Tools and methods for extended plant PHENotyping and EnviroTyping services of European Research Infrastructures

CORDIS oferuje możliwość skorzystania z odnośników do publicznie dostępnych publikacji i rezultatów projektów realizowanych w ramach programów ramowych HORYZONT.

Odnośniki do rezultatów i publikacji związanych z poszczególnymi projektami 7PR, a także odnośniki do niektórych konkretnych kategorii wyników, takich jak zbiory danych i oprogramowanie, są dynamicznie pobierane z systemu OpenAIRE .

Rezultaty

Modelling use case design and data

Modelling UC design and data: Direct result of both tasks reports the design of services to be deployed for digital twins & hybrid learning. For each UC it details the experimentation framework and (historical) data.

Beta version of code that automatically provides the distribution of EO variables in a geographical perimeter arount a field of interest, implemented on a PHENET site where SIGEC information is readily available

Work plan for the UCs
Communication, Dissemination and Exploitation Plan

Communication, Dissemination and Exploitation Plan.

Policy Brief

Policy brief

Draft of specification for phenotyping devices
Update on the progress of the UCs

Update on the progress of the Use Cases

Publikacje

Hybrid Phenology Modeling for Predicting Temperature Effects on Tree Dormancy

Autorzy: Ron Van Bree, Diego Marcos, Ioannis N. Athanasiadis
Opublikowane w: Proceedings of the AAAI Conference on Artificial Intelligence, Numer 39, 2025, ISSN 2374-3468
Wydawca: Association for the Advancement of Artificial Intelligence (AAAI)
DOI: 10.1609/AAAI.V39I27.35068

Soil-Gradient-Derived Bacterial Synthetic Communities Enhance Drought Tolerance in Quercus pubescens and Sorbus domestica Seedlings

Autorzy: Ivan Aleksieienko, Mariana Fernandes Hertel, Jérôme Reilhan, Marie de Castro, Bertrand Légeret, Halley Caixeta Oliveira, Ilja M. Reiter, Catherine Santaella
Opublikowane w: Plants, Numer 14, 2025, ISSN 2223-7747
Wydawca: MDPI AG
DOI: 10.3390/PLANTS14111659

The future role of regional research infrastructures and networks toward the global plant phenotyping community

Autorzy: Stijn Dhondt, Richard Dickmann, Sven Fahrner, Roland Pieruschka, Valerio Hoyos‐Villegas, Susie Robinson, Philipp von Gillhaussen
Opublikowane w: The Plant Phenome Journal, Numer 8, 2025, ISSN 2578-2703
Wydawca: Wiley
DOI: 10.1002/PPJ2.70048

Structured multimodal deep learning improves genomic prediction in future environments

Autorzy: Aike Potze, Fred van Eeuwijk, Ioannis N Athanasiadis
Opublikowane w: GENETICS, Numer 234, 2026, ISSN 1943-2631
Wydawca: Oxford University Press (OUP)
DOI: 10.1093/GENETICS/IYAG204

A review of the journey of field crop phenotyping: From trait stamp collections and fancy robots to phenomics-informed crop performance predictions

Autorzy: Lukas Roth, Afef Marzougui, Achim Walter
Opublikowane w: Journal of Plant Physiology, Numer 311, 2025, ISSN 0176-1617
Wydawca: Elsevier BV
DOI: 10.1016/J.JPLPH.2025.154542

The benefits and struggles of FAIR data: the case of reusing plant phenotyping data

Autorzy: Papoutsoglou, E.A., Athanasiadis, I.N., Visser, R.G.F., Finkers, R.
Opublikowane w: Scientific Data, Numer 10, 2023, ISSN 2052-4463
Wydawca: Nature
DOI: 10.1038/s41597-023-02364-z

The benefits and struggles of FAIR data: the case of reusing plant phenotyping data

Autorzy: Evangelia A. Papoutsoglou, Ioannis N. Athanasiadis, Richard G. F. Visser, Richard Finkers
Opublikowane w: Scientific Data, Numer 10, 2023, ISSN 2052-4463
Wydawca: Springer Science and Business Media LLC
DOI: 10.1038/S41597-023-02364-Z

Intercropping in Europe: a meta-analysis

Autorzy: Madhuri Paul
Opublikowane w: ARPHA Conference Abstracts, Numer 8, 2025, ISSN 2603-3925
Wydawca: Pensoft Publishers
DOI: 10.3897/ACA.8.E152342

Computers and Electronics in Agriculture

Autorzy: Jingye Han, Liangsheng Shi, Qi Yang, Jin Yu, Ioannis N. Athanasiadis
Opublikowane w: Computers and Electronics in Agriculture, 2026, ISSN 0168-1699
Wydawca: Elsevier BV
DOI: 10.1016/J.FCR.2025.109912

Soil-Gradient-Derived Bacterial Synthetic Communities Enhance Drought Tolerance in Quercus pubescens and Sorbus domestica Seedlings

Assessment of Fusarium Head Blight on wheat using near infrared hyperspectral imaging under field conditions

Autorzy: Damien Vincke, Damien Eylenbosch, Anne Chandelier, Vincent Baeten, Benoît Mercatoris, Philippe Vermeulen
Opublikowane w: Smart Agricultural Technology, Numer 12, 2026, ISSN 2772-3755
Wydawca: Elsevier BV
DOI: 10.1016/J.ATECH.2025.101426

Individual Segmentation of Intertwined Apple Trees in a Row via Prompt Engineering

Autorzy: Herearii Metuarea, François Laurens, Walter Guerra, Lidia Lozano, Andrea Patocchi, Shauny Van Hoye, Helin Dutagaci, Jeremy Labrosse, Pejman Rasti, David Rousseau
Opublikowane w: Sensors, Numer 25, 2025, ISSN 1424-8220
Wydawca: MDPI AG
DOI: 10.3390/S25154721

Implementing AI in Meta-analysis: Can domain-specific paper selection and data extraction be done effectively?

Autorzy: Madhuri Paul, Wopke van der Werf, Thomas Döring
Opublikowane w: 4th BioHackathon, de.NBI, 2026
Wydawca: 4th BioHackathon, de.NBI

Low-cost multispectral IoT sensors for in situ canopy reflectance measurements

Autorzy: Thomas, M., Mullens, V., Maes, A., Kenda, T., Defourny, P., Draye, X.
Opublikowane w: Phenet Annual Meeting, 2026
Wydawca: UCLouvain

Developing machine learning based models for soil parameters prediction and mapping using Vis-NIR spectroscopic data

Autorzy: Akos-Etele Csibi, Hans Sanden, Pavel Baykalov, Ruth Pereira, Anabel Cachada, Boris Rewald, David Perry
Opublikowane w: 2025
Wydawca: Copernicus GmbH
DOI: 10.5194/EGUSPHERE-EGU25-12259

Smart data for smart crops: Predicting performance with high-throughput phenotyping and modeling.

Autorzy: Martre, P
Opublikowane w: European Plant Phenotyping Symposium 2025, Bonn, Germany, July 13-14, 2025
Wydawca: EPPN

Leveraging on foundation deep neural models for individual apple tree segmentation in dense orchards via prompt engineering in RGB images

Autorzy: Herearii Metuarea, Julien Garnier, Kévin Guerif, Frédérique Didelot, François Laurens, Ludovic Bervas, Pejman Rasti, Helin Dutagaci, David Rousseau
Opublikowane w: 9th Workshop on Computer Vision in Plant Phenotyping and Agriculture (CVPPA), ECCV 2024 — Extended Abstracts, 2024
Wydawca: Springer Nature

Within-field Spatial Heterogeneity of Crop Growth from Multi-year Green Area Index Time Series Analysis

Autorzy: Kenda, T., Champagne, C., Draye, X., Defourny, P.
Opublikowane w: EO FOR AGRICULTURE UNDER PRESSURE, 2024
Wydawca: UCLouvain

Multi-frequency SAR time series for the detection of sowing events and early-season crop classification

Autorzy: Boland, B., Kenda, T., Bouchat, J., Defourny, P.
Opublikowane w: Living Planet Symposium 2025, 2025
Wydawca: Living Planet Symposium 2025

Phenotyping From Space: Evaluating Very High-Resolution Satellite-Based Trait Estimation in Winter Wheat Microplot Trials

Autorzy: Kenda, T., McAneny, R., Lopez-Lozano, R., Quesney, A., Weiss, M., Draye, X., Defourny, P.
Opublikowane w: European Plant Phenotyping Symposium, 2025
Wydawca: UCLouvain

Foreground-Aware Zero-Shot Plant Trait Segmentation in Trellised Crops Using Side View Monocular RGB Images

Autorzy: Abdoul Djalil Ousseini Hamza, Herearii Metuarea, Corentin Lothodé, Morgane Roth, Eric Duchêne, Lionel Ley, David Allétru, David Marc Rousseau
Opublikowane w: 11th Workshop on Computer Vision in Plant Phenotyping and Agriculture (CVPPA), ECCV 2026 — Extended Abstract, 2026
Wydawca: Open Review

A Layer-wise Analysis of Plant-Specialized Vision Transformers

Autorzy: Simon Ravé, Jean-Christophe Lombardo, Pejman Rasti, Alexis Joly, David Rousseau
Opublikowane w: RFIAP 2026 – Reconnaissance des Formes, Image, Apprentissage et Perception, 2026
Wydawca: University of Angers

OpenAlea 3.0: from ecophysiological models to community-driven use cases

Autorzy: Arsouze, Bauget, Besnier, Acker, Barillot, Bozonnet, Boudon, Boursiac, Bertheloot, Braud, Chelle, Delivoras, Durand, Fernandez, Gawinowski, Gérault, Godin, Maurel, Jullien, Louarn, Muller, Pallas, Pacitti, Perthame, Rees, Richard-Molard, Robert, Saudreau,
Opublikowane w: 11th International Conference on Functional-Structural Plant Models (FSPM), Numer 116-117
Wydawca: Christian Fournier, Christophe Pradal & Jean-Baptiste Durand.

Can plant traits explain the performance of an intercropping system? A wheat-pea field experiment

Autorzy: Timaeus Johannes, Weedon Odette, Finckh Maria
Opublikowane w: Mitteilungen der Gesellschaft für Pflanzenbauwissenschaften, 2023
Wydawca: Gesellschaft für Pflanzenbauwissenschaften (German Society for Crop Science).

Can wheat architectural organ traits be estimated from field data with a Plant Model approach ?

Autorzy: Besnier, Lopez Lozano, Fournier, Pradal
Opublikowane w: 11th International Conference on Functional-Structural Plant Models (FSPM), Numer 112-113, 2026
Wydawca: Christian Fournier, Christophe Pradal & Jean-Baptiste Durand.

Intercropping in Europe: a systematic mapping study of arable grain crops

Autorzy: Johannes Timaeus, Wopke van der Werf, Thomas Döring
Opublikowane w: "18th Congress of the European Society for Agronomy: ""Synergies for a resilient future: from knowledge to action"", Book of Abstracts (pp. 196–197). Rennes, France: The Couvent des Jacobins. Presenter: Madhuri Paul (mpaul1@uni-bonn.de).", 2024
Wydawca: 18th Congress of the European Society for Agronomy

Modeling Branching Processes Along Axes in Fruit Tree FSPMs: From Markov Chains to Transformers

Autorzy: Leclerc, Davenne, Costes, Durand, Beurier, Pradal, Boudon
Opublikowane w: 11th International Conference on Functional-Structural Plant Models (FSPM), Numer 71-72, 2026
Wydawca: Christian Fournier, Christophe Pradal & Jean-Baptiste Durand.

MPM: Mutual Pair Merging for Efficient Vision Transformers

Autorzy: Simon Ravé, Pejman Rasti, David Rousseau
Opublikowane w: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Findings, Numer 2998–3008, 2026
Wydawca: IEEE / Computer Vision Foundation

How Merge-Tolerant Are Vision Transformers for Wheat Phenotyping?

Autorzy: Simon Ravé, Pejman Rasti, David Rousseau
Opublikowane w: 11th Workshop on Computer Vision in Plant Phenotyping and Agriculture (CVPPA), ECCV 2026, 2026
Wydawca: Springer

Multispectral Imagery for Forest Conditions Monitoring of a Pilot Watershed in the Vosges, France

Autorzy: Wijesingha, J. – Supervisors: P. Defourny, M. Thomas, T. Kenda
Opublikowane w: UCLouvain – Master's thesis
Wydawca: UCLouvain

Quelle plus-value agronomique pour la pratique culturale de l'intercropping en Wallonie ? Analyse statistique pluriannuelle fondée sur les données de télédétection et du SIGeC

Autorzy: Loriau, M.-H. – Supervisors: X. Draye, P. Defourny
Opublikowane w: UCLouvain – Master's thesis, 2025
Wydawca: UCLouvain

Are differences between intercropping and monoculture practices reflected in satellite imagery data ? The Wallonia case

Autorzy: Blondel, A. – Supervisors: X. Draye, P. Defourny
Opublikowane w: UCLouvain – Master's thesis, 2025
Wydawca: UCLouvain

Soil tillage detection performances using Sentinel time series and Copernicus product in Wallonia

Autorzy: Baladi, M. – Supervisors: P. Defourny, T. Kenda
Opublikowane w: UCLouvain – Master's thesis, 2025
Wydawca: UCLouvain

Premiers tests d'un système IoT autonome et low-cost pour le phénotypage en parcelle d'agriculteur

Autorzy: Evrard, C. – Supervisors: P. Defourny, X. Draye
Opublikowane w: UCLouvain – Master's thesis, 2025
Wydawca: UCLouvain

Calibration procedure and metrological evaluation of a low-cost, multispectral IoT sensor for canopy reflectance measurements

Autorzy: Mullens, V. – Supervisors: P. Defourny, X. Draye
Opublikowane w: UCLouvain – Master's thesis, 2026
Wydawca: UCLouvain

Near-real time GAI retrieval for yield-predictive stages in winter wheat in Wallonia using optical and radar Sentinel products

Autorzy: Guamán Viveros, A. – Supervisors: P. Defourny, T. Kenda, Q. Deffense
Opublikowane w: UCLouvain – Master's thesis, 2025
Wydawca: UCLouvain

MixINN: Accelerating plant breeding by combining mixed models and deep learning for interaction prediction

Autorzy: Aike Potze, Fred van Eeuwijk, Ioannis N. Athanasiadis
Opublikowane w: arXiv, 2026
Wydawca: arXiv
DOI: 10.48550/ARXIV.2605.04744

Soil in ecological & agroecological settings

Autorzy: Ilja M. Reiter
Opublikowane w: PHENET webinar 4 : Digging into the complexity of soil components, Numer 13.12.2024, 2024
Wydawca: Zenodo
DOI: 10.5281/ZENODO.15194201

Sustainable Funding in EMPHASIS as a Distributed Research Infrastructure

Autorzy: Sven Fahrner, Roland Pieruschka
Opublikowane w: Management for Professionals, Research Infrastructure Management, 2026
Wydawca: Springer Nature Switzerland
DOI: 10.1007/978-3-032-20373-1_9

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