Early Microbial Evolution

Phylogenetic analyses with systematic taxon sampling show that mitochondria branch within Alphaproteobacteria

Autorzy: Lu Fan, Dingfeng Wu, Vadim Goremykin, Jing Xiao, Yanbing Xu, Sriram Garg, Chuanlun Zhang, William F. Martin, Ruixin Zhu
Opublikowane w: Nature Ecology & Evolution, Numer 4/9, 2020, Strona(/y) 1213-1219, ISSN 2397-334X
Wydawca: Springer Nature
DOI: 10.1038/s41559-020-1239-x

A spectrum of verticality across genes

Autorzy: Falk S. P. Nagies, Julia Brueckner, Fernando D. K. Tria, William F. Martin
Opublikowane w: PLOS Genetics, Numer 16/11, 2020, Strona(/y) e1009200, ISSN 1553-7404
Wydawca: Public Library of Science
DOI: 10.1371/journal.pgen.1009200

Older Than Genes: The Acetyl CoA Pathway and Origins

Autorzy: William F. Martin
Opublikowane w: Frontiers in Microbiology, Numer 11, 2020, Strona(/y) 21, ISSN 1664-302X
Wydawca: Frontiers Media
DOI: 10.3389/fmicb.2020.00817

On Being the Right Size as an Animal with Plastids

Autorzy: Cessa Rauch, Peter Jahns, Aloysius G. M. Tielens, Sven B. Gould, William F. Martin
Opublikowane w: Frontiers in Plant Science, Numer 8, 2017, Strona(/y) 1402, ISSN 1664-462X
Wydawca: Frontiers Media S. A.
DOI: 10.3389/fpls.2017.01402

Failure to Recover Major Events of Gene Flux in Real Biological Data Due to Method Misapplication

Autorzy: Nils Kapust, Shijulal Nelson-Sathi, Barbara Schönfeld, Einat Hazkani-Covo, David Bryant, Peter J Lockhart, Mayo Röttger, Joana C Xavier, William F Martin
Opublikowane w: Genome Biology and Evolution, Numer 10/5, 2018, Strona(/y) 1198-1209, ISSN 1759-6653
Wydawca: Oxford University Press
DOI: 10.1093/gbe/evy080

Eukaryote lateral gene transfer is Lamarckian

Autorzy: William F. Martin
Opublikowane w: Nature Ecology & Evolution, Numer 2/5, 2018, Strona(/y) 754-754, ISSN 2397-334X
Wydawca: Macmillan Publishers Limited, part of Springer Nature
DOI: 10.1038/s41559-018-0521-7

A physiological perspective on the origin and evolution of photosynthesis

Autorzy: William F Martin, Donald A Bryant, J Thomas Beatty
Opublikowane w: FEMS Microbiology Reviews, Numer 42/2, 2017, Strona(/y) 205-231, ISSN 1574-6976
Wydawca: Oxford University Press
DOI: 10.1093/femsre/fux056

Native metals, electron bifurcation, and CO 2 reduction in early biochemical evolution

Autorzy: Filipa L Sousa, Martina Preiner, William F Martin
Opublikowane w: Current Opinion in Microbiology, Numer 43, 2018, Strona(/y) 77-83, ISSN 1369-5274
Wydawca: Elsevier BV
DOI: 10.1016/j.mib.2017.12.010

Too Much Eukaryote LGT

Autorzy: William F. Martin
Opublikowane w: BioEssays, Numer 39/12, 2017, Strona(/y) 1700115, ISSN 0265-9247
Wydawca: John Wiley & Sons Inc.
DOI: 10.1002/bies.201700115

Protein Import and the Origin of Red Complex Plastids

Autorzy: Sven B. Gould, Uwe-G. Maier, William F. Martin
Opublikowane w: Current Biology, Numer 25/12, 2015, Strona(/y) R515-R521, ISSN 0960-9822
Wydawca: Cell Press
DOI: 10.1016/j.cub.2015.04.033

Endosymbiotic gene transfer from prokaryotic pangenomes: Inherited chimerism in eukaryotes

Autorzy: Chuan Ku, Shijulal Nelson-Sathi, Mayo Roettger, Sriram Garg, Einat Hazkani-Covo, William F. Martin
Opublikowane w: Proceedings of the National Academy of Sciences, Numer 112/33, 2015, Strona(/y) 10139-10146, ISSN 0027-8424
Wydawca: National Academy of Sciences
DOI: 10.1073/pnas.1421385112

Autocatalytic sets in E. coli metabolism

Autorzy: Filipa L Sousa, Wim Hordijk, Mike Steel, William F Martin
Opublikowane w: Journal of Systems Chemistry, Numer 6/1, 2015, ISSN 1759-2208
Wydawca: Chemistry Central
DOI: 10.1186/s13322-015-0009-7

Origins of major archaeal clades correspond to gene acquisitions from bacteria

Autorzy: Shijulal Nelson-Sathi, Filipa L. Sousa, Mayo Roettger, Nabor Lozada-Chávez, Thorsten Thiergart, Arnold Janssen, David Bryant, Giddy Landan, Peter Schönheit, Bettina Siebers, James O. McInerney, William F. Martin
Opublikowane w: Nature, Numer 517/7532, 2015, Strona(/y) 77-80, ISSN 0028-0836
Wydawca: Nature Publishing Group
DOI: 10.1038/nature13805

Unmiraculous facultative anaerobes (comment on DOI 10.1002/bies.201600174)

Autorzy: William F. Martin
Opublikowane w: BioEssays, Numer 39/6, 2017, Strona(/y) 1700041, ISSN 0265-9247
Wydawca: John Wiley & Sons Inc.
DOI: 10.1002/bies.201700041

Energy for two: New archaeal lineages and the origin of mitochondria

Autorzy: William F. Martin, Sinje Neukirchen, Verena Zimorski, Sven B. Gould, Filipa L. Sousa
Opublikowane w: BioEssays, Numer 38/9, 2016, Strona(/y) 850-856, ISSN 0265-9247
Wydawca: John Wiley & Sons Inc.
DOI: 10.1002/bies.201600089

The Origin of a Killer Revealed by Bronze Age Yersinia Genomes

Autorzy: Shijulal Nelson-Sathi, William F. Martin
Opublikowane w: Cell Host & Microbe, Numer 18/5, 2015, Strona(/y) 513-514, ISSN 1931-3128
Wydawca: Cell Press
DOI: 10.1016/j.chom.2015.10.016

The Ribofilm as a Concept for Life’s Origins

Autorzy: John A. Baross, William F. Martin
Opublikowane w: Cell, Numer 162/1, 2015, Strona(/y) 13-15, ISSN 0092-8674
Wydawca: Cell Press
DOI: 10.1016/j.cell.2015.06.038

Lipids Are the Preferred Substrate of the Protist Naegleria gruberi, Relative of a Human Brain Pathogen

Autorzy: Michiel L. Bexkens, Verena Zimorski, Maarten J. Sarink, Hans Wienk, Jos F. Brouwers, Johan F. De Jonckheere, William F. Martin, Fred R. Opperdoes, Jaap J. van Hellemond, Aloysius G.M. Tielens
Opublikowane w: Cell Reports, Numer 25/3, 2018, Strona(/y) 537-543.e3, ISSN 2211-1247
Wydawca: Cell Press
DOI: 10.1016/j.celrep.2018.09.055

Elusive data underlying debate at the prokaryote-eukaryote divide

Autorzy: Marie Gerlitz, Michael Knopp, Nils Kapust, Joana C. Xavier, William F. Martin
Opublikowane w: Biology Direct, Numer 13/1, 2018, ISSN 1745-6150
Wydawca: BioMed Central
DOI: 10.1186/s13062-018-0221-x

Serpentinization: Connecting Geochemistry, Ancient Metabolism and Industrial Hydrogenation

Autorzy: Martina Preiner, Joana Xavier, Filipa Sousa, Verena Zimorski, Anna Neubeck, Susan Lang, H. Greenwell, Karl Kleinermanns, Harun Tüysüz, Tom McCollom, Nils Holm, William Martin
Opublikowane w: Life, Numer 8/4, 2018, Strona(/y) 41, ISSN 2075-1729
Wydawca: Licensee MDPI
DOI: 10.3390/life8040041

The last universal common ancestor between ancient Earth chemistry and the onset of genetics

Autorzy: Madeline C. Weiss, Martina Preiner, Joana C. Xavier, Verena Zimorski, William F. Martin
Opublikowane w: PLOS Genetics, Numer 14/8, 2018, Strona(/y) e1007518, ISSN 1553-7404
Wydawca: Public Library of Science (United States)
DOI: 10.1371/journal.pgen.1007518

Something special about CO-dependent CO 2 fixation

Autorzy: Joana C. Xavier, Martina Preiner, William F. Martin
Opublikowane w: The FEBS Journal, Numer 285/22, 2018, Strona(/y) 4181-4195, ISSN 1742-464X
Wydawca: Blackwell Publishing Inc.
DOI: 10.1111/febs.14664

Origin and phylogenetic relationships of [4Fe–4S]‐containing O 2 sensors of bacteria

Autorzy: C. Barth, M. C. Weiss, M. Roettger, W. F. Martin, G. Unden
Opublikowane w: Environmental Microbiology, Numer 20/12, 2018, Strona(/y) 4567-4586, ISSN 1462-2912
Wydawca: Blackwell Publishing Inc.
DOI: 10.1111/1462-2920.14411

Mosaic mitochondrial-plastid insertions into the nuclear genome show evidence of both non-homologous end joining and homologous recombination

Autorzy: Shir Portugez, William F. Martin, Einat Hazkani-Covo
Opublikowane w: BMC Evolutionary Biology, Numer 18/1, 2018, ISSN 1471-2148
Wydawca: BioMed Central
DOI: 10.1186/s12862-018-1279-x

Oxygen Reductases in Alphaproteobacterial Genomes: Physiological Evolution From Low to High Oxygen Environments

Autorzy: Mauro Degli Esposti, Marek Mentel, William Martin, Filipa L. Sousa
Opublikowane w: Frontiers in Microbiology, Numer 10, 2019, ISSN 1664-302X
Wydawca: Frontiers Media
DOI: 10.3389/fmicb.2019.00499

Energy metabolism in anaerobic eukaryotes and Earth's late oxygenation

Autorzy: Verena Zimorski, Marek Mentel, Aloysius G.M. Tielens, William F. Martin
Opublikowane w: Free Radical Biology and Medicine, Numer 140, 2019, Strona(/y) 279-294, ISSN 0891-5849
Wydawca: Elsevier BV
DOI: 10.1016/j.freeradbiomed.2019.03.030

Archaeal Histone Contributions to the Origin of Eukaryotes

Autorzy: Clifford F. Brunk, William F. Martin
Opublikowane w: Trends in Microbiology, Numer 27/8, 2019, Strona(/y) 703-714, ISSN 0966-842X
Wydawca: Elsevier BV
DOI: 10.1016/j.tim.2019.04.002

Carbon–Metal Bonds: Rare and Primordial in Metabolism

Autorzy: William F. Martin
Opublikowane w: Trends in Biochemical Sciences, Numer 44/9, 2019, Strona(/y) 807-818, ISSN 0968-0004
Wydawca: Elsevier BV
DOI: 10.1016/j.tibs.2019.04.010

Adaptation to life on land at high O 2 via transition from ferredoxin-to NADH-dependent redox balance

Autorzy: S. B. Gould, S. G. Garg, M. Handrich, S. Nelson-Sathi, N. Gruenheit, A. G. M. Tielens, W. F. Martin
Opublikowane w: Proceedings of the Royal Society B: Biological Sciences, Numer 286/1909, 2019, Strona(/y) 20191491, ISSN 0962-8452
Wydawca: Royal Society of London
DOI: 10.1098/rspb.2019.1491

Nitrogenase Inhibition Limited Oxygenation of Earth’s Proterozoic Atmosphere

Autorzy: John F. Allen, Brenda Thake, William F. Martin
Opublikowane w: Trends in Plant Science, Numer 24/11, 2019, Strona(/y) 1022-1031, ISSN 1360-1385
Wydawca: Elsevier BV
DOI: 10.1016/j.tplants.2019.07.007

Catalysts, autocatalysis and the origin of metabolism

Autorzy: Martina Preiner, Joana C. Xavier, Andrey do Nascimento Vieira, Karl Kleinermanns, John F. Allen, William F. Martin
Opublikowane w: Interface Focus, Numer 9/6, 2019, Strona(/y) 20190072, ISSN 2042-8898
Wydawca: Royal Society Publishing
DOI: 10.1098/rsfs.2019.0072

A hydrogen-dependent geochemical analogue of primordial carbon and energy metabolism

Autorzy: Martina Preiner, Kensuke Igarashi, Kamila B. Muchowska, Mingquan Yu, Sreejith J. Varma, Karl Kleinermanns, Masaru K. Nobu, Yoichi Kamagata, Harun Tüysüz, Joseph Moran, William F. Martin
Opublikowane w: Nature Ecology & Evolution, Numer 4/4, 2020, Strona(/y) 534-542, ISSN 2397-334X
Wydawca: Springer Nature Limited
DOI: 10.1038/s41559-020-1125-6

Bacterial Genes Outnumber Archaeal Genes in Eukaryotic Genomes

Autorzy: Julia Brueckner, William F Martin
Opublikowane w: Genome Biology and Evolution, Numer 12/4, 2020, Strona(/y) 282-292, ISSN 1759-6653
Wydawca: Oxford University Press
DOI: 10.1093/gbe/evaa047

Autocatalytic chemical networks at the origin of metabolism

Autorzy: Joana C. Xavier, Wim Hordijk, Stuart Kauffman, Mike Steel, William F. Martin
Opublikowane w: Proceedings of the Royal Society B: Biological Sciences, Numer 287/1922, 2020, Strona(/y) 20192377, ISSN 0962-8452
Wydawca: Royal Society of London
DOI: 10.1098/rspb.2019.2377

The ambivalent role of water at the origins of life

Autorzy: Andrey Nascimento Vieira, Karl Kleinermanns, William F. Martin, Martina Preiner
Opublikowane w: FEBS Letters, 2020, ISSN 0014-5793
Wydawca: Elsevier BV
DOI: 10.1002/1873-3468.13815

Endosymbiotic origin and differential loss of eukaryotic genes

Autorzy: Chuan Ku, Shijulal Nelson-Sathi, Mayo Roettger, Filipa L. Sousa, Peter J. Lockhart, David Bryant, Einat Hazkani-Covo, James O. McInerney, Giddy Landan, William F. Martin
Opublikowane w: Nature, Numer 524/7566, 2015, Strona(/y) 427-432, ISSN 0028-0836
Wydawca: Nature Publishing Group
DOI: 10.1038/nature14963

The Physiology of Phagocytosis in the Context of Mitochondrial Origin

Autorzy: William F. Martin, Aloysius G. M. Tielens, Marek Mentel, Sriram G. Garg, Sven B. Gould
Opublikowane w: Microbiology and Molecular Biology Reviews, Numer 81/3, 2017, Strona(/y) e00008-17, ISSN 1092-2172
Wydawca: American Society for Microbiology
DOI: 10.1128/MMBR.00008-17

Quantifying the number of independent organelle DNA insertions in genome evolution and human health

Autorzy: Einat Hazkani-Covo, William F. Martin
Opublikowane w: Genome Biology and Evolution, Numer 9, 2017, Strona(/y) 1190–1203, ISSN 1759-6653
Wydawca: Oxford University Press
DOI: 10.1093/gbe/evx078

Bacterial Vesicle Secretion and the Evolutionary Origin of the Eukaryotic Endomembrane System

Autorzy: Sven B. Gould, Sriram G. Garg, William F. Martin
Opublikowane w: Trends in Microbiology, Numer 24/7, 2016, Strona(/y) 525-534, ISSN 0966-842X
Wydawca: Elsevier BV
DOI: 10.1016/j.tim.2016.03.005

A natural barrier to lateral gene transfer from prokaryotes to eukaryotes revealed from genomes: the 70 % rule

Autorzy: Chuan Ku, William F. Martin
Opublikowane w: BMC Biology, Numer 14/1, 2016, ISSN 1741-7007
Wydawca: BioMed Central
DOI: 10.1186/s12915-016-0315-9

Endosymbiotic theories for eukaryote origin

Autorzy: William F. Martin, Sriram Garg, Verena Zimorski
Opublikowane w: Philosophical Transactions of the Royal Society B: Biological Sciences, Numer 370/1678, 2015, Strona(/y) 20140330, ISSN 0962-8436
Wydawca: Royal Society of London
DOI: 10.1098/rstb.2014.0330

Lokiarchaeon is hydrogen dependent

Autorzy: Filipa L. Sousa, Sinje Neukirchen, John F. Allen, Nick Lane, William F. Martin
Opublikowane w: Nature Microbiology, Numer 1/5, 2016, Strona(/y) 16034, ISSN 2058-5276
Wydawca: Macmillan Publishers Limited, part of Springer Nature.
DOI: 10.1038/nmicrobiol.2016.34

Late Mitochondrial Origin Is an Artifact

Autorzy: William F. Martin, Mayo Roettger, Chuan Ku, Sriram G. Garg, Shijulal Nelson-Sathi, Giddy Landan
Opublikowane w: Genome Biology and Evolution, Numer 9/2, 2017, Strona(/y) 373-379, ISSN 1759-6653
Wydawca: Oxford University Press
DOI: 10.1093/gbe/evx027

Conservation of Transit Peptide-Independent Protein Import into the Mitochondrial and Hydrogenosomal Matrix

Autorzy: Sriram Garg, Jan Stölting, Verena Zimorski, Petr Rada, Jan Tachezy, William F. Martin, Sven B. Gould
Opublikowane w: Genome Biology and Evolution, Numer 7/9, 2015, Strona(/y) 2716-2726, ISSN 1759-6653
Wydawca: Oxford University Press
DOI: 10.1093/gbe/evv175

Mitochondria, the Cell Cycle, and the Origin of Sex via a Syncytial Eukaryote Common Ancestor

Autorzy: Sriram G. Garg, William F. Martin
Opublikowane w: Genome Biology and Evolution, Numer 8/6, 2016, Strona(/y) 1950-1970, ISSN 1759-6653
Wydawca: Oxford University Press
DOI: 10.1093/gbe/evw136

One step beyond a ribosome: The ancient anaerobic core

Autorzy: Filipa L. Sousa, Shijulal Nelson-Sathi, William F. Martin
Opublikowane w: Biochimica et Biophysica Acta (BBA) - Bioenergetics, Numer 1857/8, 2016, Strona(/y) 1027-1038, ISSN 0005-2728
Wydawca: Elsevier BV
DOI: 10.1016/j.bbabio.2016.04.284

The physiology and habitat of the last universal common ancestor

Autorzy: Madeline C. Weiss, Filipa L. Sousa, Natalia Mrnjavac, Sinje Neukirchen, Mayo Roettger, Shijulal Nelson-Sathi, William F. Martin
Opublikowane w: Nature Microbiology, Numer 1/9, 2016, Strona(/y) 16116, ISSN 2058-5276
Wydawca: Macmillan Publishers Limited, part of Springer Nature.
DOI: 10.1038/nmicrobiol.2016.116

Early Microbial Evolution: The Age of Anaerobes

Autorzy: William F. Martin, Filipa L. Sousa
Opublikowane w: Cold Spring Harbor Perspectives in Biology, Numer 8/2, 2016, Strona(/y) a018127, ISSN 1943-0264
Wydawca: Cold Spring Harbor Laboratory Press
DOI: 10.1101/cshperspect.a018127

Physiology, phylogeny, early evolution, and GAPDH

Autorzy: William F. Martin, Rüdiger Cerff
Opublikowane w: Protoplasma, Numer 254, 2017, Strona(/y) 1823–1834, ISSN 0033-183X
Wydawca: Springer Verlag
DOI: 10.1007/s00709-017-1095-y

Anomalous phylogenetic behavior of ribosomal proteins in metagenome assembled asgard archaea

Autorzy: Sriram G Garg, Nils Kapust, Weili Lin, Michael Knopp, Fernando D K Tria, Shijulal Nelson-Sathi, Sven B Gould, Lu Fan, Ruixin Zhu, Chuanlun Zhang, William F Martin
Opublikowane w: Genome Biology and Evolution, 2020, ISSN 1759-6653
Wydawca: Oxford University Press
DOI: 10.1093/gbe/evaa238

Brain energy rescue: an emerging therapeutic concept for neurodegenerative disorders of ageing

Autorzy: Stephen C. Cunnane, Eugenia Trushina, Cecilie Morland, Alessandro Prigione, Gemma Casadesus, Zane B. Andrews, M. Flint Beal, Linda H. Bergersen, Roberta D. Brinton, Suzanne de la Monte, Anne Eckert, Jenni Harvey, Ross Jeggo, Jack H. Jhamandas, Oliver Kann, Clothide Mannoury la Cour, William F. Martin, Gilles Mithieux, Paula I. Moreira, Michael P. Murphy, Klaus-Armin Nave, Tal Nuriel, Stéphane H.
Opublikowane w: Nature Reviews Drug Discovery, Numer 19/9, 2020, Strona(/y) 609-633, ISSN 1474-1776
Wydawca: Nature Publishing Group
DOI: 10.1038/s41573-020-0072-x

Gene duplications trace mitochondria to the onset of eukaryote complexity

Autorzy: Fernando D. K. Tria; Julia Brückner; Josip Skejo; Joana C. Xavier; Verena Zimorski; Sven B. Gould; Sriram G. Garg; William F. Martin
Opublikowane w: biorxiv, Numer 1, 2019
Wydawca: Cold Spring Harbor Laboratories
DOI: 10.1101/781211

The theory of two plasma lineages as the basis of symbiogenesis, a new principle for the origin of organisms

Autorzy: Klaus V.Kowallik, William F.Martin
Opublikowane w: Biosystems, Numer 104281, 2020, ISSN 0303-2647
Wydawca: Elsevier BV
DOI: 10.1016/j.biosystems.2020.104281

Symbiogenesis, gradualism, and mitochondrial energy in eukaryote origin

Autorzy: William Martin
Opublikowane w: Periodicum Biologorum, Numer 119/3, 2017, Strona(/y) 141-158, ISSN 0031-5362
Wydawca: Hrvatsko Prirodoslovno Drustvo/Croation Society of Natural Sciences
DOI: 10.18054/pb.v119i3.5694

Asking endosymbionts to do an enzyme’s job

Autorzy: Sriram G. Garg, William F. Martin
Opublikowane w: Proceedings of the National Academy of Sciences, Numer 115/20, 2018, Strona(/y) E4543-E4544, ISSN 0027-8424
Wydawca: National Academy of Sciences
DOI: 10.1073/pnas.1804397115

Why Have Organelles Retained Genomes?

Autorzy: John F. Allen, William F. Martin
Opublikowane w: Cell Systems, Numer 2/2, 2016, Strona(/y) 70-72, ISSN 2405-4712
Wydawca: Elsevier
DOI: 10.1016/j.cels.2016.02.007

Physiology, phylogeny, and the energetic roots of life

Autorzy: William F. Martin
Opublikowane w: Periodicum Biologorum, Numer 118/4, 2017, ISSN 0031-5362
Wydawca: Hrvatsko Prirodoslovno Drustvo/Croation Society of Natural Sciences
DOI: 10.18054/pb.v118i4.4737

Endosymbiotic Theory

Autorzy: S. Garg, V. Zimorski, W.F. Martin
Opublikowane w: The Encyclopedia of Evolutionary Biology, Vol. 1, 2016, Strona(/y) 511-517
Wydawca: Academic Press
DOI: 10.1016/b978-0-12-800049-6.00191-8

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