Characterizing ligand-protein interactions with a cryo-EM data-driven modeling approach

Projektinformationen

CryoLigate

ID Finanzhilfevereinbarung: 101107036

DOI

10.3030/101107036

EK-Unterschriftsdatum 21 April 2023

Startdatum 1 November 2023

Enddatum 31 Oktober 2025

Finanziert unter

• Marie Skłodowska-Curie Actions (MSCA)

Gesamtkosten

Keine Daten

EU-Beitrag

€ 222 727,68

Koordiniert durch

KUNGLIGA TEKNISKA HOEGSKOLAN
Sweden

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Leistungen

Documents, reports (2)

Communication, Dissemination & Exploitation Plan

The plan describes the planned measures to maximize the impact of the project, including the dissemination and exploitation measures that are planned, and the target group(s) addressed. Regarding communication measures and public engagement strategy, the aim is to inform and reach out to society and show the activities performed, and the use and the benefits the project will have for citizens.

Data Management Plan

Data Management Plan Description: The Data Management Plan describes the data management life cycle for all data sets that will be collected, processed or generated by the action. It is a document describing what data will be collected, processed or generated and following what methodology and standards, whether and how this data will be shared and/or made open, and how it will be curated and preserved.

Veröffentlichungen

Peer reviewed articles (6)

Resolving the conformational ensemble of a membrane protein by integrating small-angle scattering with AlphaFold

Autoren: Samuel Eriksson Lidbrink, Rebecca J. Howard, Nandan Haloi, Erik Lindahl
Veröffentlicht in: PLOS Computational Biology, Ausgabe 21(7): e1013187, 2025, ISSN 1553-7358
Herausgeber: PLOS
DOI: 10.1371/JOURNAL.PCBI.1013187

Structure and dynamics of differential ligand binding in the human ρ-type GABAA receptor

Autoren: John Cowgill, Chen Fan, Nandan Haloi, Victor Tobiasson, Yuxuan Zhuang, Rebecca J. Howard, Erik Lindahl
Veröffentlicht in: Neuron, 2023, ISSN 1097-4199
Herausgeber: Elsevier
DOI: 10.1016/j.neuron.2023.08.006

Discovering cryptic pocket opening and binding of a stimulant derivative in a vestibular site of the 5-HT _3A receptor

Autoren: Nandan Haloi, Emelia Karlsson, Marc Delarue, Rebecca J. Howard, Erik Lindahl
Veröffentlicht in: Science Advances, Ausgabe 11, 2025, ISSN 2375-2548
Herausgeber: American Association for the Advancement of Science (AAAS)
DOI: 10.1126/SCIADV.ADR0797

Interactive computational and experimental approaches improve the sensitivity of periplasmic binding protein-based nicotine biosensors for measurements in biofluids

Autoren: Nandan Haloi, Shan Huang, Aaron L Nichols, Eve J Fine, Nicholas J Friesenhahn, Christopher B Marotta, Dennis A Dougherty, Erik Lindahl, Rebecca J Howard, Stephen L Mayo, Henry A Lester
Veröffentlicht in: Protein Engineering, Design and Selection, 2024, ISSN 1741-0134
Herausgeber: oxford university press
DOI: 10.1093/protein/gzae003

Adaptive sampling–based structural prediction reveals opening of a GABA _A receptor through the αβ interface

Autoren: Nandan Haloi, Samuel Eriksson Lidbrink, Rebecca J. Howard, Erik Lindahl
Veröffentlicht in: Science Advances, Ausgabe 11, 2025, ISSN 2375-2548
Herausgeber: American Association for the Advancement of Science (AAAS)
DOI: 10.1126/sciadv.adq3788

Cryo-EM ligand building using AlphaFold3-like model and molecular dynamics

Autoren: Nandan Haloi, Rebecca J. Howard, Erik Lindahl
Veröffentlicht in: PLOS Computational Biology, Ausgabe 21(8): e1013367, 2025, ISSN 1553-7358
Herausgeber: plos
DOI: 10.1371/JOURNAL.PCBI.1013367