Tools and methods for extended plant PHENotyping and EnviroTyping services of European Research Infrastructures

CORDIS proporciona enlaces a los documentos públicos y las publicaciones de los proyectos de los programas marco HORIZONTE.

Los enlaces a los documentos y las publicaciones de los proyectos del Séptimo Programa Marco, así como los enlaces a algunos tipos de resultados específicos, como conjuntos de datos y «software», se obtienen dinámicamente de OpenAIRE .

Resultado final

Modelling use case design and data

Modelling UC design and data: Direct result of both tasks reports the design of services to be deployed for digital twins & hybrid learning. For each UC it details the experimentation framework and (historical) data.

Beta version of code that automatically provides the distribution of EO variables in a geographical perimeter arount a field of interest, implemented on a PHENET site where SIGEC information is readily available

Work plan for the UCs
Communication, Dissemination and Exploitation Plan

Communication, Dissemination and Exploitation Plan.

Policy Brief

Policy brief

Draft of specification for phenotyping devices
Update on the progress of the UCs

Update on the progress of the Use Cases

Publicaciones

Hybrid Phenology Modeling for Predicting Temperature Effects on Tree Dormancy

Autores: Ron Van Bree, Diego Marcos, Ioannis N. Athanasiadis
Publicado en: Proceedings of the AAAI Conference on Artificial Intelligence, Edición 39, 2025, ISSN 2374-3468
Editor: Association for the Advancement of Artificial Intelligence (AAAI)
DOI: 10.1609/AAAI.V39I27.35068

Soil-Gradient-Derived Bacterial Synthetic Communities Enhance Drought Tolerance in Quercus pubescens and Sorbus domestica Seedlings

Autores: Ivan Aleksieienko, Mariana Fernandes Hertel, Jérôme Reilhan, Marie de Castro, Bertrand Légeret, Halley Caixeta Oliveira, Ilja M. Reiter, Catherine Santaella
Publicado en: Plants, Edición 14, 2025, ISSN 2223-7747
Editor: MDPI AG
DOI: 10.3390/PLANTS14111659

The future role of regional research infrastructures and networks toward the global plant phenotyping community

Autores: Stijn Dhondt, Richard Dickmann, Sven Fahrner, Roland Pieruschka, Valerio Hoyos‐Villegas, Susie Robinson, Philipp von Gillhaussen
Publicado en: The Plant Phenome Journal, Edición 8, 2025, ISSN 2578-2703
Editor: Wiley
DOI: 10.1002/PPJ2.70048

Structured multimodal deep learning improves genomic prediction in future environments

Autores: Aike Potze, Fred van Eeuwijk, Ioannis N Athanasiadis
Publicado en: GENETICS, Edición 234, 2026, ISSN 1943-2631
Editor: Oxford University Press (OUP)
DOI: 10.1093/GENETICS/IYAG204

A review of the journey of field crop phenotyping: From trait stamp collections and fancy robots to phenomics-informed crop performance predictions

Autores: Lukas Roth, Afef Marzougui, Achim Walter
Publicado en: Journal of Plant Physiology, Edición 311, 2025, ISSN 0176-1617
Editor: Elsevier BV
DOI: 10.1016/J.JPLPH.2025.154542

The benefits and struggles of FAIR data: the case of reusing plant phenotyping data

Autores: Papoutsoglou, E.A., Athanasiadis, I.N., Visser, R.G.F., Finkers, R.
Publicado en: Scientific Data, Edición 10, 2023, ISSN 2052-4463
Editor: Nature
DOI: 10.1038/s41597-023-02364-z

The benefits and struggles of FAIR data: the case of reusing plant phenotyping data

Autores: Evangelia A. Papoutsoglou, Ioannis N. Athanasiadis, Richard G. F. Visser, Richard Finkers
Publicado en: Scientific Data, Edición 10, 2023, ISSN 2052-4463
Editor: Springer Science and Business Media LLC
DOI: 10.1038/S41597-023-02364-Z

Intercropping in Europe: a meta-analysis

Autores: Madhuri Paul
Publicado en: ARPHA Conference Abstracts, Edición 8, 2025, ISSN 2603-3925
Editor: Pensoft Publishers
DOI: 10.3897/ACA.8.E152342

Computers and Electronics in Agriculture

Autores: Jingye Han, Liangsheng Shi, Qi Yang, Jin Yu, Ioannis N. Athanasiadis
Publicado en: Computers and Electronics in Agriculture, 2026, ISSN 0168-1699
Editor: Elsevier BV
DOI: 10.1016/J.FCR.2025.109912

Soil-Gradient-Derived Bacterial Synthetic Communities Enhance Drought Tolerance in Quercus pubescens and Sorbus domestica Seedlings

Assessment of Fusarium Head Blight on wheat using near infrared hyperspectral imaging under field conditions

Autores: Damien Vincke, Damien Eylenbosch, Anne Chandelier, Vincent Baeten, Benoît Mercatoris, Philippe Vermeulen
Publicado en: Smart Agricultural Technology, Edición 12, 2026, ISSN 2772-3755
Editor: Elsevier BV
DOI: 10.1016/J.ATECH.2025.101426

Individual Segmentation of Intertwined Apple Trees in a Row via Prompt Engineering

Autores: Herearii Metuarea, François Laurens, Walter Guerra, Lidia Lozano, Andrea Patocchi, Shauny Van Hoye, Helin Dutagaci, Jeremy Labrosse, Pejman Rasti, David Rousseau
Publicado en: Sensors, Edición 25, 2025, ISSN 1424-8220
Editor: MDPI AG
DOI: 10.3390/S25154721

Implementing AI in Meta-analysis: Can domain-specific paper selection and data extraction be done effectively?

Autores: Madhuri Paul, Wopke van der Werf, Thomas Döring
Publicado en: 4th BioHackathon, de.NBI, 2026
Editor: 4th BioHackathon, de.NBI

Low-cost multispectral IoT sensors for in situ canopy reflectance measurements

Autores: Thomas, M., Mullens, V., Maes, A., Kenda, T., Defourny, P., Draye, X.
Publicado en: Phenet Annual Meeting, 2026
Editor: UCLouvain

Developing machine learning based models for soil parameters prediction and mapping using Vis-NIR spectroscopic data

Autores: Akos-Etele Csibi, Hans Sanden, Pavel Baykalov, Ruth Pereira, Anabel Cachada, Boris Rewald, David Perry
Publicado en: 2025
Editor: Copernicus GmbH
DOI: 10.5194/EGUSPHERE-EGU25-12259

Smart data for smart crops: Predicting performance with high-throughput phenotyping and modeling.

Autores: Martre, P
Publicado en: European Plant Phenotyping Symposium 2025, Bonn, Germany, July 13-14, 2025
Editor: EPPN

Leveraging on foundation deep neural models for individual apple tree segmentation in dense orchards via prompt engineering in RGB images

Autores: Herearii Metuarea, Julien Garnier, Kévin Guerif, Frédérique Didelot, François Laurens, Ludovic Bervas, Pejman Rasti, Helin Dutagaci, David Rousseau
Publicado en: 9th Workshop on Computer Vision in Plant Phenotyping and Agriculture (CVPPA), ECCV 2024 — Extended Abstracts, 2024
Editor: Springer Nature

Within-field Spatial Heterogeneity of Crop Growth from Multi-year Green Area Index Time Series Analysis

Autores: Kenda, T., Champagne, C., Draye, X., Defourny, P.
Publicado en: EO FOR AGRICULTURE UNDER PRESSURE, 2024
Editor: UCLouvain

Multi-frequency SAR time series for the detection of sowing events and early-season crop classification

Autores: Boland, B., Kenda, T., Bouchat, J., Defourny, P.
Publicado en: Living Planet Symposium 2025, 2025
Editor: Living Planet Symposium 2025

Phenotyping From Space: Evaluating Very High-Resolution Satellite-Based Trait Estimation in Winter Wheat Microplot Trials

Autores: Kenda, T., McAneny, R., Lopez-Lozano, R., Quesney, A., Weiss, M., Draye, X., Defourny, P.
Publicado en: European Plant Phenotyping Symposium, 2025
Editor: UCLouvain

Foreground-Aware Zero-Shot Plant Trait Segmentation in Trellised Crops Using Side View Monocular RGB Images

Autores: Abdoul Djalil Ousseini Hamza, Herearii Metuarea, Corentin Lothodé, Morgane Roth, Eric Duchêne, Lionel Ley, David Allétru, David Marc Rousseau
Publicado en: 11th Workshop on Computer Vision in Plant Phenotyping and Agriculture (CVPPA), ECCV 2026 — Extended Abstract, 2026
Editor: Open Review

A Layer-wise Analysis of Plant-Specialized Vision Transformers

Autores: Simon Ravé, Jean-Christophe Lombardo, Pejman Rasti, Alexis Joly, David Rousseau
Publicado en: RFIAP 2026 – Reconnaissance des Formes, Image, Apprentissage et Perception, 2026
Editor: University of Angers

OpenAlea 3.0: from ecophysiological models to community-driven use cases

Autores: Arsouze, Bauget, Besnier, Acker, Barillot, Bozonnet, Boudon, Boursiac, Bertheloot, Braud, Chelle, Delivoras, Durand, Fernandez, Gawinowski, Gérault, Godin, Maurel, Jullien, Louarn, Muller, Pallas, Pacitti, Perthame, Rees, Richard-Molard, Robert, Saudreau,
Publicado en: 11th International Conference on Functional-Structural Plant Models (FSPM), Edición 116-117
Editor: Christian Fournier, Christophe Pradal & Jean-Baptiste Durand.

Can plant traits explain the performance of an intercropping system? A wheat-pea field experiment

Autores: Timaeus Johannes, Weedon Odette, Finckh Maria
Publicado en: Mitteilungen der Gesellschaft für Pflanzenbauwissenschaften, 2023
Editor: Gesellschaft für Pflanzenbauwissenschaften (German Society for Crop Science).

Can wheat architectural organ traits be estimated from field data with a Plant Model approach ?

Autores: Besnier, Lopez Lozano, Fournier, Pradal
Publicado en: 11th International Conference on Functional-Structural Plant Models (FSPM), Edición 112-113, 2026
Editor: Christian Fournier, Christophe Pradal & Jean-Baptiste Durand.

Intercropping in Europe: a systematic mapping study of arable grain crops

Autores: Johannes Timaeus, Wopke van der Werf, Thomas Döring
Publicado en: "18th Congress of the European Society for Agronomy: ""Synergies for a resilient future: from knowledge to action"", Book of Abstracts (pp. 196–197). Rennes, France: The Couvent des Jacobins. Presenter: Madhuri Paul (mpaul1@uni-bonn.de).", 2024
Editor: 18th Congress of the European Society for Agronomy

Modeling Branching Processes Along Axes in Fruit Tree FSPMs: From Markov Chains to Transformers

Autores: Leclerc, Davenne, Costes, Durand, Beurier, Pradal, Boudon
Publicado en: 11th International Conference on Functional-Structural Plant Models (FSPM), Edición 71-72, 2026
Editor: Christian Fournier, Christophe Pradal & Jean-Baptiste Durand.

MPM: Mutual Pair Merging for Efficient Vision Transformers

Autores: Simon Ravé, Pejman Rasti, David Rousseau
Publicado en: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Findings, Edición 2998–3008, 2026
Editor: IEEE / Computer Vision Foundation

How Merge-Tolerant Are Vision Transformers for Wheat Phenotyping?

Autores: Simon Ravé, Pejman Rasti, David Rousseau
Publicado en: 11th Workshop on Computer Vision in Plant Phenotyping and Agriculture (CVPPA), ECCV 2026, 2026
Editor: Springer

Multispectral Imagery for Forest Conditions Monitoring of a Pilot Watershed in the Vosges, France

Autores: Wijesingha, J. – Supervisors: P. Defourny, M. Thomas, T. Kenda
Publicado en: UCLouvain – Master's thesis
Editor: UCLouvain

Quelle plus-value agronomique pour la pratique culturale de l'intercropping en Wallonie ? Analyse statistique pluriannuelle fondée sur les données de télédétection et du SIGeC

Autores: Loriau, M.-H. – Supervisors: X. Draye, P. Defourny
Publicado en: UCLouvain – Master's thesis, 2025
Editor: UCLouvain

Are differences between intercropping and monoculture practices reflected in satellite imagery data ? The Wallonia case

Autores: Blondel, A. – Supervisors: X. Draye, P. Defourny
Publicado en: UCLouvain – Master's thesis, 2025
Editor: UCLouvain

Soil tillage detection performances using Sentinel time series and Copernicus product in Wallonia

Autores: Baladi, M. – Supervisors: P. Defourny, T. Kenda
Publicado en: UCLouvain – Master's thesis, 2025
Editor: UCLouvain

Premiers tests d'un système IoT autonome et low-cost pour le phénotypage en parcelle d'agriculteur

Autores: Evrard, C. – Supervisors: P. Defourny, X. Draye
Publicado en: UCLouvain – Master's thesis, 2025
Editor: UCLouvain

Calibration procedure and metrological evaluation of a low-cost, multispectral IoT sensor for canopy reflectance measurements

Autores: Mullens, V. – Supervisors: P. Defourny, X. Draye
Publicado en: UCLouvain – Master's thesis, 2026
Editor: UCLouvain

Near-real time GAI retrieval for yield-predictive stages in winter wheat in Wallonia using optical and radar Sentinel products

Autores: Guamán Viveros, A. – Supervisors: P. Defourny, T. Kenda, Q. Deffense
Publicado en: UCLouvain – Master's thesis, 2025
Editor: UCLouvain

MixINN: Accelerating plant breeding by combining mixed models and deep learning for interaction prediction

Autores: Aike Potze, Fred van Eeuwijk, Ioannis N. Athanasiadis
Publicado en: arXiv, 2026
Editor: arXiv
DOI: 10.48550/ARXIV.2605.04744

Soil in ecological & agroecological settings

Autores: Ilja M. Reiter
Publicado en: PHENET webinar 4 : Digging into the complexity of soil components, Edición 13.12.2024, 2024
Editor: Zenodo
DOI: 10.5281/ZENODO.15194201

Sustainable Funding in EMPHASIS as a Distributed Research Infrastructure

Autores: Sven Fahrner, Roland Pieruschka
Publicado en: Management for Professionals, Research Infrastructure Management, 2026
Editor: Springer Nature Switzerland
DOI: 10.1007/978-3-032-20373-1_9

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