Versatile Emerging infectious disease Observatory

Publikacje

SARS-CoV-2 and Type 1 Diabetes in Finnish Children

Autorzy: Knip M, Parviainen A, Turtinen M, But A, Härkönen T, Hepojoki J, Sironen T, Iheozor-Ejiofor R, Uğurlu H, Saksela K, Lempainen J, Ilonen J, Vapalahti O, Register FPD
Opublikowane w: Social Science Research Network, 2022, ISSN 1556-5068
Wydawca: Elsevier
DOI: 10.2139/ssrn.4237744

SARS-CoV-2 infections among healthcare workers at Helsinki University Hospital, Finland, spring 2020: Serosurvey, symptoms and risk factors

Autorzy: Anu Kantele, Tinja Lääveri, Lauri Kareinen, Sari H. Pakkanen, Karin Blomgren, Sointu Mero, Anu Patjas, Jenni Virtanen, Ruut Uusitalo, Maija Lappalainen, Asko Järvinen, Satu Kurkela, Anne J. Jääskeläinen, Olli Vapalahti, Tarja Sironen
Opublikowane w: Travel Medicine and Infectious Disease, Numer 39, 2021, ISSN 1477-8939
Wydawca: Elsevier BV
DOI: 10.1016/j.tmaid.2020.101949

Canine Saliva as a Possible Source of Antimicrobial Resistance Genes

Autorzy: Adrienn Gréta Tóth, Imre Tóth, Bernadett Rózsa, Attila Dubecz, Árpád V. Patai, Tibor Németh, Selçuk Kaplan, Eszter Gabriella Kovács, László Makrai, Norbert Solymosi
Opublikowane w: Antibiotics, Numer 11/11, 2022, ISSN 2078-2489
Wydawca: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/antibiotics11111490

Impact of antigenic evolution and original antigenic sin on SARS-CoV-2 immunity

Autorzy: Muriel Aguilar-Bretones, Ron Am Fouchier, Marion Pg Koopmans, Gijsbert P van Nierop
Opublikowane w: The Journal of Clinical Investigation, Numer 133/1, 2023, ISSN 0021-9738
Wydawca: American Society for Clinical Investigation
DOI: 10.1172/jci162192

Rise and fall of SARS-CoV-2 variants in Rotterdam: Comparison of wastewater and clinical surveillance

Autorzy: Ray W Izquierdo-Lara, Leo Heijnen, Bas B Oude Munnink, Claudia M E Schapendonk, Goffe Elsinga, Jeroen Langeveld, Johan Post, Divyae K Prasad, Christian Carrizosa, Frederic Been, Janko van Beek, Remy Schilperoort, Rianne Vriend, Ewout Fanoy, Evelien I T de Schepper, Reina S Sikkema, Richard Molenkamp, Frank M Aarestrup, Gertjan Medema, Marion P G Koopmans and Miranda de Graaf
Opublikowane w: Science of the Total Environment, Numer 873, 2023, ISSN 0048-9697
Wydawca: Elsevier BV
DOI: 10.1016/j.scitotenv.2023.162209

Case Report: The Carotid Body in COVID-19: Histopathological and Virological Analyses of an Autopsy Case Series

Autorzy: Andrea Porzionato, Aron Emmi, Martina Contran, Elena Stocco, Silvia Riccetti, Alessandro Sinigaglia, Veronica Macchi, Luisa Barzon and Raffaele De Caro
Opublikowane w: Frontiers in Immunology, Numer 12, 2021, ISSN 1664-3224
Wydawca: Frontiers Media SA
DOI: 10.3389/fimmu.2021.736529

Has Epizootic Become Enzootic? Evidence for a Fundamental Change in the Infection Dynamics of Highly Pathogenic Avian Influenza in Europe, 2021

Autorzy: Anne Pohlmann, Jacqueline King, Alice Fusaro, Bianca Zecchin, Ashley C Banyard, Ian H Brown, Alexander M P Byrne, Nancy Beerens, Yuan Liang, Rene Heutink, Frank Harders, Joe James, Scott M Reid, Rowena D E Hansen, Nicola S Lewis, Charlotte Hjulsager, Lars E Larsen, Siamak Zohari, Kristofer Anderson, Caroline Bröjer, Alexander Nagy, Vladimir Savič, Steven van Borm, Mieke Steensels, Francois-Xavie
Opublikowane w: mBio, Numer 13/4, 2022, ISSN 2161-2129
Wydawca: American Society for Microbiology
DOI: 10.1128/mbio.00609-22

One Day in Denmark: Nationwide point-prevalence survey of human bacterial isolates and comparison of classical and whole-genome sequence-based species identification methods

Autorzy: Ana Rita Rebelo,Tobias Ibfelt, Valeria Bortolaia, Pimlapas Leekitcharoenphon, Dennis Schrøder Hansen, Hans Linde Nielsen, Svend Ellermann-Eriksen, Michael Kemp, Bent Løwe Røder, Niels Frimodt-Møller, Turid Snekloth Søndergaard, John Eugenio Coia, Claus Østergaard, Michael Pedersen, Henrik Westh and Frank Møller Aarestrup
Opublikowane w: PLOS ONE, 2022, ISSN 1932-6203
Wydawca: Public Library of Science
DOI: 10.1371/journal.pone.0261999

HAVoC, a bioinformatic pipeline for reference-based consensus assembly and lineage assignment for SARS-CoV-2 sequences

Autorzy: Phuoc Thien Truong Nguyen, Ilya Plyusnin, Tarja Sironen, Olli Vapalahti, Ravi Kant, Teemu Smura
Opublikowane w: BMC Bioinformatics, Numer 22/1, 2021, ISSN 1471-2105
Wydawca: BioMed Central
DOI: 10.1186/s12859-021-04294-2

SARS-CoV-2 Infection and Disease Modelling Using Stem Cell Technology and Organoids

Autorzy: Marta Trevisan, Silvia Riccetti, Alessandro Sinigaglia, Luisa Barzon
Opublikowane w: International Journal of Molecular Sciences, Numer 22/5, 2021, Strona(/y) 2356, ISSN 1422-0067
Wydawca: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms22052356

Hypopharyngeal Ulcers in COVID-19: Histopathological and Virological Analyses – A Case Report

Autorzy: Andrea Porzionato, Elena Stocco1, Aron Emmi, Martina Contran, Veronica Macchi, Silvia Riccetti, Alessandro Sinigaglia, Luisa Barzon and Raffaele De Caro
Opublikowane w: Frontiers in Immunology, Numer 12, 2021, ISSN 1664-3224
Wydawca: Frontiers Media SA
DOI: 10.3389/fimmu.2021.676828

Sindbis virus neutralising antibodies detected in Swedish horses

Autorzy: Agnes Björnström, Anne-Lie Blomström, Manish Chandra Singh, Jenny C Hesson
Opublikowane w: One Health, Numer 12, 2021, ISSN 2352-7714
Wydawca: Elsevier BV
DOI: 10.1016/j.onehlt.2021.100242

An advanced sequence clustering and designation workflow reveals the enzootic maintenance of a dominant West Nile virus subclade in Germany

Autorzy: Pauline Dianne Santos, Anne Günther, Markus Keller, Timo Homeier-Bachmann, Martin H. Groschup, Martin Beer, Dirk Höper and Ute Ziegler
Opublikowane w: BioRxiv, 2022, ISSN 2692-8205
Wydawca: Cold Spring Harbor Laboratory Press
DOI: 10.1101/2022.10.05.509209

Monitoring SARS-CoV-2 Circulation and Diversity through Community Wastewater Sequencing, the Netherlands and Belgium

Autorzy: Ray Izquierdo-Lara, Goffe Elsinga, Leo Heijnen, Bas B. Oude Munnink, Claudia M.E. Schapendonk, David Nieuwenhuijse, Matthijs Kon, Lu Lu, Frank M. Aarestrup, Samantha Lycett, Gertjan Medema, Marion P.G. Koopmans, Miranda de Graaf
Opublikowane w: Emerging Infectious Diseases, Numer 27/5, 2021, Strona(/y) 1405-1415, ISSN 1080-6040
Wydawca: US National Center for Infectious Diseases
DOI: 10.3201/eid2705.204410

Prevalence, Infectious Characteristics and Genetic Diversity of Staphylococcus aureus and Methicillin-Resistant Staphylococcus aureus (MRSA) in Two Raw-Meat Processing Establishments in Northern Greece

Autorzy: Dimitrios Komodromos, Charalampos Kotzamanidis, Virginia Giantzi, Styliani Pappa, Anna Papa, Antonios Zdragas, Apostolos Angelidis, Daniel Sergelidis
Opublikowane w: Pathogens, Numer 11/11, 2022, ISSN 2076-0817
Wydawca: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pathogens11111370

Integrating Global Citizen Science Platforms to Enable Next-Generation Surveillance of Invasive and Vector Mosquitoes

Autorzy: Ryan M. Carney, Connor Mapes, Russanne D. Low, Alex Long, Anne Bowser, David Durieux, Karlene Rivera, Berj Dekramanjian, Frederic Bartumeus, Daniel Guerrero, Carrie E. Seltzer, Farhat Azam, Sriram Chellappan and John R. B. Palmer
Opublikowane w: Insects, Numer 13/8, 2022, ISSN 2075-4450
Wydawca: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/insects13080675

Normalisation of SARS-CoV-2 concentrations in wastewater: The use of flow, electrical conductivity and crAssphage

Autorzy: Jeroen Langeveld, Remy Schilperoort, Leo Heijnen, Goffe Elsinga, Claudia E.M. Schapendonk, Ewout Fanoy, Evelien I.T. de Schepper, Marion P.G. Koopmans, Miranda de Graaf and Gertjan Medema
Opublikowane w: Science of the Total Environment, Numer 865, 2022, ISSN 0048-9697
Wydawca: Elsevier BV
DOI: 10.1016/j.scitotenv.2022.161196

Timeliness of online COVID-19 reports from official sources

Autorzy: Laura Espinosa, Olesia Altunina, and Marcel Salathé
Opublikowane w: Frontiers in Public Health, Numer 10, 2023, ISSN 2296-2565
Wydawca: Future Biologics
DOI: 10.3389/fpubh.2022.1027812

Social Media Use, Self-Efficacy, Perceived Threat, and Preventive Behavior in Times of COVID-19: Results of a Cross-Sectional Study in Pakistan

Autorzy: Qaisar Khalid Mahmood, Sara Rizvi Jafree, Sahifa Mukhtar and Florian Fischer
Opublikowane w: Frontiers in Pschology, Numer 12, 2021, ISSN 1664-1078
Wydawca: Frontiers Research Foundation
DOI: 10.3389/fpsyg.2021.562042

Kinetics of Neutralizing Antibodies of COVID-19 Patients Tested Using Clinical D614G, B.1.1.7, and B 1.351 Isolates in Microneutralization Assays

Autorzy: Jenni Virtanen, Ruut Uusitalo, Essi M. Korhonen, Kirsi Aaltonen, Teemu Smura, Suvi Kuivanen, Sari H. Pakkanen, Sointu Mero, Anu Patjas, Marianna Riekkinen, Anu Kantele, Visa Nurmi, Klaus Hedman, Jussi Hepojoki,Tarja Sironen, Eili Huhtamo and Olli Vapalahti
Opublikowane w: Viruses, Numer 13/6, 2021, ISSN 1999-4915
Wydawca: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v13060996

ClusTRace, a bioinformatic pipeline for analyzing clusters in virus phylogenies

Autorzy: Ilya Plyusnin1, Phuoc Thien Truong Nguyen, Tarja Sironen, Olli Vapalahti, Teemu Smura and Ravi Kant
Opublikowane w: BMC Bioinformatics, Numer 23/196, 2022, ISSN 1471-2105
Wydawca: BioMed Central
DOI: 10.1186/s12859-022-04709-8

Nanobody engineering for SARS-CoV-2 neutralization and detection

Autorzy: Liina Hannula, Suvi Kuivanen, Jonathan Lasham, Ravi Kant, Lauri Kareinen, Mariia Bogacheva, Tomas Strandin, Tarja Sironen, Vivek Sharma, Petri Saviranta, Anja Kipar, Olli Vapalahti, Juha T. Huiskonen, Ilona Rissanen
Opublikowane w: BioRxiv, 2022, ISSN 2692-8205
Wydawca: Cold Spring Harbor Laboratory Press
DOI: 10.1101/2022.09.14.507920

Experimental Infection and Genetic Characterization of Two Different Capripox Virus Isolates in Small Ruminants

Autorzy: Janika Wolff, Jacqueline King, Tom Moritz, Anne Pohlmann, Donata Hoffmann, Martin Beer, Bernd Hoffmann
Opublikowane w: Viruses, Numer 12/10, 2020, Strona(/y) 1098, ISSN 1999-4915
Wydawca: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v12101098

Experimental SARS-CoV-2 Infection of Bank Voles

Autorzy: Lorenz Ulrich, Anna Michelitsch, Nico Halwe, Kerstin Wernike, Donata Hoffmann, Martin Beer
Opublikowane w: Emerging Infectious Diseases, Numer 27/4, 2021, Strona(/y) 1193-1195, ISSN 1080-6040
Wydawca: US National Center for Infectious Diseases
DOI: 10.3201/eid2704.204945

Phylogenetic Investigation of Norovirus Transmission between Humans and Animals

Autorzy: Nele Villabruna, Ray W. Izquierdo Lara, Judit Szarvas, Marion P. G. Koopmans, Miranda de Graaf
Opublikowane w: Viruses, Numer 12/11, 2020, Strona(/y) 1287, ISSN 1999-4915
Wydawca: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v12111287

COVID-19 in health-care workers in three hospitals in the south of the Netherlands: a cross-sectional study

Autorzy: Reina S Sikkema, Suzan D Pas, David F Nieuwenhuijse, Áine O'Toole, Jaco Verweij, Anne van der Linden, Irina Chestakova, Claudia Schapendonk, Mark Pronk, Pascal Lexmond, Theo Bestebroer, Ronald J Overmars, Stefan van Nieuwkoop, Wouter van den Bijllaardt, Robbert G Bentvelsen, Miranda M L van Rijen, Anton G M Buiting, Anne J G van Oudheusden, Bram M Diederen, Anneke M C Bergmans, Annemiek van der E
Opublikowane w: The Lancet Infectious Diseases, Numer 20/11, 2020, Strona(/y) 1273-1280, ISSN 1473-3099
Wydawca: The Lancet Publishing Group
DOI: 10.1016/s1473-3099(20)30527-2

Diagnostic Potential of a Luminex-Based Coronavirus Disease 2019 Suspension Immunoassay (COVID-19 SIA) for the Detection of Antibodies against SARS-CoV-2

Autorzy: Tove Hoffman, Linda Kolstad, Johanna F. Lindahl, Bo Albinsson, Anders Bergqvist, Bengt Rönnberg and Åke Lundkvist
Opublikowane w: Viruses, Numer 13/993, 2021, ISSN 1999-4915
Wydawca: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v13060993

The genetics of highly pathogenic avian influenza viruses of subtype H5 in Germany, 2006–2020

Autorzy: Jacqueline King, Timm Harder, Franz J. Conraths, Martin Beer, Anne Pohlmann
Opublikowane w: Transboundary and Emerging Diseases, Numer 68/3, 2021, Strona(/y) 1136-1150, ISSN 1865-1674
Wydawca: Blackwell-Wiss.-Verl
DOI: 10.1111/tbed.13843

Human Virus Genomes Are Enriched in Conserved Adenine/Thymine/Uracil Multiple Tracts That Pause Polymerase Progression

Autorzy: Emanuela Ruggiero, Enrico Lavezzo, Marco Grazioli, Irene Zanin, Maja Marušič, Janez Plavec, Sara N. Richter and Stefano Toppo
Opublikowane w: Frontiers in Microbiology, Numer 13, 2022, ISSN 1664-302X
Wydawca: Frontiers Media
DOI: 10.3389/fmicb.2022.915069

Human West Nile Virus Lineage 2 Infection: Epidemiological, Clinical, and Virological Findings

Autorzy: Monia Pacenti, Alessandro Sinigaglia, Elisa Franchin, Silvana Pagni, Enrico Lavezzo, Fabrizio Montarsi, Gioia Capelli, Luisa Barzon
Opublikowane w: Viruses, Numer 12/4, 2020, Strona(/y) 458, ISSN 1999-4915
Wydawca: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v12040458

Suppression of a SARS-CoV-2 outbreak in the Italian municipality of Vo’

Autorzy: Enrico Lavezzo, Elisa Franchin, Constanze Ciavarella, Gina Cuomo-Dannenburg, Luisa Barzon, Claudia Del Vecchio, Lucia Rossi, Riccardo Manganelli, Arianna Loregian, Nicolò Navarin, Davide Abate, Manuela Sciro, Stefano Merigliano, Ettore De Canale, Maria Cristina Vanuzzo, Valeria Besutti, Francesca Saluzzo, Francesco Onelia, Monia Pacenti, Saverio G. Parisi, Giovanni Carretta, Daniele Donato, Lucia
Opublikowane w: Nature, Numer 584/7821, 2020, Strona(/y) 425-429, ISSN 0028-0836
Wydawca: Nature Publishing Group
DOI: 10.1038/s41586-020-2488-1

Filling the gaps in the global prevalence map of clinical antimicrobial resistance

Autorzy: Rik Oldenkamp, Constance Schultsz, Emiliano Mancini, Antonio Cappuccio
Opublikowane w: Proceedings of the National Academy of Sciences, Numer 118/1, 2020, Strona(/y) e2013515118, ISSN 0027-8424
Wydawca: National Academy of Sciences
DOI: 10.1073/pnas.2013515118

Next-generation diagnostics: virus capture facilitates a sensitive viral diagnosis for epizootic and zoonotic pathogens including SARS-CoV-2

Autorzy: Claudia Wylezich, Sten Calvelage, Kore Schlottau, Ute Ziegler, Anne Pohlmann, Dirk Höper, Martin Beer
Opublikowane w: Microbiome, Numer 9/1, 2021, ISSN 2049-2618
Wydawca: BMC
DOI: 10.1186/s40168-020-00973-z

Targeting the NS2B-NS3 protease of tick-borne encephalitis virus withpan-flaviviral protease inhibitors

Autorzy: Dario Akaberi, Amanda Båhlström, Praveen K. Chinthakindi, Tomas Nyman, Anja Sandström, Josef D. Järhult, Navaneethan Palanisamy, Åke Lundkvist and Johan Lennerstrand
Opublikowane w: Antiviral Research, Numer 190, 2021, ISSN 0166-3542
Wydawca: Elsevier BV
DOI: 10.1016/j.antiviral.2021.105074

SARS-CoV-2 spike D614G change enhances replication and transmission

Autorzy: Bin Zhou, Tran Thi Nhu Thao, Donata Hoffmann, Adriano Taddeo, Nadine Ebert, Fabien Labroussaa, Anne Pohlmann, Jacqueline King, Silvio Steiner, Jenna N. Kelly, Jasmine Portmann, Nico Joel Halwe, Lorenz Ulrich, Bettina Salome Trüeb, Xiaoyu Fan, Bernd Hoffmann, Li Wang, Lisa Thomann, Xudong Lin, Hanspeter Stalder, Berta Pozzi, Simone de Brot, Nannan Jiang, Dan Cui, Jaber Hossain, Malania M. Wilson,
Opublikowane w: Nature, Numer 592/7852, 2021, Strona(/y) 122-127, ISSN 0028-0836
Wydawca: Nature Publishing Group
DOI: 10.1038/s41586-021-03361-1

Co‐infections: Simultaneous detections of West Nile virus and Usutu virus in birds from Germany

Autorzy: Pauline Dianne Santos, Friederike Michel, Claudia Wylezich, Dirk Höper, Markus Keller, Cora M. Holicki, Claudia A. Szentiks, Martin Eiden, Aemero Muluneh, Antonie Neubauer‐Juric, Sabine Thalheim, Anja Globig, Martin Beer, Martin H. Groschup, Ute Ziegler
Opublikowane w: Transboundary and Emerging Diseases, 2021, ISSN 1865-1674
Wydawca: Blackwell-Wiss.-Verl
DOI: 10.1111/tbed.14050

Neutralising reactivity against SARS-CoV-2 Delta and Omicron variants by vaccination and infection history

Autorzy: Enrico Lavezzo, Monia Pacenti, Laura Manuto, Caterina Boldrin, Margherita Cattai, Marco Grazioli, Federico Bianca, Margherita Sartori, Federico Caldart, Gioele Castelli, Michele Nicoletti, Eleonora Nieddu, Elisa Salvadoretti, Beatrice Labella, Ludovico Fava, Maria Cristina Vanuzzo, Vittoria Lisi, Maria Antonello, Carmela Ileana Grimaldi, Chiara Zulian, Claudia Del Vecchio, Mario Plebani, Andrea Pa
Opublikowane w: Genome Medicine, Numer 14/61, 2022, ISSN 1756-994X
Wydawca: BioMed Central
DOI: 10.1186/s13073-022-01066-2

Highly pathogenic avian influenza virus incursions of subtype H5N8, H5N5, H5N1, H5N4, and H5N3 in Germany during 2020-21

Autorzy: Jacqueline King, Timm Harder, Anja Globig, Lina Stacker, Anne Günther, Christian Grund, Martin Beer, Anne Pohlmann
Opublikowane w: Virus Evolution, Numer 8/1, 2022, ISSN 2057-1577
Wydawca: Oxford University Press
DOI: 10.1093/ve/veac035

The next phase of SARS-CoV-2 surveillance: real-time molecular epidemiology

Autorzy: Bas B Oude Munnink, Nathalie Worp, David F Nieuwenhuijse, Reina S Sikkema, Bart Haagmans, Ron A M Fouchier, Marion Koopmans
Opublikowane w: Nature Medicine, Numer 27/9, 2021, ISSN 1078-8956
Wydawca: Nature Publishing Group
DOI: 10.1038/s41591-021-01472-w

Deep learning identification for citizen science surveillance of tiger mosquitoes

Autorzy: Balint Armin Pataki, Joan Garriga, Roger Eritja, John R. B. Palmer, Frederic Bartumeus, Istvan Csabai
Opublikowane w: Scientific Reports, Numer 11/1, 2021, ISSN 2045-2322
Wydawca: Nature Publishing Group
DOI: 10.1038/s41598-021-83657-4

West Nile fever upsurge in a Greek regional unit, 2020

Autorzy: Anna Papa, Katerina Tsioka, Sandra Gewehr, Stella Kalaitzopouou, Danai Pervanidou, Anna Vakali, Chrysovalantou Kefaloudi, Styliani Pappa, Xanthoula Louka, Spiros Mourelatos
Opublikowane w: Acta Tropica, Numer 221, 2021, Strona(/y) 106010, ISSN 0001-706X
Wydawca: Elsevier BV
DOI: 10.1016/j.actatropica.2021.106010

Transatlantic spread of highly pathogenic avian influenza H5N1 by wild birds from Europe to North America in 2021

Autorzy: V. Caliendo; N. S. Lewis; A. Pohlmann; S.R. Baillie; A.C. Banyard; M. Beer; I.H. Brown; R.A.M. Fouchier; R.D.E. Hansen; T.K. Lameris; A.S. Lang; S. Laurendeau; O. Lung; G. Robertson; H. van der Jeugd; T.N. Alkie; K. Thorup; M.L. van Toor; J. Waldenström; C. Yason; T. Kuiken; Y. Berhane
Opublikowane w: Scientific Reports, Numer 45, 2022, ISSN 2045-2322
Wydawca: Nature Publishing Group
DOI: 10.1101/2022.01.13.476155

A 10-Minute “Mix and Read” Antibody Assay for SARS-CoV-2

Autorzy: Juuso Rusanen, Lauri Kareinen, Lev Levanov, Sointu Mero, Sari H. Pakkanen, Anu Kantele, Fatima Amanat, Florian Krammer, Klaus Hedman, Olli Vapalahti and Jussi Hepojoki
Opublikowane w: Viruses, Numer 13/2, 2021, ISSN 1999-4915
Wydawca: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v13020143

Introduction and Rapid Spread of SARS-CoV-2 Omicron Variant and Dynamics of BA.1 and BA.1.1 Sublineages, Finland, December 2021

Autorzy: Hanna Vauhkonen, Phuoc Truong Nguyen, Ravi Kant, Ilja Plyusnin, Mert Erdin, Satu Kurkela, Hanna Liimatainen, Niina Ikonen, Soile Blomqvist, Kirsi Liitsola, Erika Lindh, Otto Helve, Hanna Jarva, Raisa Loginov, Aino Palva, Tiina Hannunen, Sari Hannula, Mikko Parry, Paula Kauppi, Antti Vaheri, Tarja Sironen, Maija Lappalainen, Carita Savolainen-Kopra, Teemu Smura, Olli Vapalahti
Opublikowane w: Emerging Infectious Diseases, Numer 28/6, 2022, ISSN 1080-6040
Wydawca: US National Center for Infectious Diseases
DOI: 10.3201/eid2806.220515

Common Laboratory Mice Are Susceptible to Infection with the SARS-CoV-2 Beta Variant

Autorzy: Ravi Kant, Lauri Kareinen, Teemu Smura, Tobias L. Freitag, Sawan Kumar Jha, Kari Alitalo, Seppo Meri, Tarja Sironen, Kalle Saksela, Tomas Strandin, Anja Kipar and Olli Vapalahti
Opublikowane w: Viruses, Numer 13/11, 2021, ISSN 1999-4915
Wydawca: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v13112263

Evaluation of Production Lots of a Rapid Point-of-Care Lateral Flow Serological Test Intended for Identification of IgM and IgG against the N-Terminal Part of the Spike Protein (S1) of SARS-CoV-2

Autorzy: Tove Hoffman, Linda Kolstad, Bengt Rönnberg and Åke Lundkvist
Opublikowane w: Viruses, Numer 13/6, 2021, ISSN 1999-4915
Wydawca: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v13061043

Rapid SARS-CoV-2 whole-genome sequencing and analysis for informed public health decision-making in the Netherlands

Autorzy: Bas B. Oude Munnink, David F. Nieuwenhuijse, Mart Stein, Áine O’Toole, Manon Haverkate, Madelief Mollers, Sandra K. Kamga, Claudia Schapendonk, Mark Pronk, Pascal Lexmond, Anne van der Linden, Theo Bestebroer, Irina Chestakova, Ronald J. Overmars, Stefan van Nieuwkoop, Richard Molenkamp, Annemiek A. van der Eijk, Corine GeurtsvanKessel, Harry Vennema, Adam Meijer, Andrew Rambaut, Jaap van Disse
Opublikowane w: Nature Medicine, Numer 26/9, 2020, Strona(/y) 1405-1410, ISSN 1078-8956
Wydawca: Nature Publishing Group
DOI: 10.1038/s41591-020-0997-y

Temporal Dynamics of Influenza A(H5N1) Subtype before and after the Emergence of H5N8.

Autorzy: Amer F, Li R, Rabie N, El-Husseiny MH, Yehia N, Hagag NM, Samy M, Selim A, Hassan MK, Hassan WMM, Arafa AS, Lundkvist Å, Shahein MA, Naguib MM.
Opublikowane w: Viruses, Numer 13/8, 2021, ISSN 1999-4915
Wydawca: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v13081565

Multi‐species ELISA for the detection of antibodies against SARS‐CoV‐2 in animals

Autorzy: Kerstin Wernike, Andrea Aebischer, Anna Michelitsch, Donata Hoffmann, Conrad Freuling, Anne Balkema‐Buschmann, Annika Graaf, Thomas Müller, Nikolaus Osterrieder, Melanie Rissmann, Dennis Rubbenstroth, Jacob Schön, Claudia Schulz, Jakob Trimpert, Lorenz Ulrich, Asisa Volz, Thomas Mettenleiter, Martin Beer
Opublikowane w: Transboundary and Emerging Diseases, Numer 68/4, 2021, Strona(/y) 1779-1785, ISSN 1865-1674
Wydawca: Blackwell-Wiss.-Verl
DOI: 10.1111/tbed.13926

Genetic data in the fight against pandemics

Autorzy: Ágnes Becsei, Orsolya Anna Pipek, Péter Pollner, István Csabai
Opublikowane w: AK Journals, Numer 2/1, 2021, Strona(/y) 12-16, ISSN 2732-2688
Wydawca: Scientia et Securitas
DOI: 10.1556/112.2021.00006

One Day in Denmark: Comparison of Phenotypic and Genotypic Antimicrobial Susceptibility Testing in Bacterial Isolates From Clinical Settings

Autorzy: Ana Rita Rebelo, Valeria Bortolaia, Pimlapas Leekitcharoenphon, Dennis Schrøder Hansen, Hans Linde Nielsen, Svend Ellermann-Eriksen, Michael Kemp, Bent Løwe Røder, Niels Frimodt-Møller, Turid Snekloth Søndergaard, John Eugenio Coia, Claus Østergaard, Henrik Westh and Frank M. Aarestrup
Opublikowane w: Frontiers in Microbiology, Numer 13, 2022, ISSN 1664-302X
Wydawca: Frontiers Media
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Wydawca: Multidisciplinary Digital Publishing Institute (MDPI)
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Occurrence of Antibodies against SARS-CoV-2 in the Domestic Cat Population of Germany

Autorzy: Anna Michelitsch, Donata Hoffmann, Kerstin Wernike, Martin Beer
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Association between guilds of birds in the African-Western Palaearctic region and the tick species Hyalomma rufipes, one of the main vectors of Crimean-Congo hemorrhagic fever virus

Autorzy: Tove Hoffman, Laura G. Carra, Patrik Öhagen, Thord Fransson, Christos Barboutis, Dario Piacentini, Jordi Figuerola, Yosef Kiat, Alejandro Onrubia, Thomas G.T. Jaenson, Kenneth Nilsson, Åke Lundkvist, and Björn Olsen
Opublikowane w: One Health, 2021, ISSN 2352-7714
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Novel HPAIV H5N8 Reassortant (Clade 2.3.4.4b) Detected in Germany

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Seasonal coronavirus-specific B cells with limited SARS-CoV-2 cross-reactivity dominate the IgG response in severe COVID-19.

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Opublikowane w: Journal of Clinical Investigation, Numer 51, 2021, ISSN 1558-8238
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Antigenic cartography of SARS-CoV-2 reveals that Omicron BA.1 and BA.2 are antigenically distinct.

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Longitudinal analysis of T cell receptor repertoires reveals shared patterns of antigen-specific response to SARS-CoV-2 infection

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Evaluation of the use of alternative sample types for mosquito-borne flavivirus surveillance: Using Usutu virus as a model

Autorzy: Nnomzie C. Atama, Irina V. Chestakova, Erwin de Bruin, Tijs J. van den Berg, Emmanuelle Munger, Chantal Reusken, Bas B. Oude Munnink, Henk van der Jeugd, Judith M.A. van den Brand, Marion P.G. Koopmans and Reina S. Sikkema
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MINTyper: an outbreak-detection method for accurate and rapid SNP typing of clonal clusters with noisy long reads

Autorzy: Malte B Hallgren, Søren Overballe-Petersen, Ole Lund, Henrik Hasman, Philip T L C Clausen
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Experimental Infection of Mink with SARS-COV-2 Omicron Variant and Subsequent Clinical Disease

Autorzy: Jenni Virtanen, Kirsi Aaltonen, Kristel Kegler, Vinaya Venkat, Thanakorn Niamsap, Lauri Kareinen, Rasmus Malmgren, Olga Kivelä, Nina Atanasova, Pamela Österlund, Teemu Smura, Antti Sukura, Tomas Strandin, Lara Dutra, Olli Vapalahti, Heli Nordgren, Ravi Kant and Tarja Sironen
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Intranasal inhibitor broadly blocks SARS-CoV-2 including recent highly immunoevasive Omicron subvariants

Autorzy: Anna R. Mäkelä, Hasan Uğurlu, Liina Hannula, Ravi Kant, Petja Salminen, Riku Fagerlund, Sanna Mäki, Anu Haveri, Tomas Strandin, Lauri Kareinen, Jussi Hepojoki, Suvi Kuivanen, Lev Levanov, Arja Pasternack, Rauno A. Naves, Olli Ritvos, Pamela Österlund, Tarja Sironen, Olli Vapalahti, Anja Kipar, Juha T. Huiskonen, Ilona Rissanen and Kalle Saksela
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Iceland as Stepping Stone for Spread of Highly Pathogenic Avian Influenza Virus between Europe and North America

Autorzy: Anne Günther, Oliver Krone, Vilhjalmur Svansson, Anne Pohlmann, Jacqueline King, Gunnar Thor Hallgrimsson, Kristinn Haukur Skarphéðinsson, Heiða Sigurðardóttir, Stefán Ragnar Jónsson, Martin Beer, Brigitte Brugger, Timm Harder
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West Nile Virus spread in Europe - phylogeographic pattern analysis and key drivers

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SARS-CoV-2 Neutralizing Human Antibodies Protect Against Lower Respiratory Tract Disease in a Hamster Model

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Spa diversity and genetic characterization of t127 methicillin-resistant Staphylococcus aureus in a tertiary Greek hospital

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Risks of SARS-CoV-2 transmission between free-ranging animals and captive mink in the Netherlands

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Rapid spread of a new West Nile virus lineage 1 associated with increased risk of neuroinvasive disease during a large outbreak in northern Italy, 2022: One Health analysis.

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