Coherent Raman Imaging for the Molecular Study of the OrigiN of diseases

Livrables

D6.1 Data Management Plan

Data Management Plan

D5.4 Preliminary communication kit

Preliminary communication kit that will be updated throughout the project

D5.1 Project website, graphical identity of the CRIMSON project, project flyer and database of stakeholders

Project website graphical identity of the CRIMSON project project flyer and database of stakeholders

D5.5 Communication kit (mid-term)

Communication kit updated at M18

Publications

Comparing Transmission- and Epi-BCARS: A Transnational Round Robin on Solid State Materials

Auteurs: Hempel, Franz; Vernuccio, Federico; König, Lukas; Buschbeck, Robin; Rüsing, Michael; Cerullo, Giulio; Polli, Dario; Eng, Lukas M.
Publié dans: Applied Optics, Numéro Vol. 63, Numéro 1, 2024, Page(s) 112-121, ISSN 1559-128X
Éditeur: Optica
DOI: 10.48550/arxiv.2306.09701

Feasibility studies of multimodal nonlinear endoscopy using multicore fiber bundles for remote scanning from tissue sections to bulk organs

Auteurs: Hyeonsoo Bae, Marko Rodewald, Tobias Meyer-Zedler, Thomas W. Bocklitz, Gregor Matz, Bernhard Messerschmidt, Adrian T. Press, Michael Bauer, Orlando Guntinas-Lichius, Andreas Stallmach, Michael Schmitt & Juergen Popp
Publié dans: Scientific Reports volume 13, Article number: 13779, Numéro Scientific Reports volume 13, Article number: 13779, 2023, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/s41598-023-40944-6

Deep Ensemble Learning and Transfer Learning Methods for Classification of Senescent Cells from Nonlinear Optical Microscopy Images

Auteurs: Salvatore Sorrentino, Francesco Manetti, Arianna Bresci, Federico Vernuccio, Chiara Ceconello, Silvia Ghislanzoni, Italia Bongarzone, Renzo Vanna, Giulio Cerullo, Dario Polli
Publié dans: Front. Chem., Numéro 11, 1213981, 2023, ISSN 2296-2646
Éditeur: Frontiers
DOI: 10.3389/fchem.2023.1213981

Noninvasive morpho-molecular imaging reveals early therapy-induced senescence in human cancer cells

Auteurs: Arianna Bresci, Jeong Hee Kim, Silvia Ghislanzoni, Francesco Manetti, Lintong Wu, Federico Vernuccio, Chiara Ceconello, Salvatore Sorrentino, Ishan Barman, Italia Bongarzone, Giulio Cerullo, Renzo Vanna, And Dario Polli
Publié dans: Science Advances, Numéro 9, eadg6231, 2023, ISSN 2375-2548
Éditeur: American Association for the Advancement of Science
DOI: 10.1126/sciadv.adg6231

Reduced sulfatide content in deferoxamine-induced senescent HepG2 cells

Auteurs: Silvia Ghislanzoni, Gaia Martina Sarcinelli, Arianna Bresci, Francesco Manetti, Dario Polli, Antonella Tomassetti, Maria Teresa Radice, Italia Bongarzone
Publié dans: Int J Biochem Cell Biol ., Numéro Vol. 159, 2023, ISSN 1357-2725
Éditeur: Pergamon Press Ltd.
DOI: 10.1016/j.biocel.2023.106419

Full-Spectrum CARS Microscopy of Cells and Tissues with Ultrashort White-Light Continuum Pulses

Auteurs: Federico Vernuccio, Renzo Vanna, Chiara Ceconello, Arianna Bresci, Francesco Manetti, Salvatore Sorrentino, Silvia Ghislanzoni, Flavia ambertucci, Omar Motiño, Isabelle Martins, Guido Kroemer, Italia Bongarzone, Giulio Cerullo, and Dario Polli
Publié dans: J. Phys. Chem., Numéro B 127, 21, 2023, Page(s) 4733–4745, ISSN 0002-7863
Éditeur: American Chemical Society
DOI: 10.1021/acs.jpcb.3c01443

Experimental determination of shift-less aberration bases for sensorless adaptive optics in nonlinear microscopy

Auteurs: Benedetta Talone; Paolo Pozzi; Miriam Cavagnini; Dario Polli; Gianluca Pozzi; Jonathan Mapelli
Publié dans: Optics Express, Numéro 29, 2021, Page(s) 37617-37627, ISSN 2334-2536
Éditeur: Optica
DOI: 10.1364/oe.435262

Selective Detection in Impulsive Low-Frequency Raman Imaging Using Shaped Probe Pulses

Auteurs: Siddarth Shivkumar, Dekel Ranann, Samuel Metais, Sisira Suresh, Nicolas Forget, Randy Bartels, Dan Oron, and Hervé Rigneault
Publié dans: Phys. Rev. Applied, Numéro 19, 054075, 2023, ISSN 2643-1564
Éditeur: American Physical Sociery
DOI: 10.1103/physrevapplied.19.054075

Label-free multimodal nonlinear optical microscopy reveals features of bone composition in pathophysiological conditions

Auteurs: Benedetta Talone, Arianna Bresci, Francesco Manetti, Federico Vernuccio, Alejandro De La Cadena, Chiara Ceconello, Maria L. Schiavone, Stefano Mantero, Ciro Menale, Renzo Vanna, Giulio Cerullo, Cristina Sobacchi and Dario Polli
Publié dans: Front. Bioeng. Biotechnol., Numéro 22, 10:1042680, 2022, ISSN 2296-4185
Éditeur: Frontiers
DOI: 10.3389/fbioe.2022.1042680

Design and test of a rigid endomicroscopic system for multimodal imaging and femtosecond laser ablation

Auteurs: Chenting Lai, Matteo Calvarese, Karl Reichwald, Hyeonsoo Bae, Mohammadsadegh Vafaeinezhad, Tobias Meyer-Zedler, Franziska Hoffmann, Anna Mühlig, Tino Eidam, Fabian Stutzki, Bernhard Messerschmidt, Herbert Gross, Michael Schmitt, Orlando Guntinas-Lichius, Jürgen Popp
Publié dans: Journal of Biomedical Optics, Numéro Vol. 28, Numéro 6, 2023, ISSN 1560-2281
Éditeur: SPIE
DOI: 10.1117/1.jbo.28.6.066004

An obesogenic feedforward loop involving PPARγ, acyl-CoA binding protein and GABA receptor

Auteurs: Gerasimos Anagnostopoulos, Omar Motiño, Sijing Li, Vincent Carbonnier, Hui Chen, Valentina Sica, Sylvère Durand, Mélanie Bourgin, Fanny Aprahamian, Nitharsshini Nirmalathasan, Romain Donne, Chantal Desdouets, Marcelo Simon Sola, Konstantina Kotta, Léa Montégut, Flavia Lambertucci, Didier Surdez, Grossetête Sandrine, Olivier Delattre, Maria Chiara Maiuri, José Manuel Bravo-San Pedro, Isabell
Publié dans: Cell Death & Desease, Numéro 13(4), 2022, ISSN 2041-4889
Éditeur: Nature Publishing Group
DOI: 10.1038/s41419-022-04834-5

Nearly degenerate two-color impulsive coherent Raman hyperspectral imaging

Auteurs: David R. Smith, Siddarth Shivkumar, Jeff Field, Jesse W. Wilson, Hervé Rigneault, and Randy A. Bartels
Publié dans: Optics Letters, Numéro Vol. 47, Numéro 22,, 2022, Page(s) 5841-5844, ISSN 2334-2536
Éditeur: Optica
DOI: 10.1364/ol.467970

Deep reinforcement learning control of white-light continuum generation

Auteurs: Carlo Michele Valensise; Alessandro Giuseppi; Giulio Cerullo; Dario Polli
Publié dans: Optica, Numéro 8, 2021, Page(s) 239-242, ISSN 2334-2536
Éditeur: Optica
DOI: 10.1364/optica.414634

Ultrafast Spectral Tuning of a Fiber Laser for Time-Encoded Multiplex Coherent Raman Scattering Microscopy

Auteurs: Thomas Gottschall, Tobias Meyer-Zedler, Matthias Eibl, Tom Pfeiffer, Hubertus Hakert, Michael Schmitt, Robert Huber, Andreas Tünnermann, Jens Limpert, Juergen Popp
Publié dans: J. Phys. Chem. B, Numéro 127, 11, 2023, ISSN 0002-7863
Éditeur: American Chemical Society
DOI: 10.1021/acs.jpcb.2c09115

Double-modulations stimulated Raman scattering: how to image up to 16-fold faster

Auteurs: Sandro Heuke, Xavier Audier, Hervé Rigneault
Publié dans: Optics Letters, Numéro 15; 48(2), 2023, Page(s) 423-426, ISSN 2334-2536
Éditeur: Optica
DOI: 10.1364/ol.467514

Photon-noise: Is a single-pixel camera better than point scanning? A signal-to-noise ratio analysis for Hadamard and Cosine positive modulation

Auteurs: Camille Scotté, Frédéric Galland and Hervé Rigneault
Publié dans: J. Phys. Photonics, Numéro 5, 2023, ISSN 1742-6596
Éditeur: IOP Publishing
DOI: 10.48550/arxiv.2210.01915

Optical Diffraction Tomography and Raman Confocal Microscopy for the Investigation of Vacuoles Associated with Cancer Senescent Engulfing Cells

Auteurs: Silvia Ghislanzoni; Jeon Woong Kang; Arianna Bresci; Andrea Masella; Koseki J. Kobayashi-Kirschvink; Dario Polli; Italia Bongarzone; Peter T. C. So
Publié dans: Biosensors, Numéro Vol 13, Iss 11, 2023, Page(s) 1-15, ISSN 2079-6374
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.20944/preprints202310.0573.v1

Broadband Four-Wave Mixing Enhanced by Plasmonic Surface Lattice Resonance and Localized Surface Plasmon Resonance in an Azimuthally Chirped Grating

Auteurs: Abhik Chakraborty, Parijat Barman, Ankit Kumar Singh, Xiaofei Wu, Denis A. Akimov, Tobias Meyer-Zedler, Stefan Nolte, Carsten Ronning, Michael Schmitt, Jürgen Popp, Jer-Shing Huang
Publié dans: Laser & Photonics Reviews, Numéro Volume 17, Numéro 7, 2023, ISSN 1863-8899
Éditeur: WILEY Online LIBRARY
DOI: 10.1002/lpor.202200958

Broadband stimulated Raman imaging based on multi-channel lock-in detection for spectral histopathology

Auteurs: Alejandro De la Cadena, Federico Vernuccio, Andrea Ragni, Giuseppe Sciortino, Renzo Vanna, Carino Ferrante, Natalia Pediconi, Carlo Valensise, Luca Genchi, Sergey P. Laptenok, Andrea Doni, Marco Erreni, Tullio Scopigno, Carlo Liberale, Giorgio Ferrari, Marco Sampietro, Giulio Cerullo, Dario Polli
Publié dans: APL Photonics, Numéro 7, 2022, ISSN 2378-0967
Éditeur: APL Photonics
DOI: 10.1063/5.0093946

Removal of cross-phase modulation artifacts in ultrafast pump–probe dynamics by deep learning

Auteurs: A. Bresci; Michele Guizzardi; Carlo Michele Valensise; Fabio Marangi; Francesco Scotognella; Giulio Cerullo; Dario Polli
Publié dans: APL Photonics, Numéro 6, 2021, Page(s) 076104, ISSN 2378-0967
Éditeur: American Institute of Physics (United States)
DOI: 10.1063/5.0057404

Nonlinear Optical Signal Generation Mediated by a Plasmonic Azimuthally Chirped Grating

Auteurs: Parijat Barman, Abhik Chakraborty, Denis A. Akimov, Ankit Kumar Singh, Tobias Meyer-Zedler, Xiaofei Wu, Carsten Ronning, Michael Schmitt, Jürgen Popp*, and Jer-Shing Huan
Publié dans: Nano Lett. 2022, 22, 24, 9914–9919, Numéro Nano Lett. 2022, 22, 24, 9914–9919, 2022, Page(s) 9914–9919, ISSN 1530-6984
Éditeur: American Chemical Society
DOI: 10.1021/acs.nanolett.2c03348

Live Stimulated Raman Histology for the Near-Instant Assessment of Central Nervous System Samples

Auteurs: Romain Appay, Barbara Sarri, Sandro Heuke, Sébastien Boissonneau, Chang Liu, Etienne Dougy, Laurent Daniel, Didier Scavarda, Henry Dufour, Dominique Figarella-Branger, and Hervé Rigneault
Publié dans: Physical Chemistry B, Numéro 127, 16, 2023, Page(s) 3624–3631, ISSN 1463-9076
Éditeur: Royal Society of Chemistry
DOI: 10.1021/acs.jpcb.3c01156

High-throughput label-free detection of DNA-to-RNA transcription inhibition using brightfield microscopy and deep neural networks

Auteurs: Allan Sauvata; Giulia Cerrato; Juliette Humeau; Marion Leduc; Oliver Kepp; Guido Kroemer
Publié dans: Computers in biology andmedicine, Numéro 133, 2021, ISSN 0010-4825
Éditeur: Pergamon Press Ltd.
DOI: 10.1016/j.compbiomed.2021.104371

Comparison of denoising tools for the reconstruction of nonlinear multimodal images. Biomedical Optics Express

Auteurs: Rola Houhou, Elsie Quansah, Tobias Meyer-Zedler, Michael Schmitt, Franziska Hoffmann, Orlando Guntinas-Lichius, Jürgen Popp, and Thomas Bocklitz
Publié dans: Biomedical Optics Express, Numéro volume 14 issue 7, 2023, Page(s) 3259-3278, ISSN 2156-7085
Éditeur: The Optical Society
DOI: 10.1364/boe.477384

Phototoxicity induced in living HeLa cells by focused femtosecond laser pulses: a data-driven approach

Auteurs: Benedetta Talone; M. Bazzarelli; Andrea Schirato; F. Dello Vicario; Daniele Viola; Emanuela Jacchetti; M. Bregonzio; Manuela Teresa Raimondi; Giulio Cerullo; Dario Polli
Publié dans: Biomed Opt Express, Numéro 12, 2021, Page(s) 7886-7905, ISSN 2156-7085
Éditeur: The Optical Society
DOI: 10.1364/boe.441225

Fingerprint multiplex CARS at high speed based on supercontinuum generation in bulk media and deep learning spectral denoising

Auteurs: Federico Vernuccio, Arianna Bresci, Benedetta Talone, Alejandro De la Cadena, Chiara Ceconello, Stefano Mantero, Cristina Sobacchi, Renzo Vanna, Giulio Cerullo, and Dario Polli
Publié dans: Optics Express, Numéro 30, 2022, ISSN 1094-4087
Éditeur: Optical Society of America
DOI: 10.1364/oe.463032

Multiplex Chemical Imaging Based on Broadband Stimulated Raman Scattering Microscopy

Auteurs: Alejandro, De la Cadena; Federico, Vernuccio; Benedetta, Talone; Arianna, Bresci; Chiara, Ceconello; Subir, Das; Renzo, Vanna; Giulio, Cerullo; Dario, Polli
Publié dans: Journal of Visualized Experiments, Numéro 185: e63709, 2022, Page(s) 1-25, ISSN 1940-087X
Éditeur: MYJoVE Corporation
DOI: 10.3791/63709

Multi-Class Cancer Subtyping in Salivary Gland Carcinomas with MALDI Imaging and Deep Learning

Auteurs: David Pertzborn; Christoph Arolt; Günther Ernst; Oliver J. Lechtenfeld; Jan Kaesler; Daniela Pelzel; Orlando Guntinas-Lichius; Ferdinand von Eggeling; Franziska Hoffmann
Publié dans: Cancers, Numéro 14(17), 2022, ISSN 2072-6694
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/cancers14174342

A Proposal to Perform High Contrast Imaging of Human Palatine Tonsil with Cross Polarized Optical Coherence Tomography

Auteurs: Gargi Sharma, Asha Parmar, Franziska Hoffmann, Katharina Geißler, Ferdinand von Eggeling, Orlando Guntinas-Lichius, Kanwarpal Singh
Publié dans: Photonics, 2022, ISSN 2304-6732
Éditeur: MDPI
DOI: 10.3990/photonics9040259

Artificial Intelligence in Classical and Quantum Photonics

Auteurs: Federico Vernuccio; Arianna Bresci; Valeria Cimini; Alessandro Giuseppi; Giulio Cerullo; Dario Polli; Carlo Michele Valensise
Publié dans: Laser & Photonics Reviews, Numéro 16, 2022, Page(s) 2100399, ISSN 1863-8899
Éditeur: Wiley-VCH
DOI: 10.1002/lpor.202100399

CARS Imaging Advances Early Diagnosis of Cardiac Manifestation of Fabry Disease

Auteurs: Elen Tolstik, Nairveen Ali, Shuxia Guo, Paul Ebersbach, Dorothe Möllmann, Paula Arias-Loza, Johann Dierks, Irina Schuler, Erik Freier, Jörg Debus, Hideo A. Baba, Peter Nordbeck, Thomas Bocklitz and Kristina Lorenz
Publié dans: International Journal of Molecular Sciences, Numéro 23(10), 2022, ISSN 1422-0067
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms23105345

Multimodal multiphoton and vibrational microscopy reveals early therapy-induced senescence in human tumors: a non-invasive tool to prevent the risk of cancer relapse

Auteurs: Arianna Bresci, Francesco Manetti, Silvia Ghislanzoni, Federico Vernuccio, Salvatore Sorrentino, Chiara Ceconello, Renzo Vanna, Italia Bongarzone, Giulio Cerullo, Dario Polli
Publié dans: Proc. SPIE, Numéro Vol. 12384, 2023
Éditeur: SPIE
DOI: 10.1117/12.2648415

Label free highly multimodal nonlinear endoscope using hollow core fiber

Auteurs: Hervé Rigneault, Septier, Gaelle Brévalle, Naveen Gajendra, J Saucourt, Géraud Bouwmans, Andy Cassez, Matteo Conforti, Alexandre Kudlinski
Publié dans: J. Phys. Chem. B, Numéro 127, 16, 2023
Éditeur: American Chemical Society

Plug-And-Play Stimulated Raman Microscopy System for Broadband Coherent Vibrational Imaging

Auteurs: Francesco Crisafi, Benedetta Talone, Andrea Ragni, Gabriele Di Noia
Publié dans: (CLEO/Europe-EQEC) 2023 Conference on Lasers and Electro-Optics Europe & European Quantum Electronics Conference, 2023
Éditeur: European Physical Society
DOI: 10.1109/cleo/europe-eqec57999.2023.10231815

Video-rate wide-field broadband coherent anti-Stokes Raman scattering microscopy

Auteurs: Chiara Ceconello, Federico Vernuccio, Arianna Bresci, Francesco Manetti, Salvatore Sorrentino, Renzo Vanna, Giulio Cerullo, Dario Polli
Publié dans: Proc. SPIE, Numéro Vol. 12390, 2023
Éditeur: SPIE
DOI: 10.1117/12.2650628

Ultra-compact widely tunable dual-wavelength fiber-based sources for CARS and SRS imaging (Conference Presentation)

Auteurs: Armin Hoffmann; Florian Just; Christian Gaida; Sven Breitkopf; Oliver Herrfurth; Tobias Meyer-Zedler; Jürgen Popp; Tino Eidam; Jens Limpert
Publié dans: Proc. SPIE, Numéro Vol. PC12391, 2023
Éditeur: SPIE
DOI: 10.1117/12.2649987

Quantitative molecular absorption of cosmetic active molecules in human skin using coherent Raman imaging (CARS and SRS)

Auteurs: Hervé Rigneault, Barbara Sarri
Publié dans: Conference Papers, Photonics West, 2023
Éditeur: Photonics West

Multimodal vibrational and multiphoton nonlinear optical microscopy as a non-invasive tool to prevent human tumor recurrence

Auteurs: Arianna Bresci, Francesco Manetti, Silvia Ghislanzoni, Federico Vernuccio, Salvatore Sorrentino, Chiara Ceconello, Renzo Vanna, Italia Bongarzone, Giulio Cerullo, Dario Polli
Publié dans: Proc. SPIE, Numéro Vol. 12627, 2023
Éditeur: SPIE
DOI: 10.1117/12.2670918

High-speed vibrational microscopy and deep-learning algorithms to image cells and tissues

Auteurs: Dario Polli, Federico Vernuccio, Alejandro De la Cadena, Arianna Bresci, Chiara Ceconello, Francesco Manetti, Salvatore Sorrentino, Subir Das, Renzo Vanna, Giulio Cerullo
Publié dans: Proc. SPIE LASE, Numéro Vol. PC12406, 2023
Éditeur: SPIE
DOI: 10.1117/12.2648736

Live stimulated Raman histology for the near-instant assessment of central nervous system samples

Auteurs: Barbara Sarri; Sandro Heuke; Chang Liu; Sebastien Boissonneau; Hervé Rigneault; Romain Appay
Publié dans: Proc. SPIE, Numéro Vol. PC12373, 2023, ISSN 1520-6106
Éditeur: American Chemical Society
DOI: 10.1117/12.2648086

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