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Discovering how polycomb domains form and function in gene regulation

Publicaciones

Identifying proteins bound to native mitotic ESC chromosomes reveals chromatin repressors are important for compaction

Autores: Dounia Djeghloul, Bhavik Patel, Holger Kramer, Andrew Dimond, Chad Whilding, Karen Brown, Anne-Céline Kohler, Amelie Feytout, Nicolas Veland, James Elliott, Tanmay A. M. Bharat, Abul K. Tarafder, Jan Löwe, Bee L. Ng, Ya Guo, Jacky Guy, Miles K. Huseyin, Robert J. Klose, Matthias Merkenschlager, Amanda G. Fisher
Publicado en: Nature Communications, Edición 11/1, 2020, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-020-17823-z

The SET1 Complex Selects Actively Transcribed Target Genes via Multivalent Interaction with CpG Island Chromatin

Autores: David A. Brown, Vincenzo Di Cerbo, Angelika Feldmann, Jaewoo Ahn, Shinsuke Ito, Neil P. Blackledge, Manabu Nakayama, Michael McClellan, Emilia Dimitrova, Anne H. Turberfield, Hannah K. Long, Hamish W. King, Skirmantas Kriaucionis, Lothar Schermelleh, Tatiana G. Kutateladze, Haruhiko Koseki, Robert J. Klose
Publicado en: Cell Reports, Edición 20/10, 2017, Página(s) 2313-2327, ISSN 2211-1247
Editor: Cell Press
DOI: 10.1016/j.celrep.2017.08.030

ATACing DNA Methylation during Differentiation

Autores: Skirmantas Kriaucionis, Robert J. Klose
Publicado en: Molecular Cell, Edición 77/6, 2020, Página(s) 1159-1161, ISSN 1097-2765
Editor: Cell Press
DOI: 10.1016/j.molcel.2020.02.026

RYBP stimulates PRC1 to shape chromatin-based communication between Polycomb repressive complexes

Autores: Nathan R Rose, Hamish W King, Neil P Blackledge, Nadezda A Fursova, Katherine JI Ember, Roman Fischer, Benedikt M Kessler, Robert J Klose
Publicado en: eLife, Edición 5, 2016, ISSN 2050-084X
Editor: eLife Sciences Publications
DOI: 10.7554/elife.18591

KDM2 proteins constrain transcription from CpG island gene promoters independently of their histone demethylase activity

Autores: Anne H Turberfield, Takashi Kondo, Manabu Nakayama, Yoko Koseki, Hamish W King, Haruhiko Koseki, Robert J Klose
Publicado en: Nucleic Acids Research, Edición 47/17, 2019, Página(s) 9005-9023, ISSN 0305-1048
Editor: Oxford University Press
DOI: 10.1093/nar/gkz607

BAP1 constrains pervasive H2AK119ub1 to control the transcriptional potential of the genome

Autores: Nadezda A. Fursova, Anne H. Turberfield, Neil P. Blackledge, Emma L. Findlater, Anna Lastuvkova, Miles K. Huseyin, Paula Dobrinić, Robert J. Klose
Publicado en: Genes & Development, Edición 35/9-10, 2021, Página(s) 749-770, ISSN 0890-9369
Editor: Cold Spring Harbor Laboratory Press
DOI: 10.1101/gad.347005.120

PRC1 Catalytic Activity Is Central to Polycomb System Function

Autores: Neil P. Blackledge, Nadezda A. Fursova, Jessica R. Kelley, Miles K. Huseyin, Angelika Feldmann, Robert J. Klose
Publicado en: Molecular Cell, Edición 77/4, 2020, Página(s) 857-874.e9, ISSN 1097-2765
Editor: Cell Press
DOI: 10.1016/j.molcel.2019.12.001

CDK-Mediator and FBXL19 prime developmental genes for activation by promoting atypical regulatory interactions

Autores: Angelika Feldmann, Emilia Dimitrova, Alexander Kenney, Anna Lastuvkova, Robert J Klose
Publicado en: Nucleic Acids Research, Edición 48/6, 2020, Página(s) 2942-2955, ISSN 0305-1048
Editor: Oxford University Press
DOI: 10.1093/nar/gkaa064

Getting under the skin of Polycomb-dependent gene regulation

Autores: Neil P. Blackledge, Robert J. Klose
Publicado en: Genes & Development, Edición 35/5-6, 2021, Página(s) 301-303, ISSN 0890-9369
Editor: Cold Spring Harbor Laboratory Press
DOI: 10.1101/gad.348257.121

Synergy between Variant PRC1 Complexes Defines Polycomb-Mediated Gene Repression

Autores: Nadezda A. Fursova, Neil P. Blackledge, Manabu Nakayama, Shinsuke Ito, Yoko Koseki, Anca M. Farcas, Hamish W. King, Haruhiko Koseki, Robert J. Klose
Publicado en: Molecular Cell, Edición 74/5, 2019, Página(s) 1020-1036.e8, ISSN 1097-2765
Editor: Cell Press
DOI: 10.1016/j.molcel.2019.03.024

FBXL19 recruits CDK-Mediator to CpG islands of developmental genes priming them for activation during lineage commitment

Autores: Emilia Dimitrova, Takashi Kondo, Angelika Feldmann, Manabu Nakayama, Yoko Koseki, Rebecca Konietzny, Benedikt M Kessler, Haruhiko Koseki, Robert J Klose
Publicado en: eLife, Edición 7, 2018, ISSN 2050-084X
Editor: eLife Sciences Publications
DOI: 10.7554/elife.37084

Distinct contributions of DNA methylation and histone acetylation to the genomic occupancy of transcription factors

Autores: Martin Cusack, Hamish W. King, Paolo Spingardi, Benedikt M. Kessler, Robert J. Klose, Skirmantas Kriaucionis
Publicado en: Genome Research, Edición 30/10, 2020, Página(s) 1393-1406, ISSN 1088-9051
Editor: Cold Spring Harbor Laboratory Press
DOI: 10.1101/gr.257576.119

Live-cell single particle tracking of PRC1 reveals a highly dynamic system with low target site occupancy

Autores: Miles K. Huseyin, Robert J. Klose
Publicado en: Nature Communications, Edición 12/1, 2021, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-021-21130-6

Polycomb repressive complex 1 shapes the nucleosome landscape but not accessibility at target genes

Autores: Hamish W. King, Nadezda A. Fursova, Neil P. Blackledge, Robert J. Klose
Publicado en: Genome Research, Edición 28/10, 2018, Página(s) 1494-1507, ISSN 1088-9051
Editor: Cold Spring Harbor Laboratory Press
DOI: 10.1101/gr.237180.118

MLL-AF4 Spreading Identifies Binding Sites that Are Distinct from Super-Enhancers and that Govern Sensitivity to DOT1L Inhibition in Leukemia

Autores: Jon Kerry, Laura Godfrey, Emmanouela Repapi, Marta Tapia, Neil P. Blackledge, Helen Ma, Erica Ballabio, Sorcha O’Byrne, Frida Ponthan, Olaf Heidenreich, Anindita Roy, Irene Roberts, Marina Konopleva, Robert J. Klose, Huimin Geng, Thomas A. Milne
Publicado en: Cell Reports, Edición 18/2, 2017, Página(s) 482-495, ISSN 2211-1247
Editor: Cell Press
DOI: 10.1016/j.celrep.2016.12.054

Understanding the interplay between CpG island-associated gene promoters and H3K4 methylation

Autores: Amy L. Hughes, Jessica R. Kelley, Robert J. Klose
Publicado en: Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, Edición 1863/8, 2020, Página(s) 194567, ISSN 1874-9399
Editor: Elsevier BV
DOI: 10.1016/j.bbagrm.2020.194567

RYBP stimulates PRC1 to shape chromatin-based communication between Polycomb repressive complexes

Autores: Nathan R Rose, Hamish W King, Neil P Blackledge, Nadezda A Fursova, Katherine JI Ember, Roman Fischer, Benedikt M Kessler, Robert J Klose
Publicado en: eLife, Edición 5, 2016, ISSN 2050-084X
Editor: eLife Sciences Publications
DOI: 10.7554/eLife.18591

Polycomb repressive complex 1 shapes the nucleosome landscape but not accessibility at target genes

Autores: Hamish W. King, Nadezda A. Fursova, Neil P. Blackledge, Robert J. Klose
Publicado en: Genome Research, Edición 28/10, 2018, Página(s) 1494-1507, ISSN 1088-9051
Editor: Cold Spring Harbor Laboratory Press
DOI: 10.1101/gr.237180.118

Synergy between Variant PRC1 Complexes Defines Polycomb-Mediated Gene Repression

Autores: Nadezda A. Fursova, Neil P. Blackledge, Manabu Nakayama, Shinsuke Ito, Yoko Koseki, Anca M. Farcas, Hamish W. King, Haruhiko Koseki, Robert J. Klose
Publicado en: Molecular Cell, Edición 74/5, 2019, Página(s) 1020-1036.e8, ISSN 1097-2765
Editor: Cell Press
DOI: 10.1016/j.molcel.2019.03.024

Cohesin Disrupts Polycomb-Dependent Chromosome Interactions in Embryonic Stem Cells

Autores: James D.P. Rhodes, Angelika Feldmann, Benjamín Hernández-Rodríguez, Noelia Díaz, Jill M. Brown, Nadezda A. Fursova, Neil P. Blackledge, Praveen Prathapan, Paula Dobrinic, Miles K. Huseyin, Aleksander Szczurek, Kai Kruse, Kim A. Nasmyth, Veronica J. Buckle, Juan M. Vaquerizas, Robert J. Klose
Publicado en: Cell Reports, Edición 30/3, 2020, Página(s) 820-835.e10, ISSN 2211-1247
Editor: Cell Press
DOI: 10.1016/j.celrep.2019.12.057

The pioneer factor OCT4 requires the chromatin remodeller BRG1 to support gene regulatory element function in mouse embryonic stem cells

Autores: Hamish W King, Robert J Klose
Publicado en: eLife, Edición 6, 2017, ISSN 2050-084X
Editor: eLife Sciences Publications
DOI: 10.7554/elife.22631

Cohesin Disrupts Polycomb-Dependent Chromosome Interactions in Embryonic Stem Cells

Autores: James D.P. Rhodes, Angelika Feldmann, Benjamín Hernández-Rodríguez, Noelia Díaz, Jill M. Brown, Nadezda A. Fursova, Neil P. Blackledge, Praveen Prathapan, Paula Dobrinic, Miles K. Huseyin, Aleksander Szczurek, Kai Kruse, Kim A. Nasmyth, Veronica J. Buckle, Juan M. Vaquerizas, Robert J. Klose
Publicado en: Cell Reports, Edición 30/3, 2020, Página(s) 820-835.e10, ISSN 2211-1247
Editor: Cell Press
DOI: 10.1016/j.celrep.2019.12.057

PRC1 drives Polycomb-mediated gene repression by controlling transcription initiation and burst frequency

Autores: Paula Dobrinić, Aleksander T. Szczurek, Robert J. Klose
Publicado en: Nature Structural & Molecular Biology, Edición 28/10, 2021, Página(s) 811-824, ISSN 1545-9993
Editor: Nature Publishing Group
DOI: 10.1038/s41594-021-00661-y

PRC1 Catalytic Activity Is Central to Polycomb System Function

Autores: Neil P. Blackledge, Nadezda A. Fursova, Jessica R. Kelley, Miles K. Huseyin, Angelika Feldmann, Robert J. Klose
Publicado en: Molecular Cell, Edición 77/4, 2020, Página(s) 857-874.e9, ISSN 1097-2765
Editor: Cell Press
DOI: 10.1016/j.molcel.2019.12.001

Cohesin disrupts polycomb-dependent chromosome interactions

Autores: JDP Rhodes, A Feldmann, B Hernández-Rodríguez, N Díaz, JM Brown, NA Fursova, NP Blackledge, P Prathapan, P Dobrinic, M Huseyin, A Szczurek, K Kruse, KA Nasmyth, VJ Buckle, JM Vaquerizas, RJ Klose
Publicado en: BioRxiv, 2019
Editor: Cold Spring Harbor Laboratory
DOI: 10.1101/593970

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