Technologies of the Future for Low-Cost Enzymes for Environment-Friendly Products

Resultado final

This deliverable will consist in a series of visual elements to create distinction and a strong visual identity for the FuturEnzyme project as well as template for presentations posters and reports

FuturEnzyme website

This deliverable will consist in an open website to assure communication towards the outside world that will be maintained and regularly updated throughout the project The website will serve as the main interface for distributing project information and results as elaborated in all WPs

FuturEnzyme project leaflet and brochure

This deliverable will consist in a series of leaflet and brochure materials for disseminating and communicating Project objectives and outcomes for consumers policymakers This material will be available through the website

Publicaciones

Improving bioprocess conditions for the production of prodigiosin using a marine Serratia rubidaea strain

Autores: Ricardo F. S. Pereira, Carla C. C. R. de Carvalho
Publicado en: Marine Drugs, Edición 22(4), 2024, Página(s) 142, ISSN 1660-3397
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/md22040142

Metagenomic mining for esterases in the microbial community of Los Rueldos acid mine drainage formation

Autores: Paula Vidal, Mónica Martínez-Martínez, Laura Fernandez-Lopez, Sergi Roda, Celia Méndez-García, Olga V. Golyshina, Víctor Guallar, Ana I. Peláez, Manuel Ferrer
Publicado en: Frontiers in Microbiology, Edición Volume 13, 2022, Página(s) 868839, ISSN 1664-302X
Editor: Frontiers Media
DOI: 10.3389/fmicb.2022.868839

An archaeal lid-containing feruloyl esterase degrades polyethylene terephthalate

Autores: Perez-Garcia, Pablo; Chow, Jennifer; Costanzi, Elisa; Gurschke, Marno; Dittrich, Jonas; Dierkes, Robert F.; Molitor, Rebecka; Applegate, Violetta; Feuerriegel, Golo; Tete, Prince; Danso, Dominik; Thies, Stephan; Schumacher, Julia; Pfleger, Christopher; Jaeger, Karl-Erich; Gohlke, Holger; Smits, Sander H. J.; Schmitz, Ruth A.; Streit, Wolfgang R.
Publicado en: Communications Chemistry, Edición 6, 2023, Página(s) 193, ISSN 2399-3669
Editor: Nature Portfolio
DOI: 10.1038/s42004-023-00998-z

A Choice Experiment Model for Sustainable Consumer Goods: A Systematic Literature Review and Workflow Design

Autores: Saija, Maria Elena; Daniotti, Sara; Bosco, Diego; Re, Ilaria
Publicado en: A Choice Experiment Model for Sustainable Consumer Goods: A Systematic Literature Review and Workflow Design, Edición 15, 2023, Página(s) 13183, ISSN 2071-1050
Editor: MDPI Open Access Publishing
DOI: 10.3390/su151713183

Process Development for Benzyl Alcohol Production by Whole-Cell Biocatalysis in Stirred and Packed Bed Reactors

Autores: Carlos Rodrigues; Carla De Carvalho
Publicado en: Microorganisms, Edición Volume 10; Edición 5, 2022, Página(s) 966, ISSN 2076-2607
Editor: MDPI
DOI: 10.3390/microorganisms10050966

A novel metagenome-derived viral RNA polymerase and its application in a cell-free expression system for metagenome screening

Autores: Yuchen Han, Birhanu M. Kinfu, Fabian Blombach, Gwenny Cackett, Hongli Zhang, Pablo Pérez‑García, Ines Krohn, Jesper Salomon, Volkan Besirlioglu, Tayebeh Mirzaeigarakani, Ulrich Schwaneberg, Jennifer Chow, Finn Werner, Wolfgang R. Streit
Publicado en: Scientific Reports, Edición Volume 12, 2022, Página(s) 17882, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1038/s41598-022-22383-x

Design and Characterization of In-One Protease-Esterase PluriZyme

Autores: Fernandez-Lopez, Laura; Roda, Sergi; Gonzalez-Alfonso, José L; Plou, Francisco J; Guallar, Víctor; Ferrer, Manuel
Publicado en: International Journal of Molecular Sciences, Edición Volume 23, Edición 21, 2022, Página(s) 13337, ISSN 1422-0067
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms232113337

Plasmonic photothermal activation of an organosilica shielded cold-adapted lipase coimmobilised with gold nanoparticles on silica particles

Autores: Giunta, Carolina I; Nazemi, Seyed Amirabbas; Olesinska, Magdalena; Shahgaldian, Patrick
Publicado en: Nanoscale Advances, Edición 5, 2023, Página(s) 81-87, ISSN 2516-0230
Editor: Royal Society of Chemistry
DOI: 10.1039/d2na00605g

Enhancing the Hydrolytic Activity of a Lipase towards Larger Triglycerides through Lid Domain Engineering

Autores: Fernandez-Lopez, Laura; Roda, Sergi; Robles-Martín, A; Muñoz-Tafalla, Rubén; Almendral, David; Ferrer, Manuel; Guallar, Víctor
Publicado en: International Journal of Molecular Sciences, Edición 24, 2023, Página(s) 18, ISSN 1422-0067
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms241813768

Sub-micro- and nano-sized polyethylene terephthalate deconstruction with engineered protein nanopores

Autores: Robles-Martín, Ana; Amigot-Sánchez, Rafael; Fernandez-Lopez, Laura; Gonzalez-Alfonso, Jose L; Roda, Sergi; Alcolea-Rodriguez, Víctor; Heras-Márquez, Diego; Almendral, David; Coscolín, Cristina; Plou, Francisco J; Portela, Raquel; Bañares, Miguel A; Martínez-del-Pozo, Álvaro; García-Linares, Sara; Ferrer, Manuel; Guallar, Víctor
Publicado en: Nature Catalysis, Edición 6, 2023, Página(s) 174–1185, ISSN 2520-1158
Editor: Nature Portfolio
DOI: 10.1038/s41929-023-01048-6

Natranaeroarchaeum sulfidigenes gen. nov., sp. nov., carbohydrate-utilizing sulfur-respiring haloarchaeon from hypersaline soda lakes, a member of a new family Natronoarchaeaceae fam. nov. in the order Halobacteriales

Autores: Dimitry Y. Sorokin, Michail Yakimov, Enzo Messina, Alexander Y. Merkel, Michel Koenen, Nicole J. Bale, Jaap S. Sinninghe Damsté
Publicado en: ystematic and Applied Microbiology, Edición Volume 45, 2022, Página(s) 126356, ISSN 0723-2020
Editor: Elsevier BV
DOI: 10.1016/j.syapm.2022.126356

Increased Thermostability of an Engineered Flavin-Containing Monooxygenase to Remediate Trimethylamine in Fish Protein Hydrolysates

Autores: Goris, Marianne; Cea-Rama, Isabel; Puntervoll, Pål; Ree, Rasmus; Almendral, David; Sanz-Aparicio, Julia; Ferrer, Manuel; Bjerga, Gro Elin Kjæreng
Publicado en: Applied and Environmental Microbiology, Edición 2, 2023, ISSN 0099-2240
Editor: American Society for Microbiology
DOI: 10.1128/aem.00390-23

Anaerobic carboxydotrophy in sulfur-respiring haloarchaea from hypersaline lakes

Autores: Dimitry Y. Sorokin, Alexander Y. Merkel, Enzo Messina, Claudia Tugui, Martin Pabst, Peter N. Golyshin & Michail M. Yakimov
Publicado en: The ISME Journal, Edición Volume 16, 2022, Página(s) 1534–1546, ISSN 1751-7362
Editor: Nature Publishing Group
DOI: 10.1038/s41396-022-01206-x

Exploiting cyclodextrins as artificial chaperones to enhance enzyme protection through supramolecular engineering

Autores: Foroutan Kalourazi, Ali; Amirabbas Nazemi, Seyed; Unniram Parambi, Ajmal Roshan; Muñoz-Tafalla, Ruben; Vidal, Paula; Shahangian, S. Shirin; Guallar, Víctor; Ferrer, Manuel; Shahgaldian, Patrick
Publicado en: Nanoscale, Edición 16, 2024, Página(s) 5123-5129, ISSN 2040-3372
Editor: The Royal Society of Chemistry
DOI: 10.1039/D3NR06044F

Isolation and Characterization of a Serratia rubidaea from a Shallow Water Hydrothermal Vent

Autores: Pereira, Ricardo F. S.; Ferreira, Maria J.; Oliveira, M. Conceição; Serra, Maria C.; de Carvalho, Carla C. C. R.
Publicado en: Marine Drugs, Edición 21, 2023, Página(s) 599, ISSN 1660-3397
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/md21120599

Halopseudomonas species: Cultivation and molecular genetic tools

Autores: Kruse, Luzie; Loeschcke, Anita; de Witt, Jan; Wierckx, Nick; Jaeger, Karl-Erich; Thies, Stephan
Publicado en: Microbial Biotechnology, Edición 17, 2024, Página(s) e14369, ISSN 1751-7915
Editor: Wiley
DOI: 10.1111/1751-7915.14369

Calm and Frenzy: marine obligate hydrocarbonoclastic bacteria sustain ocean wellness

Autores: Michail M. Yakimov; Rafael Bargiela; Peter N. Golyshin
Publicado en: Current Opinion in Biotechnology, Edición Volume 73, 2022, Página(s) 337-345, ISSN 0958-1669
Editor: Elsevier BV
DOI: 10.1016/j.copbio.2021.09.015

Crystal structure of a family VIII β-lactamase fold hydrolase reveals the molecular mechanism for its broad substrate scope

Autores: Isabel Cea-Rama, Cristina Coscolín, Jose L. Gonzalez-Alfonso, Jog Raj, Marko Vasiljević, Francisco J. Plou, Manuel Ferrer, Julia Sanz-Aparicio
Publicado en: FEBS Journal, Edición Volume 289, Edición 21, 2022, Página(s) 6714-6730, ISSN 1742-464X
Editor: Blackwell Publishing Inc.
DOI: 10.1111/febs.16554

Transforming an esterase into an enantioselective catecholase through bioconjugation of a versatile metal-chelating inhibitor

Autores: Fernandez-Lopez, Laura; Cea-Rama, Isabel; Alvarez-Malmagro, Julia; Ressmann, Anna K; Gonzalez-Alfinso, Jose Luis; Coscolín, Cristina; Shahgaldian, Patrick; Plou, Francisco J; Modregger, Jan; Pita, Marcos; Sanz-Aparicio, Julia; Ferrer, Manuel
Publicado en: Chemical Communications, Edición 1, 2023, ISSN 1359-7345
Editor: Royal Society of Chemistry
DOI: 10.1039/D3CC01946B

Thermophilic carboxylesterases from hydrothermal vents of the volcanic island of Ischia active on synthetic and biobased polymers and mycotoxins

Autores: Distaso, Marco; Chernikova, Tatyana; Bargiela, Rafael; Coscolín, Cristina; Stogios, Peter; Gonzalez-Alfonso, Jose L; Lemak, Sofia; Khusnutdinova, Anna; Plou, Francisco J; Evdokimova, Elena; Savchenko, Alexei; Lunev, Evgenii A; Yakimov, Michail M; Golyshina, Olga; Ferrer, Manuel; Yakunin, Alexander F; Golyshin, Peter N
Publicado en: Applied and Environmental Microbiology, 2023, ISSN 0099-2240
Editor: American Society for Microbiology
DOI: 10.1101/2022.09.17.508236

AsiteDesign: a Semirational Algorithm for an Automated EnzymeDesign

Autores: Roda, Sergi; Terholsen, Henrik; Heike Meyer, Jule Ruth; Cañellas-Solé, Albert; Guallar, Víctor; Bornscheuer, Uwe; Kazemi, Masoud
Publicado en: The Journal of Physical Chemistry B, Edición 127, 2023, Página(s) 2661−2670, ISSN 1520-6106
Editor: American Chemical Society
DOI: 10.1021/acs.jpcb.2c07091

The metagenome-derived esterase PET40 is highlypromiscuous and hydrolyses polyethyleneterephthalate (PET)

Autores: Zhang, Hongli; Dierkes, Robert F.; Perez-Garcia, Pablo; Costanzi, Elisa; Dittrich, Jonas; Cea, Pablo A.; Gurschke, Marno; Applegate, Violetta; Partus, Kristina; Schmeisser, Christel; Pfleger, Christopher; Gohlke, Holger; Smits, Sander H. J.; Jennifer Chow; Wolfgang R. Streit
Publicado en: The FEBS Journal, 2023, ISSN 1742-464X
Editor: Blackwell Publishing Inc.
DOI: 10.1111/febs.16924

EP-Pred: A Machine Learning Tool for Bioprospecting Promiscuous Ester Hydrolases

Autores: Xiang, R; Fernandez-Lopez, Laura; Robles-Martín, Ana; Ferrer, Manuel; Guallar, Víctor
Publicado en: Biomolecules, Edición Volume 12, issue 10, 2022, Página(s) 1529, ISSN 2218-273X
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/biom12101529

Interplay of intracellular and trans-cellular DNA methylation in natural archaeal consortia

Autores: Reva, Oleg N.; La Cono, Violetta; Crisafi, Francesca; Smedile, Francesco; Mudaliyar, Manasi; Ghosal, Debnath; Giuliano, Laura; Krupovic, Mart; Yakimov, Michail M.
Publicado en: Environmental Microbiology Reports, Edición 16, 2024, Página(s) e13258, ISSN 1758-2229
Editor: Wiley-Blackwell
DOI: 10.1111/1758-2229.13258

A Plurizyme with Transaminase and Hydrolase Activity Catalyzes Cascade Reactions

Autores: Sergi Roda, Laura Fernandez-Lopez, Marius Benedens, Alexander Bollinger, Stephan Thies, Julia Schumacher, Cristina Coscolín, Masoud Kazemi, Gerard Santiago, Christoph G. W. Gertzen, Jose L. Gonzalez-Alfonso, Francisco J. Plou, Karl-Erich Jaeger, Sander H. J. Smits, Manuel Ferrer, Víctor Guallar
Publicado en: Angewandte Chemie International Edition, Edición Volume 61, Edición 37, 2022, Página(s) e202207344, ISSN 1433-7851
Editor: John Wiley & Sons Ltd.
DOI: 10.1002/anie.202207344

Cultivation of a vampire: ‘Candidatus Absconditicoccus praedator’

Autores: Michail M. Yakimov; Alexander Y. Merkel; Vasil A. Gaisin; Martin Pilhofer; Enzo Messina; John E. Hallsworth; Alexandra A. Klyukina; Ekaterina N. Tikhonova; Vladimir M. Gorlenko
Publicado en: Environmental Microbiology, Edición Volume 24, Edición 1, 2021, Página(s) 30-49, ISSN 1462-2920
Editor: Wiley-Blackwell
DOI: 10.1111/1462-2920.15823

Enzymes for consumer products to achieve climate neutrality

Autores: Molina-Espeja, Patricia; Sanz-Aparicio, Julia; Golyshin, Peter N; Robles-Martín, Ana; Guallar, Victor; Beltrametti, Fabrizio; Müller, Markus; Yakimov, Mikhail; Modregger, Jan; van Logchem, Moniec; Corvini, Philippe; Shahgaldian, Patrick; Degering, Christian; Wieland, Susanne; Timm, Anne; de Carvalho, Carla CCR; Ilaria, Re; Daniotti, Sara; Thies, Stephan; Jaeger, Karl-Erich; Chow, Jennifer; Strei
Publicado en: Oxford Open Climate Change, Edición 3, 2023, Página(s) kgad003, ISSN 2634-4068
Editor: Oxford University Press
DOI: 10.1093/oxfclm/kgad003

An archaeal lid-containing feruloyl-esterase degrades polyethylene terephthalate (PET)

Autores: Perez-Garcia, Pablo; Chow, Jennifer; Costanzi, Elisa; Gurschke, Marno; Dittrich, Jonas; Dierkes, Robert F.; Molitor, Rebecka; Applegate, Violetta; Feuerriegel, Golo; Tete, Prince; Danso, Dominik; Thies, Stephan; Schumacher, Julia; Pfleger, Christopher; Jaeger, Karl-Erich; Gohlke, Holger; Smits, Sander H. J.; Schmitz, Ruth A.; Streit, Wolfgang R.
Publicado en: Communications chemistry, Edición 6, 2023, Página(s) 193, ISSN 2399-3669
Editor: Nature Portfolio
DOI: 10.21203/rs.3.rs-3196380/v1

The mobility of the cap domain is essential for the substrate promiscuity of a family IV esterase from sorghum rhizosphere microbiome

Autores: Distaso, Marco; Cea-Rama, Isabel; Coscolín, Cristina; Chernikova, Tatyana; Tran, Hai; Ferrer, Manuel; Sanz-Aparicio, Julia; Golyshin, Peter
Publicado en: Applied and Environmental Microbiology, 2023, ISSN 0099-2240
Editor: American Society for Microbiology
DOI: 10.1128/aem.01807-22

Nanohaloarchaea as beneficiaries of xylan degradation by haloarchaea

Autores: La Cono, Violetta; Messina, Enzo; Reva, Olga; Smedile, Francesco; La Spada, Gina; Crisafi, Francesca; Marturano, Laura; Miguez, Noa; Ferrer, Manuel; Selivanova, Elena A; Golyshina, Olga V; Golyshin, Peter N; Rohde, Manfred; Krupovic, Mart; Merkel, Alexander Y; Sorokin, Dimitry Y; Hallsworth, John E; Yakimov, Michail M
Publicado en: Microbial Biotechnology, 2023, ISSN 1751-7915
Editor: Wiley-Blackwell
DOI: 10.1111/1751-7915.14272

Halapricum desulfuricans sp. nov., carbohydrate-utilizing, sulfur-respiring haloarchaea from hypersaline lakes

Autores: Dimitry Y. Sorokin, Michail M. Yakimov, Enzo Messina, Alexander Y. Merkel, Michel Koenen, Nicole J. Bale, Jaap S. Sinninghe D
Publicado en: Systematic and Applied Microbiology, Edición 44, 2021, Página(s) 126249, ISSN 0723-2020
Editor: Elsevier BV
DOI: 10.1016/j.syapm.2021.126249

Marine Bioprospecting, Biocatalysis and Process Development

Autores: Rodrigues, Carlos J.C.; de Carvalho, Carla C.C.R.
Publicado en: Microorganisms, Edición Volume 10, issue 10, 2022, Página(s) 1965, ISSN 2076-2607
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/microorganisms10101965

Functional diversity of nanohaloarchaea within xylan-degrading consortia

Autores: Oleg, Reva; Enzo, Messina; Violetta, La Cono; Francesca, Crisafi; Francesco, Smedile; Gina, La Spada; Laura, Marturano; Elena A, Selivanova; Manfred, Rohde; Mart, Krupovic; Michail M, Yakimov
Publicado en: Frontiers in Microbiology, Edición 14, 2023, Página(s) 1182464, ISSN 1664-302X
Editor: Frontiers Media
DOI: 10.3389/fmicb.2023.1182464

Nanobiocatalysts with inbuilt cofactor recycling for oxidoreductase catalysis in organic solvents

Autores: Sahlin, Jenny; Wu, Congyu; Buscemi, Andrea; Schärer, Claude; Nazemi, Seyed Amirabbas; Rejaul, S. K.; Herrera-Reinoza, Nataly; Jung, Thomas A.; Shahgaldian, Patrick
Publicado en: Nanoscale Advances, Edición 5, 2023, Página(s) 5036-5044, ISSN 2516-0230
Editor: The Royal Society of Chemistry
DOI: 10.1039/D3NA00413A

Enzyme adaptation to habitat thermal legacy shapes the thermal plasticity of marine microbiomes

Autores: Marasco, Ramona; Fusi, Marco; Coscolín, Cristina; Barozzi, Alan; Almendral, David; Bargiela, Rafael; Gohlke neé Nutschel, Christina; Pfleger, Christopher; Dittrich, Jonas; Gohlke, Holger; Matesaz, Ruth; Sanchez-Carrillo, Sergio; Mapelli, Francesca; Chernikova, Tatynana N; Golyshin, Peter N; Ferrer, Manuel; Daffonchio, Daniele
Publicado en: Nature Communications, Edición 14, 2023, Página(s) 1045, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-023-36610-0

Behind the Scenes of PluriZyme Designs

Autores: Robles-Martín, Ana; Roda, Sergi; Muñoz-Tafalla, Rubén; Guallar, Víctor
Publicado en: Eng, Edición 5(1), 2024, Página(s) 91-103, ISSN 2673-4117
Editor: MDPI
DOI: 10.3390/eng5010006

Harnessing extremophilic carboxylesterases for applications in polyester depolymerisation and plastic waste recycling

Autores: Williams, Gwion B; Ma, Hairong; Khusnutdinova, Anna N.; Yakunin, Alexander F.; Golyshin, Peter N
Publicado en: Essays in Biochemistry, Edición 67, 2023, Página(s) 715-729, ISSN 0071-1365
Editor: Portland Press, Ltd.
DOI: 10.1042/EBC20220255

Cultivating marine bacteria under laboratory conditions: Overcoming the “unculturable” dogma

Autores: Carlos J. C. Rodrigues, Carla C. C. R. de Carvalho
Publicado en: Frontiers in Bioengineering and Biotechnology, Edición Volume 10, 2022, Página(s) 964589, ISSN 2296-4185
Editor: Frontiers Media S.A.
DOI: 10.3389/fbioe.2022.964589

Fantastic enzymes: where and how to find them

Autores: Ferrer, Manuel; Molina-Espeja, Patricia; Daniotti, Sara; Müller, Markus
Publicado en: The FEBS Network, 2022
Editor: Wiley-Blackwell Publishing Ltd
DOI: 10.5281/zenodo.7260738

Se buscan enzimas, razón: el medio ambiente

Autores: Manuel Ferrer, Cristina Coscolín Galán, Patricia Molina Espeja
Publicado en: The Conversation España, 2021, ISSN 2201-5639
Editor: The Conversation
DOI: 10.5281/zenodo.5566131

The first archaeal PET-degrading enzyme belongs to the feruloyl-esterase family

Autores: Perez-Garcia, Pablo; Chow, Jennifer; Costanzi, Elisa; Gurschke, Marno F; Dittrich, Jonas; Dierkes, Robert F; Applegate, Violetta; Feuerriegel, Golo; Tete, Prince; Danso, Dominik; Schumacher, Julia; Pfleger, Christopher; Gohlke, Holger; Smits, Sander HJ; Schmitz, Ruth A; Streit, Wolfgang
Publicado en: bioRvix, 2022, ISSN 2692-8205
Editor: Cold Spring Harbor Laboratory
DOI: 10.1101/2022.10.14.512230

El uso de enzimas para conseguir productos de consumo diario más sostenibles

Autores: Ferrer, Manuel; Molina, Patricia; Peñalver, Carolina
Publicado en: Revista Ambienta, Edición 128 (Innovation), 2021, ISSN 2605-4787
Editor: Gobierno de España, Ministerio para la Transición Ecológica y el Reto Demográfico
DOI: 10.5281/zenodo.5384608

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