Ecosystem in a box: Dissecting the dynamics of a defined microbial community in vitro

Deliverables

Open Research Data Pilot (1)

Data Management Plan

Compilation of the Open Research Data Management Plan

Publications

Peer reviewed articles (6)

Fast and flexible analysis of linked microbiome data with mako

Author(s): Lisa Röttjers, Karoline Faust
Published in: Nature Methods, 2022, Page(s) 51-54, ISSN 1548-7091
Publisher: Nature Publishing Group
DOI: 10.1038/s41592-021-01335-9

Null-model-based network comparison reveals core associations

Author(s): Lisa Röttjers, Doris Vandeputte, Jeroen Raes, Karoline Faust
Published in: ISME Communications, 1/1, 2021, ISSN 2730-6151
Publisher: Springer Nature
DOI: 10.1038/s43705-021-00036-w

manta: a Clustering Algorithm for Weighted Ecological Networks

Author(s): Lisa Röttjers, Karoline Faust
Published in: mSystems, 5/1, 2020, ISSN 2379-5077
Publisher: Scientific Society Publisher Alliance
DOI: 10.1128/msystems.00903-19

Synthetic ecology of the human gut microbiota

Author(s): Gino Vrancken, Ann C. Gregory, Geert R. B. Huys, Karoline Faust, Jeroen Raes
Published in: Nature Reviews Microbiology, 17/12, 2019, Page(s) 754-763, ISSN 1740-1526
Publisher: Nature Publishing Group
DOI: 10.1038/s41579-019-0264-8

Towards a Better Understanding of Microbial Community Dynamics through High-Throughput Cultivation and Data Integration

Author(s): Karoline Faust
Published in: mSystems, 4/3, 2019, ISSN 2379-5077
Publisher: mSystems
DOI: 10.1128/msystems.00101-19

Open challenges for microbial network construction and analysis

Author(s): Karoline Faust
Published in: The ISME Journal, 2021, ISSN 1751-7362
Publisher: Nature Publishing Group
DOI: 10.1038/s41396-021-01027-4