European Commission logo
italiano italiano
CORDIS - Risultati della ricerca dell’UE
CORDIS

A nanophysics approach to synthetic cell division

Pubblicazioni

Direct observation of independently moving replisomes in Escherichia coli

Autori: Aleksandre Japaridze, Christos Gogou, Jacob W. J. Kerssemakers, Huyen My Nguyen, Cees Dekker
Pubblicato in: Nature Communications, Numero 11/1, 2020, ISSN 2041-1723
Editore: Nature Publishing Group
DOI: 10.1038/s41467-020-16946-7

Direct observation of end resection by RecBCD during double-stranded DNA break repair in vivo

Autori: Jakub Wiktor, Marit van der Does, Lisa Büller, David J Sherratt, Cees Dekker
Pubblicato in: Nucleic Acids Research, Numero 46/4, 2017, Pagina/e 1821-1833, ISSN 0305-1048
Editore: Oxford University Press
DOI: 10.1093/nar/gkx1290

DNA-loop extruding condensin complexes can traverse one another

Autori: Eugene Kim, Jacob Kerssemakers, Indra A. Shaltiel, Christian H. Haering, Cees Dekker
Pubblicato in: Nature, Numero 579/7799, 2020, Pagina/e 438-442, ISSN 0028-0836
Editore: Nature Publishing Group
DOI: 10.1038/s41586-020-2067-5

Mapping out Min protein patterns in fully confined fluidic chambers

Autori: Yaron Caspi, Cees Dekker
Pubblicato in: eLife, Numero 5, 2016, ISSN 2050-084X
Editore: eLife Sciences Publications
DOI: 10.7554/eLife.19271

Human centromeric CENP-A chromatin is a homotypic, octameric nucleosome at all cell cycle points

Autori: Yael Nechemia-Arbely, Daniele Fachinetti, Karen H. Miga, Nikolina Sekulic, Gautam V. Soni, Dong Hyun Kim, Adeline K. Wong, Ah Young Lee, Kristen Nguyen, Cees Dekker, Bing Ren, Ben E. Black, Don W. Cleveland
Pubblicato in: The Journal of Cell Biology, Numero 216/3, 2017, Pagina/e 607-621, ISSN 0021-9525
Editore: Rockefeller University Press
DOI: 10.1083/jcb.201608083

Bacterial Predator-prey dynamics in microscale patchy landscapes

Autori: F.J.H. Hol, O. Rotem, E. Jurkevitch, C. Dekker, D.A. Koster
Pubblicato in: Proceedings of the Royal Society B, Numero 283, 2016, Pagina/e 20152154, ISSN 0962-8452
Editore: Royal Society of London
DOI: 10.1098/rspb.2015.2154

Multistability and dynamic transitions of intracellular Min protein patterns

Autori: Reiter, Matthias; Halatek, Jacob; Frey, Erwin; Wu, Fabai; Dekker, Cees; Kingma, Enzo
Pubblicato in: Molecular Systems Biology, Numero 1, 2016, ISSN 1744-4292
Editore: Nature Publishing Group
DOI: 10.15252/msb.20156724

Intercalation-based single-molecule fluorescence assay to study DNA supercoil dynamics

Autori: M. Ganji, S. H. Kim, J. van der Torre, E. Abbondanzieri, C. Dekker
Pubblicato in: Nano Letters, Numero 16, 2016, Pagina/e 4699, ISSN 1530-6984
Editore: American Chemical Society
DOI: 10.1021/acs.nanolett.6b02213

Condensin Smc2-Smc4 Dimers Are Flexible and Dynamic

Autori: Allard J. Katan; Markus Hassler; Essam M. Dief; Jorine M. Eeftens; Liza de Wilde; Marc Kschonsak; Cees Dekker; Christian H. Haering
Pubblicato in: Cell Reports, Numero 1, 2016, ISSN 2211-1247
Editore: Cell Press
DOI: 10.1016/j.celrep.2016.01.063

Nanofabricated structures and microfluidic devices for bacteria: from techniques to biology

Autori: F. Wu, C. Dekker
Pubblicato in: Chemical Society Reviews, Numero 45, 2016, Pagina/e 268-280, ISSN 0306-0012
Editore: Royal Society of Chemistry
DOI: 10.1039/c5cs00514k

Direct observation of DNA knots using a solid-state nanopore

Autori: Calin Plesa, Daniel Verschueren, Sergii Pud, Jaco van der Torre, Justus W. Ruitenberg, Menno J. Witteveen, Magnus P. Jonsson, Alexander Y. Grosberg, Yitzhak Rabin, Cees Dekker
Pubblicato in: Nature Nanotechnology, Numero 11, 2016, Pagina/e 1093-1097, ISSN 1748-3387
Editore: Nature Publishing Group
DOI: 10.1038/nnano.2016.153

CRISPR-mediated control of the bacterial initiation of replication

Autori: Jakub Wiktor, Christian Lesterlin, David J. Sherratt, Cees Dekker
Pubblicato in: Nucleic Acids Research, Numero 44/8, 2016, Pagina/e 3801-3810, ISSN 0305-1048
Editore: Oxford University Press
DOI: 10.1093/nar/gkw214

Graphene nanodevices for DNA sequencing

Autori: Stephanie J. Heerema, Cees Dekker
Pubblicato in: Nature Nanotechnology, Numero 11/2, 2016, Pagina/e 127-136, ISSN 1748-3387
Editore: Nature Publishing Group
DOI: 10.1038/nnano.2015.307

Mechanical Trapping of DNA in a Double-Nanopore System

Autori: Sergii Pud, Shu-Han Chao, Maxim Belkin, Daniel Verschueren, Teun Huijben, Casper van Engelenburg, Cees Dekker, and Aleksei Aksimentiev
Pubblicato in: Nano Letters, Numero 16, 2016, Pagina/e 8021-8028, ISSN 1530-6984
Editore: American Chemical Society
DOI: 10.1021/acs.nanolett.6b04642

The supercoiling state of DNA determines the handedness of both H3 and CENP-A nucleosomes

Autori: R. Vlijm, S. H. Kim, P. L. De Zwart, Y. Dalal, C. Dekker
Pubblicato in: Nanoscale, Numero 9/5, 2017, Pagina/e 1862-1870, ISSN 2040-3364
Editore: Royal Society of Chemistry
DOI: 10.1039/C6NR06245H

Comparing the Assembly and Handedness Dynamics of (H3.3-H4)2 Tetrasomes to Canonical Tetrasomes

Autori: Orkide Ordu; Alexandra Lusser; Dekker, Nynke H.; Mina Lee; Rifka Vlijm; Cees Dekker; Anastasiya Boltengagen
Pubblicato in: PLoS ONE, Vol 10, Iss 10, p e0141267 (2015), Numero 1, 2015, ISSN 1932-6203
Editore: Public Library of Science
DOI: 10.1371/journal.pone.0141267

Self-aligned plasmonic nanopores by optically controlled dielectric breakdown

Autori: S. Pud, D. Verschueren, N. Vukovic, C. Plesa, M.P. Jonsson,C. Dekker
Pubblicato in: Nano Letters, Numero 15, 2015, Pagina/e 7112-7, ISSN 1530-6984
Editore: American Chemical Society
DOI: 10.1021/acs.nanolett.5b03239

Octanol-assisted liposome assembly on chip

Autori: Siddharth Deshpande, Yaron Caspi, Anna E. C. Meijering, Cees Dekker
Pubblicato in: Nature Communications, Numero 7, 2016, Pagina/e 10447, ISSN 2041-1723
Editore: Nature Publishing Group
DOI: 10.1038/ncomms10447

CENP-A and H3 Nucleosomes Display a Similar Stability to Force-Mediated Disassembly

Autori: Dalal, Yamini; Dekker, Cees; Vlijm, Rifka; Kim, Sung Hyun; van der Torre, Jaco
Pubblicato in: PLoS ONE, Numero 1, 2016, ISSN 1932-6203
Editore: Public Library of Science
DOI: 10.1371/journal.pone.0165078

Tailoring the appearance: what will synthetic cells look like?

Autori: Willem Kasper Spoelstra, Siddharth Deshpande, Cees Dekker
Pubblicato in: Current Opinion in Biotechnology, Numero 51, 2018, Pagina/e 47-56, ISSN 0958-1669
Editore: Elsevier BV
DOI: 10.1016/j.copbio.2017.11.005

Through-membrane electron-beam lithography for ultrathin membrane applications

Autori: M. Neklyudova, A. K. Erdamar, L. Vicarelli, S. J. Heerema, T. Rehfeldt, G. Pandraud, Z. Kolahdouz, C. Dekker, H. W. Zandbergen
Pubblicato in: Applied Physics Letters, Numero 111/6, 2017, Pagina/e 063105, ISSN 0003-6951
Editore: American Institute of Physics
DOI: 10.1063/1.4986991

Spatial structure of disordered proteins dictates conductance and selectivity in nuclear pore complex mimics

Autori: Adithya N Ananth, Ankur Mishra, Steffen Frey, Arvind Dwarkasing, Roderick Versloot, Erik van der Giessen, Dirk Görlich, Patrick Onck, Cees Dekker
Pubblicato in: eLife, Numero 7, 2018, ISSN 2050-084X
Editore: eLife Sciences Publications
DOI: 10.7554/eLife.31510

On-chip density-based purification of liposomes

Autori: Siddharth Deshpande, Anthony Birnie, Cees Dekker
Pubblicato in: Biomicrofluidics, Numero 11/3, 2017, Pagina/e 034106, ISSN 1932-1058
Editore: American Institute of Physics
DOI: 10.1063/1.4983174

SDS-assisted protein transport through solid-state nanopores

Autori: Laura Restrepo-Pérez, Shalini John, Aleksei Aksimentiev, Chirlmin Joo, Cees Dekker
Pubblicato in: Nanoscale, Numero 9/32, 2017, Pagina/e 11685-11693, ISSN 2040-3364
Editore: Royal Society of Chemistry
DOI: 10.1039/c7nr02450a

Bacteria‐in‐paper, a versatile platform to study bacterial ecology

Autori: Felix J. H. Hol, George M. Whitesides, Cees Dekker
Pubblicato in: Ecology Letters, 2019, ISSN 1461-023X
Editore: Blackwell Publishing Inc.
DOI: 10.1111/ele.13274

Distinct Roles for Condensin’s Two ATPase Sites in Chromosome Condensation

Autori: Ahmed M.O. Elbatsh, Eugene Kim, Jorine M. Eeftens, Jonne A. Raaijmakers, Robin H. van der Weide, Alberto García-Nieto, Sol Bravo, Mahipal Ganji, Jelmi uit de Bos, Hans Teunissen, René H. Medema, Elzo de Wit, Christian H. Haering, Cees Dekker, Benjamin D. Rowland
Pubblicato in: Molecular Cell, Numero 76/5, 2019, Pagina/e 724-737.e5, ISSN 1097-2765
Editore: Cell Press
DOI: 10.1016/j.molcel.2019.09.020

Real-time imaging of DNA loop extrusion by condensin

Autori: Mahipal Ganji, Indra A. Shaltiel, Shveta Bisht, Eugene Kim, Ana Kalichava, Christian H. Haering, Cees Dekker
Pubblicato in: Science, Numero 360/6384, 2018, Pagina/e 102-105, ISSN 0036-8075
Editore: American Association for the Advancement of Science
DOI: 10.1126/science.aar7831

Membrane Tension–Mediated Growth of Liposomes

Autori: Siddharth Deshpande, Sreekar Wunnava, David Hueting, Cees Dekker
Pubblicato in: Small, Numero 15/38, 2019, Pagina/e 1902898, ISSN 1613-6810
Editore: Wiley - V C H Verlag GmbbH & Co.
DOI: 10.1002/smll.201902898

An Integrated Microfluidic Platform for Quantifying Drug Permeation across Biomimetic Vesicle Membranes

Autori: Michael Schaich, Jehangir Cama, Kareem Al Nahas, Diana Sobota, Hannah Sleath, Kevin Jahnke, Siddharth Deshpande, Cees Dekker, Ulrich F. Keyser
Pubblicato in: Molecular Pharmaceutics, Numero 16/6, 2019, Pagina/e 2494-2501, ISSN 1543-8384
Editore: American Chemical Society
DOI: 10.1021/acs.molpharmaceut.9b00086

Shape and Size Control of Artificial Cells for Bottom-Up Biology

Autori: Federico Fanalista, Anthony Birnie, Renu Maan, Federica Burla, Kevin Charles, Grzegorz Pawlik, Siddharth Deshpande, Gijsje H. Koenderink, Marileen Dogterom, Cees Dekker
Pubblicato in: ACS Nano, Numero 13/5, 2019, Pagina/e 5439-5450, ISSN 1936-0851
Editore: American Chemical Society
DOI: 10.1021/acsnano.9b00220

Visualization of unstained DNA nanostructures with advanced in-focus phase contrast TEM techniques

Autori: Yoones Kabiri, Raimond B. G. Ravelli, Tibor Lehnert, Haoyuan Qi, Allard J. Katan, Natascha Roest, Ute Kaiser, Cees Dekker, Peter J. Peters, Henny Zandbergen
Pubblicato in: Scientific Reports, Numero 9/1, 2019, ISSN 2045-2322
Editore: Nature Publishing Group
DOI: 10.1038/s41598-019-43687-5

On-chip microfluidic production of cell-sized liposomes

Autori: Siddharth Deshpande, Cees Dekker
Pubblicato in: Nature Protocols, Numero 13/5, 2018, Pagina/e 856-874, ISSN 1754-2189
Editore: Nature Publishing Group
DOI: 10.1038/nprot.2017.160

Reversible Immobilization of Proteins in Sensors and Solid-State Nanopores

Autori: Adithya Ananth, María Genua, Nesrine Aissaoui, Leire Díaz, Nico B. Eisele, Steffen Frey, Cees Dekker, Ralf P. Richter, Dirk Görlich
Pubblicato in: Small, Numero 14/18, 2018, Pagina/e 1703357, ISSN 1613-6810
Editore: Wiley - V C H Verlag GmbbH & Co.
DOI: 10.1002/smll.201703357

Movement dynamics of divisome proteins and PBP2x:FtsW in cells of Streptococcus pneumoniae

Autori: Amilcar J. Perez, Yann Cesbron, Sidney L. Shaw, Jesus Bazan Villicana, Ho-Ching T. Tsui, Michael J. Boersma, Ziyun A. Ye, Yanina Tovpeko, Cees Dekker, Seamus Holden, Malcolm E. Winkler
Pubblicato in: Proceedings of the National Academy of Sciences, Numero 116/8, 2019, Pagina/e 3211-3220, ISSN 0027-8424
Editore: National Academy of Sciences
DOI: 10.1073/pnas.1816018116

Direct imaging of the circular chromosome in a live bacterium

Autori: Fabai Wu, Aleksandre Japaridze, Xuan Zheng, Jakub Wiktor, Jacob W. J. Kerssemakers, Cees Dekker
Pubblicato in: Nature Communications, Numero 10/1, 2019, ISSN 2041-1723
Editore: Nature Publishing Group
DOI: 10.1038/s41467-019-10221-0

The condensin complex is a mechanochemical motor that translocates along DNA

Autori: Tsuyoshi Terakawa, Shveta Bisht, Jorine M. Eeftens, Cees Dekker, Christian H. Haering, Eric C. Greene
Pubblicato in: Science, Numero 358/6363, 2017, Pagina/e 672-676, ISSN 0036-8075
Editore: American Association for the Advancement of Science
DOI: 10.1126/science.aan6516

Detection of CRISPR-dCas9 on DNA with Solid-State Nanopores

Autori: Wayne Yang, Laura Restrepo-Pérez, Michel Bengtson, Stephanie J. Heerema, Anthony Birnie, Jaco van der Torre, Cees Dekker
Pubblicato in: Nano Letters, Numero 18/10, 2018, Pagina/e 6469-6474, ISSN 1530-6984
Editore: American Chemical Society
DOI: 10.1021/acs.nanolett.8b02968

Electro-Mechanical Conductance Modulation of a Nanopore Using a Removable Gate

Autori: Shidi Zhao, Laura Restrepo-Pérez, Misha Soskine, Giovanni Maglia, Chirlmin Joo, Cees Dekker, Aleksei Aksimentiev
Pubblicato in: ACS Nano, 2019, ISSN 1936-0851
Editore: American Chemical Society
DOI: 10.1021/acsnano.8b09266

Synthetic life on a chip

Autori: Siddharth Deshpande, Cees Dekker
Pubblicato in: Emerging Topics in Life Sciences, Numero 3/5, 2019, Pagina/e 559-566, ISSN 2397-8554
Editore: Portland Press
DOI: 10.1042/etls20190097

Treadmilling by FtsZ filaments drives peptidoglycan synthesis and bacterial cell division

Autori: Alexandre W. Bisson-Filho, Yen-Pang Hsu, Georgia R. Squyres, Erkin Kuru, Fabai Wu, Calum Jukes, Yingjie Sun, Cees Dekker, Seamus Holden, Michael S. VanNieuwenhze, Yves V. Brun, Ethan C. Garner
Pubblicato in: Science, Numero 355/6326, 2017, Pagina/e 739-743, ISSN 0036-8075
Editore: American Association for the Advancement of Science
DOI: 10.1126/science.aak9973

Spatiotemporal control of coacervate formation within liposomes

Autori: Siddharth Deshpande, Frank Brandenburg, Anson Lau, Mart G. F. Last, Willem Kasper Spoelstra, Louis Reese, Sreekar Wunnava, Marileen Dogterom, Cees Dekker
Pubblicato in: Nature Communications, Numero 10/1, 2019, ISSN 2041-1723
Editore: Nature Publishing Group
DOI: 10.1038/s41467-019-09855-x

Label-Free Detection of Post-translational Modifications with a Nanopore

Autori: Laura Restrepo-Pérez, Chun Heung Wong, Giovanni Maglia, Cees Dekker, Chirlmin Joo
Pubblicato in: Nano Letters, Numero 19/11, 2019, Pagina/e 7957-7964, ISSN 1530-6984
Editore: American Chemical Society
DOI: 10.1021/acs.nanolett.9b03134

Distortion of DNA Origami on Graphene Imaged with Advanced TEM Techniques

Autori: Yoones Kabiri, Adithya N. Ananth, Jaco van der Torre, Allard Katan, Jin-Yong Hong, Sairam Malladi, Jing Kong, Henny Zandbergen, Cees Dekker
Pubblicato in: Small, Numero 13/31, 2017, Pagina/e 1700876, ISSN 1613-6810
Editore: Wiley - V C H Verlag GmbbH & Co.
DOI: 10.1002/smll.201700876

Dividing the Archaeal Way: The Ancient Cdv Cell-Division Machinery

Autori: Yaron Caspi, Cees Dekker
Pubblicato in: Frontiers in Microbiology, Numero 9, 2018, ISSN 1664-302X
Editore: Frontiers Media
DOI: 10.3389/fmicb.2018.00174

DNA sequence encodes the position of DNA supercoils

Autori: Sung Hyun Kim, Mahipal Ganji, Eugene Kim, Jaco van der Torre, Elio Abbondanzieri, Cees Dekker
Pubblicato in: eLife, Numero 7, 2018, ISSN 2050-084X
Editore: eLife Sciences Publications
DOI: 10.7554/elife.36557

FtsZ-Induced Shape Transformation of Coacervates

Autori: Federico Fanalista, Siddharth Deshpande, Anson Lau, Grzegorz Pawlik, Cees Dekker
Pubblicato in: Advanced Biosystems, Numero 2/9, 2018, Pagina/e 1800136, ISSN 2366-7478
Editore: WILEY‐VCH Verlag GmbH
DOI: 10.1002/adbi.201800136

Resolving Chemical Modifications to a Single Amino Acid within a Peptide Using a Biological Nanopore

Autori: Laura Restrepo-Pérez, Gang Huang, Peggy R. Bohländer, Nathalie Worp, Rienk Eelkema, Giovanni Maglia, Chirlmin Joo, Cees Dekker
Pubblicato in: ACS Nano, Numero 13/12, 2019, Pagina/e 13668-13676, ISSN 1936-0851
Editore: American Chemical Society
DOI: 10.1021/acsnano.9b05156

Mechanical Division of Cell-Sized Liposomes

Autori: Siddharth Deshpande, Willem Kasper Spoelstra, Marleen van Doorn, Jacob Kerssemakers, Cees Dekker
Pubblicato in: ACS Nano, Numero 12/3, 2018, Pagina/e 2560-2568, ISSN 1936-0851
Editore: American Chemical Society
DOI: 10.1021/acsnano.7b08411

A microfluidic platform for the characterisation of membrane active antimicrobials

Autori: K. Al Nahas, J. Cama, M. Schaich, K. Hammond, S. Deshpande, C. Dekker, M. G. Ryadnov, U. F. Keyser
Pubblicato in: Lab on a Chip, Numero 19/5, 2019, Pagina/e 837-844, ISSN 1473-0197
Editore: Royal Society of Chemistry
DOI: 10.1039/c8lc00932e

Paving the way to single-molecule protein sequencing

Autori: Laura Restrepo-Pérez, Chirlmin Joo, Cees Dekker
Pubblicato in: Nature Nanotechnology, Numero 13/9, 2018, Pagina/e 786-796, ISSN 1748-3387
Editore: Nature Publishing Group
DOI: 10.1038/s41565-018-0236-6

Intercalating Electron Dyes for TEM Visualization of DNA at the Single‐Molecule Level

Autori: Yoones Kabiri, Alessandro Angelin, Ishtiaq Ahmed, Hatice Mutlu, Jens Bauer, Christof M. Niemeyer, Henny Zandbergen, Cees Dekker
Pubblicato in: ChemBioChem, Numero 20/6, 2019, Pagina/e 822-830, ISSN 1439-4227
Editore: John Wiley & Sons Ltd.
DOI: 10.1002/cbic.201800638

Catching DNA with hoops—biophysical approaches to clarify the mechanism of SMC proteins

Autori: Jorine Eeftens, Cees Dekker
Pubblicato in: Nature Structural & Molecular Biology, Numero 24/12, 2017, Pagina/e 1012-1020, ISSN 1545-9993
Editore: Nature Publishing Group
DOI: 10.1038/nsmb.3507

Real‐time detection of condensin‐driven DNA compaction reveals a multistep binding mechanism

Autori: Jorine M Eeftens, Shveta Bisht, Jacob Kerssemakers, Marc Kschonsak, Christian H Haering, Cees Dekker
Pubblicato in: The EMBO Journal, Numero 36/23, 2017, Pagina/e 3448-3457, ISSN 0261-4189
Editore: Nature Publishing Group
DOI: 10.15252/embj.201797596

Nano-Optical Tweezing of Single Proteins in Plasmonic Nanopores

Autori: Daniel Verschueren, Xin Shi, Cees Dekker
Pubblicato in: Small Methods, Numero 3/5, 2019, Pagina/e 1800465, ISSN 2366-9608
Editore: WILEY-VCH Verlag GmbH & Co. KGaA
DOI: 10.1002/smtd.201800465

DNA origami scaffold for studying intrinsically disordered proteins of the nuclear pore complex

Autori: Philip Ketterer, Adithya N. Ananth, Diederik S. Laman Trip, Ankur Mishra, Eva Bertosin, Mahipal Ganji, Jaco van der Torre, Patrick Onck, Hendrik Dietz, Cees Dekker
Pubblicato in: Nature Communications, Numero 9/1, 2018, ISSN 2041-1723
Editore: Nature Publishing Group
DOI: 10.1038/s41467-018-03313-w

Cell Boundary Confinement Sets the Size and Position of the E. coli Chromosome

Autori: Fabai Wu, Pinaki Swain, Louis Kuijpers, Xuan Zheng, Kevin Felter, Margot Guurink, Jacopo Solari, Suckjoon Jun, Thomas S. Shimizu, Debasish Chaudhuri, Bela Mulder, Cees Dekker
Pubblicato in: Current Biology, Numero 29/13, 2019, Pagina/e 2131-2144.e4, ISSN 0960-9822
Editore: Cell Press
DOI: 10.1016/j.cub.2019.05.015

Bulk-surface coupling reconciles Min-protein pattern formation in vitro and in vivo

Autori: Brauns, Fridtjof; Pawlik, Grzegorz; Halatek, Jacob; Kerssemakers, Jacob; Frey, Erwin; Dekker, Cees
Pubblicato in: bioRxiv, Numero 3, 2020, ISSN 0362-4331
Editore: New York Times Company
DOI: 10.1101/2020.03.01.971952

È in corso la ricerca di dati su OpenAIRE...

Si è verificato un errore durante la ricerca dei dati su OpenAIRE

Nessun risultato disponibile