Early Microbial Evolution

Phylogenetic analyses with systematic taxon sampling show that mitochondria branch within Alphaproteobacteria

Autores: Lu Fan, Dingfeng Wu, Vadim Goremykin, Jing Xiao, Yanbing Xu, Sriram Garg, Chuanlun Zhang, William F. Martin, Ruixin Zhu
Publicado en: Nature Ecology & Evolution, Edición 4/9, 2020, Página(s) 1213-1219, ISSN 2397-334X
Editor: Springer Nature
DOI: 10.1038/s41559-020-1239-x

A spectrum of verticality across genes

Autores: Falk S. P. Nagies, Julia Brueckner, Fernando D. K. Tria, William F. Martin
Publicado en: PLOS Genetics, Edición 16/11, 2020, Página(s) e1009200, ISSN 1553-7404
Editor: Public Library of Science
DOI: 10.1371/journal.pgen.1009200

Older Than Genes: The Acetyl CoA Pathway and Origins

Autores: William F. Martin
Publicado en: Frontiers in Microbiology, Edición 11, 2020, Página(s) 21, ISSN 1664-302X
Editor: Frontiers Media
DOI: 10.3389/fmicb.2020.00817

On Being the Right Size as an Animal with Plastids

Autores: Cessa Rauch, Peter Jahns, Aloysius G. M. Tielens, Sven B. Gould, William F. Martin
Publicado en: Frontiers in Plant Science, Edición 8, 2017, Página(s) 1402, ISSN 1664-462X
Editor: Frontiers Media S. A.
DOI: 10.3389/fpls.2017.01402

Failure to Recover Major Events of Gene Flux in Real Biological Data Due to Method Misapplication

Autores: Nils Kapust, Shijulal Nelson-Sathi, Barbara Schönfeld, Einat Hazkani-Covo, David Bryant, Peter J Lockhart, Mayo Röttger, Joana C Xavier, William F Martin
Publicado en: Genome Biology and Evolution, Edición 10/5, 2018, Página(s) 1198-1209, ISSN 1759-6653
Editor: Oxford University Press
DOI: 10.1093/gbe/evy080

Eukaryote lateral gene transfer is Lamarckian

Autores: William F. Martin
Publicado en: Nature Ecology & Evolution, Edición 2/5, 2018, Página(s) 754-754, ISSN 2397-334X
Editor: Macmillan Publishers Limited, part of Springer Nature
DOI: 10.1038/s41559-018-0521-7

A physiological perspective on the origin and evolution of photosynthesis

Autores: William F Martin, Donald A Bryant, J Thomas Beatty
Publicado en: FEMS Microbiology Reviews, Edición 42/2, 2017, Página(s) 205-231, ISSN 1574-6976
Editor: Oxford University Press
DOI: 10.1093/femsre/fux056

Native metals, electron bifurcation, and CO 2 reduction in early biochemical evolution

Autores: Filipa L Sousa, Martina Preiner, William F Martin
Publicado en: Current Opinion in Microbiology, Edición 43, 2018, Página(s) 77-83, ISSN 1369-5274
Editor: Elsevier BV
DOI: 10.1016/j.mib.2017.12.010

Too Much Eukaryote LGT

Autores: William F. Martin
Publicado en: BioEssays, Edición 39/12, 2017, Página(s) 1700115, ISSN 0265-9247
Editor: John Wiley & Sons Inc.
DOI: 10.1002/bies.201700115

Protein Import and the Origin of Red Complex Plastids

Autores: Sven B. Gould, Uwe-G. Maier, William F. Martin
Publicado en: Current Biology, Edición 25/12, 2015, Página(s) R515-R521, ISSN 0960-9822
Editor: Cell Press
DOI: 10.1016/j.cub.2015.04.033

Endosymbiotic gene transfer from prokaryotic pangenomes: Inherited chimerism in eukaryotes

Autores: Chuan Ku, Shijulal Nelson-Sathi, Mayo Roettger, Sriram Garg, Einat Hazkani-Covo, William F. Martin
Publicado en: Proceedings of the National Academy of Sciences, Edición 112/33, 2015, Página(s) 10139-10146, ISSN 0027-8424
Editor: National Academy of Sciences
DOI: 10.1073/pnas.1421385112

Autocatalytic sets in E. coli metabolism

Autores: Filipa L Sousa, Wim Hordijk, Mike Steel, William F Martin
Publicado en: Journal of Systems Chemistry, Edición 6/1, 2015, ISSN 1759-2208
Editor: Chemistry Central
DOI: 10.1186/s13322-015-0009-7

Origins of major archaeal clades correspond to gene acquisitions from bacteria

Autores: Shijulal Nelson-Sathi, Filipa L. Sousa, Mayo Roettger, Nabor Lozada-Chávez, Thorsten Thiergart, Arnold Janssen, David Bryant, Giddy Landan, Peter Schönheit, Bettina Siebers, James O. McInerney, William F. Martin
Publicado en: Nature, Edición 517/7532, 2015, Página(s) 77-80, ISSN 0028-0836
Editor: Nature Publishing Group
DOI: 10.1038/nature13805

Unmiraculous facultative anaerobes (comment on DOI 10.1002/bies.201600174)

Autores: William F. Martin
Publicado en: BioEssays, Edición 39/6, 2017, Página(s) 1700041, ISSN 0265-9247
Editor: John Wiley & Sons Inc.
DOI: 10.1002/bies.201700041

Energy for two: New archaeal lineages and the origin of mitochondria

Autores: William F. Martin, Sinje Neukirchen, Verena Zimorski, Sven B. Gould, Filipa L. Sousa
Publicado en: BioEssays, Edición 38/9, 2016, Página(s) 850-856, ISSN 0265-9247
Editor: John Wiley & Sons Inc.
DOI: 10.1002/bies.201600089

The Origin of a Killer Revealed by Bronze Age Yersinia Genomes

Autores: Shijulal Nelson-Sathi, William F. Martin
Publicado en: Cell Host & Microbe, Edición 18/5, 2015, Página(s) 513-514, ISSN 1931-3128
Editor: Cell Press
DOI: 10.1016/j.chom.2015.10.016

The Ribofilm as a Concept for Life’s Origins

Autores: John A. Baross, William F. Martin
Publicado en: Cell, Edición 162/1, 2015, Página(s) 13-15, ISSN 0092-8674
Editor: Cell Press
DOI: 10.1016/j.cell.2015.06.038

Lipids Are the Preferred Substrate of the Protist Naegleria gruberi, Relative of a Human Brain Pathogen

Autores: Michiel L. Bexkens, Verena Zimorski, Maarten J. Sarink, Hans Wienk, Jos F. Brouwers, Johan F. De Jonckheere, William F. Martin, Fred R. Opperdoes, Jaap J. van Hellemond, Aloysius G.M. Tielens
Publicado en: Cell Reports, Edición 25/3, 2018, Página(s) 537-543.e3, ISSN 2211-1247
Editor: Cell Press
DOI: 10.1016/j.celrep.2018.09.055

Elusive data underlying debate at the prokaryote-eukaryote divide

Autores: Marie Gerlitz, Michael Knopp, Nils Kapust, Joana C. Xavier, William F. Martin
Publicado en: Biology Direct, Edición 13/1, 2018, ISSN 1745-6150
Editor: BioMed Central
DOI: 10.1186/s13062-018-0221-x

Serpentinization: Connecting Geochemistry, Ancient Metabolism and Industrial Hydrogenation

Autores: Martina Preiner, Joana Xavier, Filipa Sousa, Verena Zimorski, Anna Neubeck, Susan Lang, H. Greenwell, Karl Kleinermanns, Harun Tüysüz, Tom McCollom, Nils Holm, William Martin
Publicado en: Life, Edición 8/4, 2018, Página(s) 41, ISSN 2075-1729
Editor: Licensee MDPI
DOI: 10.3390/life8040041

The last universal common ancestor between ancient Earth chemistry and the onset of genetics

Autores: Madeline C. Weiss, Martina Preiner, Joana C. Xavier, Verena Zimorski, William F. Martin
Publicado en: PLOS Genetics, Edición 14/8, 2018, Página(s) e1007518, ISSN 1553-7404
Editor: Public Library of Science (United States)
DOI: 10.1371/journal.pgen.1007518

Something special about CO-dependent CO 2 fixation

Autores: Joana C. Xavier, Martina Preiner, William F. Martin
Publicado en: The FEBS Journal, Edición 285/22, 2018, Página(s) 4181-4195, ISSN 1742-464X
Editor: Blackwell Publishing Inc.
DOI: 10.1111/febs.14664

Origin and phylogenetic relationships of [4Fe–4S]‐containing O 2 sensors of bacteria

Autores: C. Barth, M. C. Weiss, M. Roettger, W. F. Martin, G. Unden
Publicado en: Environmental Microbiology, Edición 20/12, 2018, Página(s) 4567-4586, ISSN 1462-2912
Editor: Blackwell Publishing Inc.
DOI: 10.1111/1462-2920.14411

Mosaic mitochondrial-plastid insertions into the nuclear genome show evidence of both non-homologous end joining and homologous recombination

Autores: Shir Portugez, William F. Martin, Einat Hazkani-Covo
Publicado en: BMC Evolutionary Biology, Edición 18/1, 2018, ISSN 1471-2148
Editor: BioMed Central
DOI: 10.1186/s12862-018-1279-x

Oxygen Reductases in Alphaproteobacterial Genomes: Physiological Evolution From Low to High Oxygen Environments

Autores: Mauro Degli Esposti, Marek Mentel, William Martin, Filipa L. Sousa
Publicado en: Frontiers in Microbiology, Edición 10, 2019, ISSN 1664-302X
Editor: Frontiers Media
DOI: 10.3389/fmicb.2019.00499

Energy metabolism in anaerobic eukaryotes and Earth's late oxygenation

Autores: Verena Zimorski, Marek Mentel, Aloysius G.M. Tielens, William F. Martin
Publicado en: Free Radical Biology and Medicine, Edición 140, 2019, Página(s) 279-294, ISSN 0891-5849
Editor: Elsevier BV
DOI: 10.1016/j.freeradbiomed.2019.03.030

Archaeal Histone Contributions to the Origin of Eukaryotes

Autores: Clifford F. Brunk, William F. Martin
Publicado en: Trends in Microbiology, Edición 27/8, 2019, Página(s) 703-714, ISSN 0966-842X
Editor: Elsevier BV
DOI: 10.1016/j.tim.2019.04.002

Carbon–Metal Bonds: Rare and Primordial in Metabolism

Autores: William F. Martin
Publicado en: Trends in Biochemical Sciences, Edición 44/9, 2019, Página(s) 807-818, ISSN 0968-0004
Editor: Elsevier BV
DOI: 10.1016/j.tibs.2019.04.010

Adaptation to life on land at high O 2 via transition from ferredoxin-to NADH-dependent redox balance

Autores: S. B. Gould, S. G. Garg, M. Handrich, S. Nelson-Sathi, N. Gruenheit, A. G. M. Tielens, W. F. Martin
Publicado en: Proceedings of the Royal Society B: Biological Sciences, Edición 286/1909, 2019, Página(s) 20191491, ISSN 0962-8452
Editor: Royal Society of London
DOI: 10.1098/rspb.2019.1491

Nitrogenase Inhibition Limited Oxygenation of Earth’s Proterozoic Atmosphere

Autores: John F. Allen, Brenda Thake, William F. Martin
Publicado en: Trends in Plant Science, Edición 24/11, 2019, Página(s) 1022-1031, ISSN 1360-1385
Editor: Elsevier BV
DOI: 10.1016/j.tplants.2019.07.007

Catalysts, autocatalysis and the origin of metabolism

Autores: Martina Preiner, Joana C. Xavier, Andrey do Nascimento Vieira, Karl Kleinermanns, John F. Allen, William F. Martin
Publicado en: Interface Focus, Edición 9/6, 2019, Página(s) 20190072, ISSN 2042-8898
Editor: Royal Society Publishing
DOI: 10.1098/rsfs.2019.0072

A hydrogen-dependent geochemical analogue of primordial carbon and energy metabolism

Autores: Martina Preiner, Kensuke Igarashi, Kamila B. Muchowska, Mingquan Yu, Sreejith J. Varma, Karl Kleinermanns, Masaru K. Nobu, Yoichi Kamagata, Harun Tüysüz, Joseph Moran, William F. Martin
Publicado en: Nature Ecology & Evolution, Edición 4/4, 2020, Página(s) 534-542, ISSN 2397-334X
Editor: Springer Nature Limited
DOI: 10.1038/s41559-020-1125-6

Bacterial Genes Outnumber Archaeal Genes in Eukaryotic Genomes

Autores: Julia Brueckner, William F Martin
Publicado en: Genome Biology and Evolution, Edición 12/4, 2020, Página(s) 282-292, ISSN 1759-6653
Editor: Oxford University Press
DOI: 10.1093/gbe/evaa047

Autocatalytic chemical networks at the origin of metabolism

Autores: Joana C. Xavier, Wim Hordijk, Stuart Kauffman, Mike Steel, William F. Martin
Publicado en: Proceedings of the Royal Society B: Biological Sciences, Edición 287/1922, 2020, Página(s) 20192377, ISSN 0962-8452
Editor: Royal Society of London
DOI: 10.1098/rspb.2019.2377

The ambivalent role of water at the origins of life

Autores: Andrey Nascimento Vieira, Karl Kleinermanns, William F. Martin, Martina Preiner
Publicado en: FEBS Letters, 2020, ISSN 0014-5793
Editor: Elsevier BV
DOI: 10.1002/1873-3468.13815

Endosymbiotic origin and differential loss of eukaryotic genes

Autores: Chuan Ku, Shijulal Nelson-Sathi, Mayo Roettger, Filipa L. Sousa, Peter J. Lockhart, David Bryant, Einat Hazkani-Covo, James O. McInerney, Giddy Landan, William F. Martin
Publicado en: Nature, Edición 524/7566, 2015, Página(s) 427-432, ISSN 0028-0836
Editor: Nature Publishing Group
DOI: 10.1038/nature14963

The Physiology of Phagocytosis in the Context of Mitochondrial Origin

Autores: William F. Martin, Aloysius G. M. Tielens, Marek Mentel, Sriram G. Garg, Sven B. Gould
Publicado en: Microbiology and Molecular Biology Reviews, Edición 81/3, 2017, Página(s) e00008-17, ISSN 1092-2172
Editor: American Society for Microbiology
DOI: 10.1128/MMBR.00008-17

Quantifying the number of independent organelle DNA insertions in genome evolution and human health

Autores: Einat Hazkani-Covo, William F. Martin
Publicado en: Genome Biology and Evolution, Edición 9, 2017, Página(s) 1190–1203, ISSN 1759-6653
Editor: Oxford University Press
DOI: 10.1093/gbe/evx078

Bacterial Vesicle Secretion and the Evolutionary Origin of the Eukaryotic Endomembrane System

Autores: Sven B. Gould, Sriram G. Garg, William F. Martin
Publicado en: Trends in Microbiology, Edición 24/7, 2016, Página(s) 525-534, ISSN 0966-842X
Editor: Elsevier BV
DOI: 10.1016/j.tim.2016.03.005

A natural barrier to lateral gene transfer from prokaryotes to eukaryotes revealed from genomes: the 70 % rule

Autores: Chuan Ku, William F. Martin
Publicado en: BMC Biology, Edición 14/1, 2016, ISSN 1741-7007
Editor: BioMed Central
DOI: 10.1186/s12915-016-0315-9

Endosymbiotic theories for eukaryote origin

Autores: William F. Martin, Sriram Garg, Verena Zimorski
Publicado en: Philosophical Transactions of the Royal Society B: Biological Sciences, Edición 370/1678, 2015, Página(s) 20140330, ISSN 0962-8436
Editor: Royal Society of London
DOI: 10.1098/rstb.2014.0330

Lokiarchaeon is hydrogen dependent

Autores: Filipa L. Sousa, Sinje Neukirchen, John F. Allen, Nick Lane, William F. Martin
Publicado en: Nature Microbiology, Edición 1/5, 2016, Página(s) 16034, ISSN 2058-5276
Editor: Macmillan Publishers Limited, part of Springer Nature.
DOI: 10.1038/nmicrobiol.2016.34

Late Mitochondrial Origin Is an Artifact

Autores: William F. Martin, Mayo Roettger, Chuan Ku, Sriram G. Garg, Shijulal Nelson-Sathi, Giddy Landan
Publicado en: Genome Biology and Evolution, Edición 9/2, 2017, Página(s) 373-379, ISSN 1759-6653
Editor: Oxford University Press
DOI: 10.1093/gbe/evx027

Conservation of Transit Peptide-Independent Protein Import into the Mitochondrial and Hydrogenosomal Matrix

Autores: Sriram Garg, Jan Stölting, Verena Zimorski, Petr Rada, Jan Tachezy, William F. Martin, Sven B. Gould
Publicado en: Genome Biology and Evolution, Edición 7/9, 2015, Página(s) 2716-2726, ISSN 1759-6653
Editor: Oxford University Press
DOI: 10.1093/gbe/evv175

Mitochondria, the Cell Cycle, and the Origin of Sex via a Syncytial Eukaryote Common Ancestor

Autores: Sriram G. Garg, William F. Martin
Publicado en: Genome Biology and Evolution, Edición 8/6, 2016, Página(s) 1950-1970, ISSN 1759-6653
Editor: Oxford University Press
DOI: 10.1093/gbe/evw136

One step beyond a ribosome: The ancient anaerobic core

Autores: Filipa L. Sousa, Shijulal Nelson-Sathi, William F. Martin
Publicado en: Biochimica et Biophysica Acta (BBA) - Bioenergetics, Edición 1857/8, 2016, Página(s) 1027-1038, ISSN 0005-2728
Editor: Elsevier BV
DOI: 10.1016/j.bbabio.2016.04.284

The physiology and habitat of the last universal common ancestor

Autores: Madeline C. Weiss, Filipa L. Sousa, Natalia Mrnjavac, Sinje Neukirchen, Mayo Roettger, Shijulal Nelson-Sathi, William F. Martin
Publicado en: Nature Microbiology, Edición 1/9, 2016, Página(s) 16116, ISSN 2058-5276
Editor: Macmillan Publishers Limited, part of Springer Nature.
DOI: 10.1038/nmicrobiol.2016.116

Early Microbial Evolution: The Age of Anaerobes

Autores: William F. Martin, Filipa L. Sousa
Publicado en: Cold Spring Harbor Perspectives in Biology, Edición 8/2, 2016, Página(s) a018127, ISSN 1943-0264
Editor: Cold Spring Harbor Laboratory Press
DOI: 10.1101/cshperspect.a018127

Physiology, phylogeny, early evolution, and GAPDH

Autores: William F. Martin, Rüdiger Cerff
Publicado en: Protoplasma, Edición 254, 2017, Página(s) 1823–1834, ISSN 0033-183X
Editor: Springer Verlag
DOI: 10.1007/s00709-017-1095-y

Anomalous phylogenetic behavior of ribosomal proteins in metagenome assembled asgard archaea

Autores: Sriram G Garg, Nils Kapust, Weili Lin, Michael Knopp, Fernando D K Tria, Shijulal Nelson-Sathi, Sven B Gould, Lu Fan, Ruixin Zhu, Chuanlun Zhang, William F Martin
Publicado en: Genome Biology and Evolution, 2020, ISSN 1759-6653
Editor: Oxford University Press
DOI: 10.1093/gbe/evaa238

Brain energy rescue: an emerging therapeutic concept for neurodegenerative disorders of ageing

Autores: Stephen C. Cunnane, Eugenia Trushina, Cecilie Morland, Alessandro Prigione, Gemma Casadesus, Zane B. Andrews, M. Flint Beal, Linda H. Bergersen, Roberta D. Brinton, Suzanne de la Monte, Anne Eckert, Jenni Harvey, Ross Jeggo, Jack H. Jhamandas, Oliver Kann, Clothide Mannoury la Cour, William F. Martin, Gilles Mithieux, Paula I. Moreira, Michael P. Murphy, Klaus-Armin Nave, Tal Nuriel, Stéphane H.
Publicado en: Nature Reviews Drug Discovery, Edición 19/9, 2020, Página(s) 609-633, ISSN 1474-1776
Editor: Nature Publishing Group
DOI: 10.1038/s41573-020-0072-x

Gene duplications trace mitochondria to the onset of eukaryote complexity

Autores: Fernando D. K. Tria; Julia Brückner; Josip Skejo; Joana C. Xavier; Verena Zimorski; Sven B. Gould; Sriram G. Garg; William F. Martin
Publicado en: biorxiv, Edición 1, 2019
Editor: Cold Spring Harbor Laboratories
DOI: 10.1101/781211

The theory of two plasma lineages as the basis of symbiogenesis, a new principle for the origin of organisms

Autores: Klaus V.Kowallik, William F.Martin
Publicado en: Biosystems, Edición 104281, 2020, ISSN 0303-2647
Editor: Elsevier BV
DOI: 10.1016/j.biosystems.2020.104281

Symbiogenesis, gradualism, and mitochondrial energy in eukaryote origin

Autores: William Martin
Publicado en: Periodicum Biologorum, Edición 119/3, 2017, Página(s) 141-158, ISSN 0031-5362
Editor: Hrvatsko Prirodoslovno Drustvo/Croation Society of Natural Sciences
DOI: 10.18054/pb.v119i3.5694

Asking endosymbionts to do an enzyme’s job

Autores: Sriram G. Garg, William F. Martin
Publicado en: Proceedings of the National Academy of Sciences, Edición 115/20, 2018, Página(s) E4543-E4544, ISSN 0027-8424
Editor: National Academy of Sciences
DOI: 10.1073/pnas.1804397115

Why Have Organelles Retained Genomes?

Autores: John F. Allen, William F. Martin
Publicado en: Cell Systems, Edición 2/2, 2016, Página(s) 70-72, ISSN 2405-4712
Editor: Elsevier
DOI: 10.1016/j.cels.2016.02.007

Physiology, phylogeny, and the energetic roots of life

Autores: William F. Martin
Publicado en: Periodicum Biologorum, Edición 118/4, 2017, ISSN 0031-5362
Editor: Hrvatsko Prirodoslovno Drustvo/Croation Society of Natural Sciences
DOI: 10.18054/pb.v118i4.4737

Endosymbiotic Theory

Autores: S. Garg, V. Zimorski, W.F. Martin
Publicado en: The Encyclopedia of Evolutionary Biology, Vol. 1, 2016, Página(s) 511-517
Editor: Academic Press
DOI: 10.1016/b978-0-12-800049-6.00191-8

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