We investigated the presence of peptides with coeliac disease (CD)-active epitope in the five wheat species common wheat, spelt, durum wheat, emmer, and einkorn. In total, 494 peptides with CD-active epitope were identified. Considering the average of the eight cultivars of each species, spelt contained the highest number of different peptides with CD-active epitope (193 ± 12, mean ± SD). Einkorn showed the smallest variability of peptides (63 ± 4) but higher amounts of certain peptides compared to the other species.
A comprehensive database with proteins from wheat, rye, and barley containing known immunoreactive epitopes in the context of WRD and similar proteins not yet known to be immunoreactive for the in silico prediction of GIP was created. To compare gluten digestibility and the GIP profile of different flours, bread, and cakes after static in vitro digestion, the workflow was established from the food to discovery proteomics measurement and data analysis by optimizing all relevant steps including peptide clean-up, drying, dissolving and diluting the peptides, the proteomics measurement, and data evaluation. Following the successful optimization of the workflow for static in vitro digestion, different foods are now being prepared and studied using discovery proteomics.