Tools and methods for extended plant PHENotyping and EnviroTyping services of European Research Infrastructures

CORDIS fornisce collegamenti ai risultati finali pubblici e alle pubblicazioni dei progetti ORIZZONTE.

I link ai risultati e alle pubblicazioni dei progetti del 7° PQ, così come i link ad alcuni tipi di risultati specifici come dataset e software, sono recuperati dinamicamente da .OpenAIRE .

Risultati finali

Modelling use case design and data

Modelling UC design and data: Direct result of both tasks reports the design of services to be deployed for digital twins & hybrid learning. For each UC it details the experimentation framework and (historical) data.

Beta version of code that automatically provides the distribution of EO variables in a geographical perimeter arount a field of interest, implemented on a PHENET site where SIGEC information is readily available

Work plan for the UCs
Communication, Dissemination and Exploitation Plan

Communication, Dissemination and Exploitation Plan.

Policy Brief

Policy brief

Draft of specification for phenotyping devices
Update on the progress of the UCs

Update on the progress of the Use Cases

Pubblicazioni

Hybrid Phenology Modeling for Predicting Temperature Effects on Tree Dormancy

Autori: Ron Van Bree, Diego Marcos, Ioannis N. Athanasiadis
Pubblicato in: Proceedings of the AAAI Conference on Artificial Intelligence, Numero 39, 2025, ISSN 2374-3468
Editore: Association for the Advancement of Artificial Intelligence (AAAI)
DOI: 10.1609/AAAI.V39I27.35068

Soil-Gradient-Derived Bacterial Synthetic Communities Enhance Drought Tolerance in Quercus pubescens and Sorbus domestica Seedlings

Autori: Ivan Aleksieienko, Mariana Fernandes Hertel, Jérôme Reilhan, Marie de Castro, Bertrand Légeret, Halley Caixeta Oliveira, Ilja M. Reiter, Catherine Santaella
Pubblicato in: Plants, Numero 14, 2025, ISSN 2223-7747
Editore: MDPI AG
DOI: 10.3390/PLANTS14111659

The future role of regional research infrastructures and networks toward the global plant phenotyping community

Autori: Stijn Dhondt, Richard Dickmann, Sven Fahrner, Roland Pieruschka, Valerio Hoyos‐Villegas, Susie Robinson, Philipp von Gillhaussen
Pubblicato in: The Plant Phenome Journal, Numero 8, 2025, ISSN 2578-2703
Editore: Wiley
DOI: 10.1002/PPJ2.70048

Structured multimodal deep learning improves genomic prediction in future environments

Autori: Aike Potze, Fred van Eeuwijk, Ioannis N Athanasiadis
Pubblicato in: GENETICS, Numero 234, 2026, ISSN 1943-2631
Editore: Oxford University Press (OUP)
DOI: 10.1093/GENETICS/IYAG204

A review of the journey of field crop phenotyping: From trait stamp collections and fancy robots to phenomics-informed crop performance predictions

Autori: Lukas Roth, Afef Marzougui, Achim Walter
Pubblicato in: Journal of Plant Physiology, Numero 311, 2025, ISSN 0176-1617
Editore: Elsevier BV
DOI: 10.1016/J.JPLPH.2025.154542

The benefits and struggles of FAIR data: the case of reusing plant phenotyping data

Autori: Papoutsoglou, E.A., Athanasiadis, I.N., Visser, R.G.F., Finkers, R.
Pubblicato in: Scientific Data, Numero 10, 2023, ISSN 2052-4463
Editore: Nature
DOI: 10.1038/s41597-023-02364-z

The benefits and struggles of FAIR data: the case of reusing plant phenotyping data

Autori: Evangelia A. Papoutsoglou, Ioannis N. Athanasiadis, Richard G. F. Visser, Richard Finkers
Pubblicato in: Scientific Data, Numero 10, 2023, ISSN 2052-4463
Editore: Springer Science and Business Media LLC
DOI: 10.1038/S41597-023-02364-Z

Intercropping in Europe: a meta-analysis

Autori: Madhuri Paul
Pubblicato in: ARPHA Conference Abstracts, Numero 8, 2025, ISSN 2603-3925
Editore: Pensoft Publishers
DOI: 10.3897/ACA.8.E152342

Computers and Electronics in Agriculture

Autori: Jingye Han, Liangsheng Shi, Qi Yang, Jin Yu, Ioannis N. Athanasiadis
Pubblicato in: Computers and Electronics in Agriculture, 2026, ISSN 0168-1699
Editore: Elsevier BV
DOI: 10.1016/J.FCR.2025.109912

Soil-Gradient-Derived Bacterial Synthetic Communities Enhance Drought Tolerance in Quercus pubescens and Sorbus domestica Seedlings

Assessment of Fusarium Head Blight on wheat using near infrared hyperspectral imaging under field conditions

Autori: Damien Vincke, Damien Eylenbosch, Anne Chandelier, Vincent Baeten, Benoît Mercatoris, Philippe Vermeulen
Pubblicato in: Smart Agricultural Technology, Numero 12, 2026, ISSN 2772-3755
Editore: Elsevier BV
DOI: 10.1016/J.ATECH.2025.101426

Individual Segmentation of Intertwined Apple Trees in a Row via Prompt Engineering

Autori: Herearii Metuarea, François Laurens, Walter Guerra, Lidia Lozano, Andrea Patocchi, Shauny Van Hoye, Helin Dutagaci, Jeremy Labrosse, Pejman Rasti, David Rousseau
Pubblicato in: Sensors, Numero 25, 2025, ISSN 1424-8220
Editore: MDPI AG
DOI: 10.3390/S25154721

Implementing AI in Meta-analysis: Can domain-specific paper selection and data extraction be done effectively?

Autori: Madhuri Paul, Wopke van der Werf, Thomas Döring
Pubblicato in: 4th BioHackathon, de.NBI, 2026
Editore: 4th BioHackathon, de.NBI

Low-cost multispectral IoT sensors for in situ canopy reflectance measurements

Autori: Thomas, M., Mullens, V., Maes, A., Kenda, T., Defourny, P., Draye, X.
Pubblicato in: Phenet Annual Meeting, 2026
Editore: UCLouvain

Developing machine learning based models for soil parameters prediction and mapping using Vis-NIR spectroscopic data

Autori: Akos-Etele Csibi, Hans Sanden, Pavel Baykalov, Ruth Pereira, Anabel Cachada, Boris Rewald, David Perry
Pubblicato in: 2025
Editore: Copernicus GmbH
DOI: 10.5194/EGUSPHERE-EGU25-12259

Smart data for smart crops: Predicting performance with high-throughput phenotyping and modeling.

Autori: Martre, P
Pubblicato in: European Plant Phenotyping Symposium 2025, Bonn, Germany, July 13-14, 2025
Editore: EPPN

Leveraging on foundation deep neural models for individual apple tree segmentation in dense orchards via prompt engineering in RGB images

Autori: Herearii Metuarea, Julien Garnier, Kévin Guerif, Frédérique Didelot, François Laurens, Ludovic Bervas, Pejman Rasti, Helin Dutagaci, David Rousseau
Pubblicato in: 9th Workshop on Computer Vision in Plant Phenotyping and Agriculture (CVPPA), ECCV 2024 — Extended Abstracts, 2024
Editore: Springer Nature

Within-field Spatial Heterogeneity of Crop Growth from Multi-year Green Area Index Time Series Analysis

Autori: Kenda, T., Champagne, C., Draye, X., Defourny, P.
Pubblicato in: EO FOR AGRICULTURE UNDER PRESSURE, 2024
Editore: UCLouvain

Multi-frequency SAR time series for the detection of sowing events and early-season crop classification

Autori: Boland, B., Kenda, T., Bouchat, J., Defourny, P.
Pubblicato in: Living Planet Symposium 2025, 2025
Editore: Living Planet Symposium 2025

Phenotyping From Space: Evaluating Very High-Resolution Satellite-Based Trait Estimation in Winter Wheat Microplot Trials

Autori: Kenda, T., McAneny, R., Lopez-Lozano, R., Quesney, A., Weiss, M., Draye, X., Defourny, P.
Pubblicato in: European Plant Phenotyping Symposium, 2025
Editore: UCLouvain

Foreground-Aware Zero-Shot Plant Trait Segmentation in Trellised Crops Using Side View Monocular RGB Images

Autori: Abdoul Djalil Ousseini Hamza, Herearii Metuarea, Corentin Lothodé, Morgane Roth, Eric Duchêne, Lionel Ley, David Allétru, David Marc Rousseau
Pubblicato in: 11th Workshop on Computer Vision in Plant Phenotyping and Agriculture (CVPPA), ECCV 2026 — Extended Abstract, 2026
Editore: Open Review

A Layer-wise Analysis of Plant-Specialized Vision Transformers

Autori: Simon Ravé, Jean-Christophe Lombardo, Pejman Rasti, Alexis Joly, David Rousseau
Pubblicato in: RFIAP 2026 – Reconnaissance des Formes, Image, Apprentissage et Perception, 2026
Editore: University of Angers

OpenAlea 3.0: from ecophysiological models to community-driven use cases

Autori: Arsouze, Bauget, Besnier, Acker, Barillot, Bozonnet, Boudon, Boursiac, Bertheloot, Braud, Chelle, Delivoras, Durand, Fernandez, Gawinowski, Gérault, Godin, Maurel, Jullien, Louarn, Muller, Pallas, Pacitti, Perthame, Rees, Richard-Molard, Robert, Saudreau,
Pubblicato in: 11th International Conference on Functional-Structural Plant Models (FSPM), Numero 116-117
Editore: Christian Fournier, Christophe Pradal & Jean-Baptiste Durand.

Can plant traits explain the performance of an intercropping system? A wheat-pea field experiment

Autori: Timaeus Johannes, Weedon Odette, Finckh Maria
Pubblicato in: Mitteilungen der Gesellschaft für Pflanzenbauwissenschaften, 2023
Editore: Gesellschaft für Pflanzenbauwissenschaften (German Society for Crop Science).

Can wheat architectural organ traits be estimated from field data with a Plant Model approach ?

Autori: Besnier, Lopez Lozano, Fournier, Pradal
Pubblicato in: 11th International Conference on Functional-Structural Plant Models (FSPM), Numero 112-113, 2026
Editore: Christian Fournier, Christophe Pradal & Jean-Baptiste Durand.

Intercropping in Europe: a systematic mapping study of arable grain crops

Autori: Johannes Timaeus, Wopke van der Werf, Thomas Döring
Pubblicato in: "18th Congress of the European Society for Agronomy: ""Synergies for a resilient future: from knowledge to action"", Book of Abstracts (pp. 196–197). Rennes, France: The Couvent des Jacobins. Presenter: Madhuri Paul (mpaul1@uni-bonn.de).", 2024
Editore: 18th Congress of the European Society for Agronomy

Modeling Branching Processes Along Axes in Fruit Tree FSPMs: From Markov Chains to Transformers

Autori: Leclerc, Davenne, Costes, Durand, Beurier, Pradal, Boudon
Pubblicato in: 11th International Conference on Functional-Structural Plant Models (FSPM), Numero 71-72, 2026
Editore: Christian Fournier, Christophe Pradal & Jean-Baptiste Durand.

MPM: Mutual Pair Merging for Efficient Vision Transformers

Autori: Simon Ravé, Pejman Rasti, David Rousseau
Pubblicato in: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) Findings, Numero 2998–3008, 2026
Editore: IEEE / Computer Vision Foundation

How Merge-Tolerant Are Vision Transformers for Wheat Phenotyping?

Autori: Simon Ravé, Pejman Rasti, David Rousseau
Pubblicato in: 11th Workshop on Computer Vision in Plant Phenotyping and Agriculture (CVPPA), ECCV 2026, 2026
Editore: Springer

Multispectral Imagery for Forest Conditions Monitoring of a Pilot Watershed in the Vosges, France

Autori: Wijesingha, J. – Supervisors: P. Defourny, M. Thomas, T. Kenda
Pubblicato in: UCLouvain – Master's thesis
Editore: UCLouvain

Quelle plus-value agronomique pour la pratique culturale de l'intercropping en Wallonie ? Analyse statistique pluriannuelle fondée sur les données de télédétection et du SIGeC

Autori: Loriau, M.-H. – Supervisors: X. Draye, P. Defourny
Pubblicato in: UCLouvain – Master's thesis, 2025
Editore: UCLouvain

Are differences between intercropping and monoculture practices reflected in satellite imagery data ? The Wallonia case

Autori: Blondel, A. – Supervisors: X. Draye, P. Defourny
Pubblicato in: UCLouvain – Master's thesis, 2025
Editore: UCLouvain

Soil tillage detection performances using Sentinel time series and Copernicus product in Wallonia

Autori: Baladi, M. – Supervisors: P. Defourny, T. Kenda
Pubblicato in: UCLouvain – Master's thesis, 2025
Editore: UCLouvain

Premiers tests d'un système IoT autonome et low-cost pour le phénotypage en parcelle d'agriculteur

Autori: Evrard, C. – Supervisors: P. Defourny, X. Draye
Pubblicato in: UCLouvain – Master's thesis, 2025
Editore: UCLouvain

Calibration procedure and metrological evaluation of a low-cost, multispectral IoT sensor for canopy reflectance measurements

Autori: Mullens, V. – Supervisors: P. Defourny, X. Draye
Pubblicato in: UCLouvain – Master's thesis, 2026
Editore: UCLouvain

Near-real time GAI retrieval for yield-predictive stages in winter wheat in Wallonia using optical and radar Sentinel products

Autori: Guamán Viveros, A. – Supervisors: P. Defourny, T. Kenda, Q. Deffense
Pubblicato in: UCLouvain – Master's thesis, 2025
Editore: UCLouvain

MixINN: Accelerating plant breeding by combining mixed models and deep learning for interaction prediction

Autori: Aike Potze, Fred van Eeuwijk, Ioannis N. Athanasiadis
Pubblicato in: arXiv, 2026
Editore: arXiv
DOI: 10.48550/ARXIV.2605.04744

Soil in ecological & agroecological settings

Autori: Ilja M. Reiter
Pubblicato in: PHENET webinar 4 : Digging into the complexity of soil components, Numero 13.12.2024, 2024
Editore: Zenodo
DOI: 10.5281/ZENODO.15194201

Sustainable Funding in EMPHASIS as a Distributed Research Infrastructure

Autori: Sven Fahrner, Roland Pieruschka
Pubblicato in: Management for Professionals, Research Infrastructure Management, 2026
Editore: Springer Nature Switzerland
DOI: 10.1007/978-3-032-20373-1_9

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Risultati finali

Pubblicazioni

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