Decoding the Multi-facets of Cellular Identity from Single-cell Data

Project Information

DecodeSC

Grant agreement ID: 101040660

DOI

10.3030/101040660

EC signature date 18 March 2022

Start date 1 October 2022

End date 30 September 2027

Funded under

• European Research Council (ERC)

Total cost

€ 1 484 125,00

EU contribution

€ 1 484 125,00

Coordinated by

THE HEBREW UNIVERSITY OF JERUSALEM
Israel

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Deliverables

Documents, reports (1)

Data Management Plan

Publications

Peer reviewed articles (7)

Robust reconstruction of single-cell RNA-seq data with iterative gene weight updates

Author(s): Yueqi, Sheng; Boaz, Barak; Mor, Nitzan
Published in: Bioinformatics, 2023, ISSN 1367-4811
Publisher: Oxford University Press
DOI: 10.1093/bioinformatics/btad253

scPrisma infers, filters and enhances topological signals in single-cell data using spectral template matching

Author(s): Jonathan Karin; Yonathan Bornfeld; Mor Nitzan
Published in: Nature Biotechnology, 2023, ISSN 1546-1696
Publisher: Nature Publishing Group
DOI: 10.1038/s41587-023-01663-5

Mapping lineage-traced cells across time points with moslin

Author(s): Marius Lange, Zoe Piran, Michal Klein, Bastiaan Spanjaard, Dominik Klein, Jan Philipp Junker, Fabian J. Theis, Mor Nitzan
Published in: Genome Biology, Issue 25, 2024, ISSN 1474-760X
Publisher: Springer Science and Business Media LLC
DOI: 10.1186/s13059-024-03422-4

TACCO unifies annotation transfer and decomposition of cell identities for single-cell and spatial omics

Author(s): Simon Mages; Noa Moriel; Inbal Avraham-Davidi; Evan Murray; Jan Watter; Fei Chen; Orit Rozenblatt-Rosen; Johanna Klughammer; Aviv Regev; Mor Nitzan
Published in: Nature Biotechnology, 2023, ISSN 1546-1696
Publisher: Nature Publishing Group
DOI: 10.1038/s41587-023-01657-3

Emergence of division of labor in tissues through cell interactions and spatial cues

Author(s): Miri Adler, Noa Moriel, Aleksandrina Goeva, Inbal Avraham-Davidi, Simon Mages, Taylor S. Adams, Naftali Kaminski, Evan Z. Macosko, Aviv Regev, Ruslan Medzhitov, Mor Nitzan
Published in: Cell Reports, Issue 42, 2024, ISSN 2211-1247
Publisher: Elsevier BV
DOI: 10.1016/j.celrep.2023.112412

Disentanglement of single-cell data with biolord

Author(s): Zoe Piran; Niv Cohen; Yedid Hoshen; Mor Nitzan
Published in: Nature Biotechnology, 2024, ISSN 1546-1696
Publisher: Nature Publishing Group
DOI: 10.1038/s41587-023-02079-x

Nature Communications

Author(s): Zoe Piran; Mor Nitzan
Published in: Nature Communications, Vol 15, Iss 1, Pp 1-17 (2024), 2024, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-024-44757-7

Conference proceedings (2)

Let's do the time-warp-attend: Learning topological invariants of dynamical systems

Author(s): Moriel, Noa; Ricci, Matthew; Nitzan, Mor
Published in: International Conference on Learning Representations (ICLR 2023), 2024
Publisher: International Conference on Learning Representations (ICLR)
DOI: 10.48550/arxiv.2312.09234

Phase2vec: Dynamical systems embedding with a physics-informed convolutional network

Author(s): Ricci, Matthew; Moriel, Noa; Piran, Zoe; Nitzan, Mor
Published in: International Conference on Learning Representations (ICLR), 2023
Publisher: International Conference on Learning Representations (ICLR)
DOI: 10.48550/arxiv.2212.03857