluation of the use of alternative sample types for mosquito-borne flavivirus surveillance: Using Usutu virus as a model

Autori: Nnomzie C. Atama, Irina V. Chestakova, Erwin de Bruin, Tijs J. van den Berg, Emmanuelle Munger, Chantal Reusken, Bas B. Oude Munnink, Henk van der Jeugd, Judith M.A. van den Brand, Marion P.G. Koopmans and Reina S. Sikkema
Pubblicato in: One Health, Numero 15, 2022, ISSN 2352-7714
Editore: Elsevier
DOI: 10.1016/j.onehlt.2022.100456

MINTyper: an outbreak-detection method for accurate and rapid SNP typing of clonal clusters with noisy long reads

Autori: Malte B Hallgren, Søren Overballe-Petersen, Ole Lund, Henrik Hasman, Philip T L C Clausen
Pubblicato in: Biology Methods and Protocols, Numero 6/1, 2021, ISSN 2396-8923
Editore: Oxford Academic
DOI: 10.1093/biomethods/bpab008

Experimental Infection of Mink with SARS-COV-2 Omicron Variant and Subsequent Clinical Disease

Autori: Jenni Virtanen, Kirsi Aaltonen, Kristel Kegler, Vinaya Venkat, Thanakorn Niamsap, Lauri Kareinen, Rasmus Malmgren, Olga Kivelä, Nina Atanasova, Pamela Österlund, Teemu Smura, Antti Sukura, Tomas Strandin, Lara Dutra, Olli Vapalahti, Heli Nordgren, Ravi Kant and Tarja Sironen
Pubblicato in: Emerging Infectious Diseases, Numero 28/6, 2022, ISSN 1080-6040
Editore: US National Center for Infectious Diseases
DOI: 10.3201/eid2806.220328

Intranasal inhibitor broadly blocks SARS-CoV-2 including recent highly immunoevasive Omicron subvariants

Autori: Anna R. Mäkelä, Hasan Uğurlu, Liina Hannula, Ravi Kant, Petja Salminen, Riku Fagerlund, Sanna Mäki, Anu Haveri, Tomas Strandin, Lauri Kareinen, Jussi Hepojoki, Suvi Kuivanen, Lev Levanov, Arja Pasternack, Rauno A. Naves, Olli Ritvos, Pamela Österlund, Tarja Sironen, Olli Vapalahti, Anja Kipar, Juha T. Huiskonen, Ilona Rissanen and Kalle Saksela
Pubblicato in: BioRxiv, 2022, ISSN 2692-8205
Editore: Cold Spring Harbor Laboratory Press
DOI: 10.1101/2021.12.28.474326

Iceland as Stepping Stone for Spread of Highly Pathogenic Avian Influenza Virus between Europe and North America

Autori: Anne Günther, Oliver Krone, Vilhjalmur Svansson, Anne Pohlmann, Jacqueline King, Gunnar Thor Hallgrimsson, Kristinn Haukur Skarphéðinsson, Heiða Sigurðardóttir, Stefán Ragnar Jónsson, Martin Beer, Brigitte Brugger, Timm Harder
Pubblicato in: Emerging Infectious Diseases, Numero 28/12, 2022, ISSN 1080-6040
Editore: US National Center for Infectious Diseases
DOI: 10.3201/eid2812.221086

West Nile Virus spread in Europe - phylogeographic pattern analysis and key drivers

Autori: Lu Lu, Feifei Zhang, Bas B. Oude Munnink, Emmanuelle Munger, Reina S. Sikkema, Styliani Pappa, Katerina Tsioka, Alessandro Sinigaglia, Emanuela Dal Molin, Barbara B. Shih, Anne Günther, Anne Pohlmann, Martin Beer, Rachel A. Taylor, Frederic Bartumeus, Mark Woolhouse, Frank M. Aarestrup, Luisa Barzon, Anna Papa and Samantha Lycett
Pubblicato in: BioRxiv, 2022, ISSN 2692-8205
Editore: Cold Spring Harbor Laboratory Press
DOI: 10.1101/2022.11.10.515886

SARS-CoV-2 Neutralizing Human Antibodies Protect Against Lower Respiratory Tract Disease in a Hamster Model

Autori: Bart L Haagmans, Danny Noack, Nisreen M A Okba, Wentao Li, Chunyan Wang, Theo Bestebroer, Rory de Vries, Sander Herfst, Dennis de Meulder, Elwin Verveer, Peter van Run, Mart M Lamers, Bart Rijnders, Casper Rokx, Frank van Kuppeveld, Frank Grosveld, Dubravka Drabek, Corine Geurts van Kessel, Marion Koopmans, Berend Jan Bosch, Thijs Kuiken, Barry Rockx
Pubblicato in: The Journal of Infectious Diseases, Numero 223/12, 2021, Pagina/e 2020-2028, ISSN 0022-1899
Editore: University of Chicago Press
DOI: 10.1093/infdis/jiab289

Spa diversity and genetic characterization of t127 methicillin-resistant Staphylococcus aureus in a tertiary Greek hospital

Autori: Katerina Tsergouli, Theodoros Karampatakis, Konstantina Kontopoulou, Styliani Pappa, Parthena Kampouridou, Georgia Kallasidou, Katerina Tsioka, Sophia Zotou, Εleftheria-Eugenia Farmaki, Charalampos Kotzamanidis and Anna Papa
Pubblicato in: Acta Microbiologica et immunologica Hungarica, Numero 69/3, 2022, ISSN 1217-8950
Editore: Akademiai Kiado
DOI: 10.1556/030.2022.01825

Risks of SARS-CoV-2 transmission between free-ranging animals and captive mink in the Netherlands

Autori: Reina S. Sikkema, Lineke Begeman, René Janssen, Wendy J. Wolters, Corine Geurtsvankessel, Erwin de Bruin, Renate W. Hakze-van der Honing, Phaedra Eblé, Wim H.M. van der Poel, Judith M.A. van den Brand, Roy Slaterus, Maurice La Haye, Marion P.G. Koopmans, Francisca Velkers and Thijs Kuiken
Pubblicato in: Transboundary and Emerging Diseases, 2022, ISSN 1865-1674
Editore: Blackwell-Wiss.-Verl
DOI: 10.1111/tbed.14686

Rapid spread of a new West Nile virus lineage 1 associated with increased risk of neuroinvasive disease during a large outbreak in northern Italy, 2022: One Health analysis.

Autori: Barzon L, Pacenti M, Montarsi F, Fornasiero D, Gobbo F, Quaranta E, Monne I, Fusaro A, Volpe A, Sinigaglia A, Riccetti S, Molin ED, Satto S, Lisi V, Gobbi F, Galante S, Feltrin G, Valeriano V, Favero L, Russo F, Mazzucato M, Bortolami A, Mulatti P, Terregino C, Capelli G.
Pubblicato in: Journal of Travel Medicine, 2022, ISSN 1195-1982
Editore: B.C. Decker Inc.
DOI: 10.1093/jtm/taac125

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