Technologies of the Future for Low-Cost Enzymes for Environment-Friendly Products

Deliverables

This deliverable will consist in a series of visual elements to create distinction and a strong visual identity for the FuturEnzyme project as well as template for presentations posters and reports

FuturEnzyme website

This deliverable will consist in an open website to assure communication towards the outside world that will be maintained and regularly updated throughout the project The website will serve as the main interface for distributing project information and results as elaborated in all WPs

FuturEnzyme project leaflet and brochure

This deliverable will consist in a series of leaflet and brochure materials for disseminating and communicating Project objectives and outcomes for consumers policymakers This material will be available through the website

Publications

Improving bioprocess conditions for the production of prodigiosin using a marine Serratia rubidaea strain

Author(s): Ricardo F. S. Pereira, Carla C. C. R. de Carvalho
Published in: Marine Drugs, Issue 22(4), 2024, Page(s) 142, ISSN 1660-3397
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/md22040142

Metagenomic mining for esterases in the microbial community of Los Rueldos acid mine drainage formation

Author(s): Paula Vidal, Mónica Martínez-Martínez, Laura Fernandez-Lopez, Sergi Roda, Celia Méndez-García, Olga V. Golyshina, Víctor Guallar, Ana I. Peláez, Manuel Ferrer
Published in: Frontiers in Microbiology, Issue Volume 13, 2022, Page(s) 868839, ISSN 1664-302X
Publisher: Frontiers Media
DOI: 10.3389/fmicb.2022.868839

An archaeal lid-containing feruloyl esterase degrades polyethylene terephthalate

Author(s): Perez-Garcia, Pablo; Chow, Jennifer; Costanzi, Elisa; Gurschke, Marno; Dittrich, Jonas; Dierkes, Robert F.; Molitor, Rebecka; Applegate, Violetta; Feuerriegel, Golo; Tete, Prince; Danso, Dominik; Thies, Stephan; Schumacher, Julia; Pfleger, Christopher; Jaeger, Karl-Erich; Gohlke, Holger; Smits, Sander H. J.; Schmitz, Ruth A.; Streit, Wolfgang R.
Published in: Communications Chemistry, Issue 6, 2023, Page(s) 193, ISSN 2399-3669
Publisher: Nature Portfolio
DOI: 10.1038/s42004-023-00998-z

A Choice Experiment Model for Sustainable Consumer Goods: A Systematic Literature Review and Workflow Design

Author(s): Saija, Maria Elena; Daniotti, Sara; Bosco, Diego; Re, Ilaria
Published in: A Choice Experiment Model for Sustainable Consumer Goods: A Systematic Literature Review and Workflow Design, Issue 15, 2023, Page(s) 13183, ISSN 2071-1050
Publisher: MDPI Open Access Publishing
DOI: 10.3390/su151713183

Process Development for Benzyl Alcohol Production by Whole-Cell Biocatalysis in Stirred and Packed Bed Reactors

Author(s): Carlos Rodrigues; Carla De Carvalho
Published in: Microorganisms, Issue Volume 10; Issue 5, 2022, Page(s) 966, ISSN 2076-2607
Publisher: MDPI
DOI: 10.3390/microorganisms10050966

A novel metagenome-derived viral RNA polymerase and its application in a cell-free expression system for metagenome screening

Author(s): Yuchen Han, Birhanu M. Kinfu, Fabian Blombach, Gwenny Cackett, Hongli Zhang, Pablo Pérez‑García, Ines Krohn, Jesper Salomon, Volkan Besirlioglu, Tayebeh Mirzaeigarakani, Ulrich Schwaneberg, Jennifer Chow, Finn Werner, Wolfgang R. Streit
Published in: Scientific Reports, Issue Volume 12, 2022, Page(s) 17882, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-022-22383-x

Design and Characterization of In-One Protease-Esterase PluriZyme

Author(s): Fernandez-Lopez, Laura; Roda, Sergi; Gonzalez-Alfonso, José L; Plou, Francisco J; Guallar, Víctor; Ferrer, Manuel
Published in: International Journal of Molecular Sciences, Issue Volume 23, Issue 21, 2022, Page(s) 13337, ISSN 1422-0067
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms232113337

Plasmonic photothermal activation of an organosilica shielded cold-adapted lipase coimmobilised with gold nanoparticles on silica particles

Author(s): Giunta, Carolina I; Nazemi, Seyed Amirabbas; Olesinska, Magdalena; Shahgaldian, Patrick
Published in: Nanoscale Advances, Issue 5, 2023, Page(s) 81-87, ISSN 2516-0230
Publisher: Royal Society of Chemistry
DOI: 10.1039/d2na00605g

Enhancing the Hydrolytic Activity of a Lipase towards Larger Triglycerides through Lid Domain Engineering

Author(s): Fernandez-Lopez, Laura; Roda, Sergi; Robles-Martín, A; Muñoz-Tafalla, Rubén; Almendral, David; Ferrer, Manuel; Guallar, Víctor
Published in: International Journal of Molecular Sciences, Issue 24, 2023, Page(s) 18, ISSN 1422-0067
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms241813768

Sub-micro- and nano-sized polyethylene terephthalate deconstruction with engineered protein nanopores

Author(s): Robles-Martín, Ana; Amigot-Sánchez, Rafael; Fernandez-Lopez, Laura; Gonzalez-Alfonso, Jose L; Roda, Sergi; Alcolea-Rodriguez, Víctor; Heras-Márquez, Diego; Almendral, David; Coscolín, Cristina; Plou, Francisco J; Portela, Raquel; Bañares, Miguel A; Martínez-del-Pozo, Álvaro; García-Linares, Sara; Ferrer, Manuel; Guallar, Víctor
Published in: Nature Catalysis, Issue 6, 2023, Page(s) 174–1185, ISSN 2520-1158
Publisher: Nature Portfolio
DOI: 10.1038/s41929-023-01048-6

Natranaeroarchaeum sulfidigenes gen. nov., sp. nov., carbohydrate-utilizing sulfur-respiring haloarchaeon from hypersaline soda lakes, a member of a new family Natronoarchaeaceae fam. nov. in the order Halobacteriales

Author(s): Dimitry Y. Sorokin, Michail Yakimov, Enzo Messina, Alexander Y. Merkel, Michel Koenen, Nicole J. Bale, Jaap S. Sinninghe Damsté
Published in: ystematic and Applied Microbiology, Issue Volume 45, 2022, Page(s) 126356, ISSN 0723-2020
Publisher: Elsevier BV
DOI: 10.1016/j.syapm.2022.126356

Increased Thermostability of an Engineered Flavin-Containing Monooxygenase to Remediate Trimethylamine in Fish Protein Hydrolysates

Author(s): Goris, Marianne; Cea-Rama, Isabel; Puntervoll, Pål; Ree, Rasmus; Almendral, David; Sanz-Aparicio, Julia; Ferrer, Manuel; Bjerga, Gro Elin Kjæreng
Published in: Applied and Environmental Microbiology, Issue 2, 2023, ISSN 0099-2240
Publisher: American Society for Microbiology
DOI: 10.1128/aem.00390-23

Anaerobic carboxydotrophy in sulfur-respiring haloarchaea from hypersaline lakes

Author(s): Dimitry Y. Sorokin, Alexander Y. Merkel, Enzo Messina, Claudia Tugui, Martin Pabst, Peter N. Golyshin & Michail M. Yakimov
Published in: The ISME Journal, Issue Volume 16, 2022, Page(s) 1534–1546, ISSN 1751-7362
Publisher: Nature Publishing Group
DOI: 10.1038/s41396-022-01206-x

Exploiting cyclodextrins as artificial chaperones to enhance enzyme protection through supramolecular engineering

Author(s): Foroutan Kalourazi, Ali; Amirabbas Nazemi, Seyed; Unniram Parambi, Ajmal Roshan; Muñoz-Tafalla, Ruben; Vidal, Paula; Shahangian, S. Shirin; Guallar, Víctor; Ferrer, Manuel; Shahgaldian, Patrick
Published in: Nanoscale, Issue 16, 2024, Page(s) 5123-5129, ISSN 2040-3372
Publisher: The Royal Society of Chemistry
DOI: 10.1039/D3NR06044F

Isolation and Characterization of a Serratia rubidaea from a Shallow Water Hydrothermal Vent

Author(s): Pereira, Ricardo F. S.; Ferreira, Maria J.; Oliveira, M. Conceição; Serra, Maria C.; de Carvalho, Carla C. C. R.
Published in: Marine Drugs, Issue 21, 2023, Page(s) 599, ISSN 1660-3397
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/md21120599

Halopseudomonas species: Cultivation and molecular genetic tools

Author(s): Kruse, Luzie; Loeschcke, Anita; de Witt, Jan; Wierckx, Nick; Jaeger, Karl-Erich; Thies, Stephan
Published in: Microbial Biotechnology, Issue 17, 2024, Page(s) e14369, ISSN 1751-7915
Publisher: Wiley
DOI: 10.1111/1751-7915.14369

Calm and Frenzy: marine obligate hydrocarbonoclastic bacteria sustain ocean wellness

Author(s): Michail M. Yakimov; Rafael Bargiela; Peter N. Golyshin
Published in: Current Opinion in Biotechnology, Issue Volume 73, 2022, Page(s) 337-345, ISSN 0958-1669
Publisher: Elsevier BV
DOI: 10.1016/j.copbio.2021.09.015

Crystal structure of a family VIII β-lactamase fold hydrolase reveals the molecular mechanism for its broad substrate scope

Author(s): Isabel Cea-Rama, Cristina Coscolín, Jose L. Gonzalez-Alfonso, Jog Raj, Marko Vasiljević, Francisco J. Plou, Manuel Ferrer, Julia Sanz-Aparicio
Published in: FEBS Journal, Issue Volume 289, Issue 21, 2022, Page(s) 6714-6730, ISSN 1742-464X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/febs.16554

Transforming an esterase into an enantioselective catecholase through bioconjugation of a versatile metal-chelating inhibitor

Author(s): Fernandez-Lopez, Laura; Cea-Rama, Isabel; Alvarez-Malmagro, Julia; Ressmann, Anna K; Gonzalez-Alfinso, Jose Luis; Coscolín, Cristina; Shahgaldian, Patrick; Plou, Francisco J; Modregger, Jan; Pita, Marcos; Sanz-Aparicio, Julia; Ferrer, Manuel
Published in: Chemical Communications, Issue 1, 2023, ISSN 1359-7345
Publisher: Royal Society of Chemistry
DOI: 10.1039/D3CC01946B

Thermophilic carboxylesterases from hydrothermal vents of the volcanic island of Ischia active on synthetic and biobased polymers and mycotoxins

Author(s): Distaso, Marco; Chernikova, Tatyana; Bargiela, Rafael; Coscolín, Cristina; Stogios, Peter; Gonzalez-Alfonso, Jose L; Lemak, Sofia; Khusnutdinova, Anna; Plou, Francisco J; Evdokimova, Elena; Savchenko, Alexei; Lunev, Evgenii A; Yakimov, Michail M; Golyshina, Olga; Ferrer, Manuel; Yakunin, Alexander F; Golyshin, Peter N
Published in: Applied and Environmental Microbiology, 2023, ISSN 0099-2240
Publisher: American Society for Microbiology
DOI: 10.1101/2022.09.17.508236

AsiteDesign: a Semirational Algorithm for an Automated EnzymeDesign

Author(s): Roda, Sergi; Terholsen, Henrik; Heike Meyer, Jule Ruth; Cañellas-Solé, Albert; Guallar, Víctor; Bornscheuer, Uwe; Kazemi, Masoud
Published in: The Journal of Physical Chemistry B, Issue 127, 2023, Page(s) 2661−2670, ISSN 1520-6106
Publisher: American Chemical Society
DOI: 10.1021/acs.jpcb.2c07091

The metagenome-derived esterase PET40 is highlypromiscuous and hydrolyses polyethyleneterephthalate (PET)

Author(s): Zhang, Hongli; Dierkes, Robert F.; Perez-Garcia, Pablo; Costanzi, Elisa; Dittrich, Jonas; Cea, Pablo A.; Gurschke, Marno; Applegate, Violetta; Partus, Kristina; Schmeisser, Christel; Pfleger, Christopher; Gohlke, Holger; Smits, Sander H. J.; Jennifer Chow; Wolfgang R. Streit
Published in: The FEBS Journal, 2023, ISSN 1742-464X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/febs.16924

EP-Pred: A Machine Learning Tool for Bioprospecting Promiscuous Ester Hydrolases

Author(s): Xiang, R; Fernandez-Lopez, Laura; Robles-Martín, Ana; Ferrer, Manuel; Guallar, Víctor
Published in: Biomolecules, Issue Volume 12, issue 10, 2022, Page(s) 1529, ISSN 2218-273X
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/biom12101529

Interplay of intracellular and trans-cellular DNA methylation in natural archaeal consortia

Author(s): Reva, Oleg N.; La Cono, Violetta; Crisafi, Francesca; Smedile, Francesco; Mudaliyar, Manasi; Ghosal, Debnath; Giuliano, Laura; Krupovic, Mart; Yakimov, Michail M.
Published in: Environmental Microbiology Reports, Issue 16, 2024, Page(s) e13258, ISSN 1758-2229
Publisher: Wiley-Blackwell
DOI: 10.1111/1758-2229.13258

A Plurizyme with Transaminase and Hydrolase Activity Catalyzes Cascade Reactions

Author(s): Sergi Roda, Laura Fernandez-Lopez, Marius Benedens, Alexander Bollinger, Stephan Thies, Julia Schumacher, Cristina Coscolín, Masoud Kazemi, Gerard Santiago, Christoph G. W. Gertzen, Jose L. Gonzalez-Alfonso, Francisco J. Plou, Karl-Erich Jaeger, Sander H. J. Smits, Manuel Ferrer, Víctor Guallar
Published in: Angewandte Chemie International Edition, Issue Volume 61, Issue 37, 2022, Page(s) e202207344, ISSN 1433-7851
Publisher: John Wiley & Sons Ltd.
DOI: 10.1002/anie.202207344

Cultivation of a vampire: ‘Candidatus Absconditicoccus praedator’

Author(s): Michail M. Yakimov; Alexander Y. Merkel; Vasil A. Gaisin; Martin Pilhofer; Enzo Messina; John E. Hallsworth; Alexandra A. Klyukina; Ekaterina N. Tikhonova; Vladimir M. Gorlenko
Published in: Environmental Microbiology, Issue Volume 24, Issue 1, 2021, Page(s) 30-49, ISSN 1462-2920
Publisher: Wiley-Blackwell
DOI: 10.1111/1462-2920.15823

Enzymes for consumer products to achieve climate neutrality

Author(s): Molina-Espeja, Patricia; Sanz-Aparicio, Julia; Golyshin, Peter N; Robles-Martín, Ana; Guallar, Victor; Beltrametti, Fabrizio; Müller, Markus; Yakimov, Mikhail; Modregger, Jan; van Logchem, Moniec; Corvini, Philippe; Shahgaldian, Patrick; Degering, Christian; Wieland, Susanne; Timm, Anne; de Carvalho, Carla CCR; Ilaria, Re; Daniotti, Sara; Thies, Stephan; Jaeger, Karl-Erich; Chow, Jennifer; Strei
Published in: Oxford Open Climate Change, Issue 3, 2023, Page(s) kgad003, ISSN 2634-4068
Publisher: Oxford University Press
DOI: 10.1093/oxfclm/kgad003

An archaeal lid-containing feruloyl-esterase degrades polyethylene terephthalate (PET)

Author(s): Perez-Garcia, Pablo; Chow, Jennifer; Costanzi, Elisa; Gurschke, Marno; Dittrich, Jonas; Dierkes, Robert F.; Molitor, Rebecka; Applegate, Violetta; Feuerriegel, Golo; Tete, Prince; Danso, Dominik; Thies, Stephan; Schumacher, Julia; Pfleger, Christopher; Jaeger, Karl-Erich; Gohlke, Holger; Smits, Sander H. J.; Schmitz, Ruth A.; Streit, Wolfgang R.
Published in: Communications chemistry, Issue 6, 2023, Page(s) 193, ISSN 2399-3669
Publisher: Nature Portfolio
DOI: 10.21203/rs.3.rs-3196380/v1

The mobility of the cap domain is essential for the substrate promiscuity of a family IV esterase from sorghum rhizosphere microbiome

Author(s): Distaso, Marco; Cea-Rama, Isabel; Coscolín, Cristina; Chernikova, Tatyana; Tran, Hai; Ferrer, Manuel; Sanz-Aparicio, Julia; Golyshin, Peter
Published in: Applied and Environmental Microbiology, 2023, ISSN 0099-2240
Publisher: American Society for Microbiology
DOI: 10.1128/aem.01807-22

Nanohaloarchaea as beneficiaries of xylan degradation by haloarchaea

Author(s): La Cono, Violetta; Messina, Enzo; Reva, Olga; Smedile, Francesco; La Spada, Gina; Crisafi, Francesca; Marturano, Laura; Miguez, Noa; Ferrer, Manuel; Selivanova, Elena A; Golyshina, Olga V; Golyshin, Peter N; Rohde, Manfred; Krupovic, Mart; Merkel, Alexander Y; Sorokin, Dimitry Y; Hallsworth, John E; Yakimov, Michail M
Published in: Microbial Biotechnology, 2023, ISSN 1751-7915
Publisher: Wiley-Blackwell
DOI: 10.1111/1751-7915.14272

Halapricum desulfuricans sp. nov., carbohydrate-utilizing, sulfur-respiring haloarchaea from hypersaline lakes

Author(s): Dimitry Y. Sorokin, Michail M. Yakimov, Enzo Messina, Alexander Y. Merkel, Michel Koenen, Nicole J. Bale, Jaap S. Sinninghe D
Published in: Systematic and Applied Microbiology, Issue 44, 2021, Page(s) 126249, ISSN 0723-2020
Publisher: Elsevier BV
DOI: 10.1016/j.syapm.2021.126249

Marine Bioprospecting, Biocatalysis and Process Development

Author(s): Rodrigues, Carlos J.C.; de Carvalho, Carla C.C.R.
Published in: Microorganisms, Issue Volume 10, issue 10, 2022, Page(s) 1965, ISSN 2076-2607
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/microorganisms10101965

Functional diversity of nanohaloarchaea within xylan-degrading consortia

Author(s): Oleg, Reva; Enzo, Messina; Violetta, La Cono; Francesca, Crisafi; Francesco, Smedile; Gina, La Spada; Laura, Marturano; Elena A, Selivanova; Manfred, Rohde; Mart, Krupovic; Michail M, Yakimov
Published in: Frontiers in Microbiology, Issue 14, 2023, Page(s) 1182464, ISSN 1664-302X
Publisher: Frontiers Media
DOI: 10.3389/fmicb.2023.1182464

Nanobiocatalysts with inbuilt cofactor recycling for oxidoreductase catalysis in organic solvents

Author(s): Sahlin, Jenny; Wu, Congyu; Buscemi, Andrea; Schärer, Claude; Nazemi, Seyed Amirabbas; Rejaul, S. K.; Herrera-Reinoza, Nataly; Jung, Thomas A.; Shahgaldian, Patrick
Published in: Nanoscale Advances, Issue 5, 2023, Page(s) 5036-5044, ISSN 2516-0230
Publisher: The Royal Society of Chemistry
DOI: 10.1039/D3NA00413A

Enzyme adaptation to habitat thermal legacy shapes the thermal plasticity of marine microbiomes

Author(s): Marasco, Ramona; Fusi, Marco; Coscolín, Cristina; Barozzi, Alan; Almendral, David; Bargiela, Rafael; Gohlke neé Nutschel, Christina; Pfleger, Christopher; Dittrich, Jonas; Gohlke, Holger; Matesaz, Ruth; Sanchez-Carrillo, Sergio; Mapelli, Francesca; Chernikova, Tatynana N; Golyshin, Peter N; Ferrer, Manuel; Daffonchio, Daniele
Published in: Nature Communications, Issue 14, 2023, Page(s) 1045, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-023-36610-0

Behind the Scenes of PluriZyme Designs

Author(s): Robles-Martín, Ana; Roda, Sergi; Muñoz-Tafalla, Rubén; Guallar, Víctor
Published in: Eng, Issue 5(1), 2024, Page(s) 91-103, ISSN 2673-4117
Publisher: MDPI
DOI: 10.3390/eng5010006

Harnessing extremophilic carboxylesterases for applications in polyester depolymerisation and plastic waste recycling

Author(s): Williams, Gwion B; Ma, Hairong; Khusnutdinova, Anna N.; Yakunin, Alexander F.; Golyshin, Peter N
Published in: Essays in Biochemistry, Issue 67, 2023, Page(s) 715-729, ISSN 0071-1365
Publisher: Portland Press, Ltd.
DOI: 10.1042/EBC20220255

Cultivating marine bacteria under laboratory conditions: Overcoming the “unculturable” dogma

Author(s): Carlos J. C. Rodrigues, Carla C. C. R. de Carvalho
Published in: Frontiers in Bioengineering and Biotechnology, Issue Volume 10, 2022, Page(s) 964589, ISSN 2296-4185
Publisher: Frontiers Media S.A.
DOI: 10.3389/fbioe.2022.964589

Fantastic enzymes: where and how to find them

Author(s): Ferrer, Manuel; Molina-Espeja, Patricia; Daniotti, Sara; Müller, Markus
Published in: The FEBS Network, 2022
Publisher: Wiley-Blackwell Publishing Ltd
DOI: 10.5281/zenodo.7260738

Se buscan enzimas, razón: el medio ambiente

Author(s): Manuel Ferrer, Cristina Coscolín Galán, Patricia Molina Espeja
Published in: The Conversation España, 2021, ISSN 2201-5639
Publisher: The Conversation
DOI: 10.5281/zenodo.5566131

The first archaeal PET-degrading enzyme belongs to the feruloyl-esterase family

Author(s): Perez-Garcia, Pablo; Chow, Jennifer; Costanzi, Elisa; Gurschke, Marno F; Dittrich, Jonas; Dierkes, Robert F; Applegate, Violetta; Feuerriegel, Golo; Tete, Prince; Danso, Dominik; Schumacher, Julia; Pfleger, Christopher; Gohlke, Holger; Smits, Sander HJ; Schmitz, Ruth A; Streit, Wolfgang
Published in: bioRvix, 2022, ISSN 2692-8205
Publisher: Cold Spring Harbor Laboratory
DOI: 10.1101/2022.10.14.512230

El uso de enzimas para conseguir productos de consumo diario más sostenibles

Author(s): Ferrer, Manuel; Molina, Patricia; Peñalver, Carolina
Published in: Revista Ambienta, Issue 128 (Innovation), 2021, ISSN 2605-4787
Publisher: Gobierno de España, Ministerio para la Transición Ecológica y el Reto Demográfico
DOI: 10.5281/zenodo.5384608

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