Evolution of regulatory landscapes at multiple timescales

Publicaciones

Epigenomic profiling of primate lymphoblastoid cell lines reveals the evolutionary patterns of epigenetic activities in gene regulatory architectures

Autores: Raquel García-Pérez, Paula Esteller-Cucala, Glòria Mas, Irene Lobón, Valerio Di Carlo, Meritxell Riera, Martin Kuhlwilm, Arcadi Navarro, Antoine Blancher, Luciano Di Croce, José Luis Gómez-Skarmeta, David Juan, Tomàs Marquès-Bonet
Publicado en: Nature Communications, Edición 12/1, 2021, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-021-23397-1

Functional Conservation of Divergent p63-Bound cis-Regulatory Elements

Autores: Lourdes Gallardo-Fuentes, José M. Santos-Pereira, Juan J. Tena
Publicado en: Frontiers in Genetics, Edición 11, 2020, ISSN 1664-8021
Editor: Frontiers Media
DOI: 10.3389/fgene.2020.00339

Ancient Genomic Regulatory Blocks Are a Source for Regulatory Gene Deserts in Vertebrates after Whole-Genome Duplications

Autores: María Touceda-Suárez, Elizabeth M Kita, Rafael D Acemel, Panos N Firbas, Marta S Magri, Silvia Naranjo, Juan J Tena, Jose Luis Gómez-Skarmeta, Ignacio Maeso, Manuel Irimia
Publicado en: Molecular Biology and Evolution, Edición 37/10, 2020, Página(s) 2857-2864, ISSN 0737-4038
Editor: Oxford University Press
DOI: 10.1093/molbev/msaa123

An evolutionary perspective of regulatory landscape dynamics in development and disease

Autores: Martin Franke, José Luis Gómez-Skarmeta
Publicado en: Current Opinion in Cell Biology, Edición 55, 2018, Página(s) 24-29, ISSN 0955-0674
Editor: Elsevier BV
DOI: 10.1016/j.ceb.2018.06.009

Amphioxus functional genomics and the origins of vertebrate gene regulation

Autores: Ferdinand Marlétaz, Panos N. Firbas, Ignacio Maeso, Juan J. Tena, Ozren Bogdanovic, Malcolm Perry, Christopher D. R. Wyatt, Elisa de la Calle-Mustienes, Stephanie Bertrand, Demian Burguera, Rafael D. Acemel, Simon J. van Heeringen, Silvia Naranjo, Carlos Herrera-Ubeda, Ksenia Skvortsova, Sandra Jimenez-Gancedo, Daniel Aldea, Yamile Marquez, Lorena Buono, Iryna Kozmikova, Jon Permanyer, Alexandra
Publicado en: Nature, Edición 564/7734, 2018, Página(s) 64-70, ISSN 0028-0836
Editor: Nature Publishing Group
DOI: 10.1038/s41586-018-0734-6

Evolution of embryonic cis-regulatory landscapes between divergent Phallusia and Ciona ascidians

Autores: Alicia Madgwick, Marta Silvia Magri, Christelle Dantec, Damien Gailly, Ulla-Maj Fiuza, Léo Guignard, Sabrina Hettinger, Jose Luis Gomez-Skarmeta, Patrick Lemaire
Publicado en: Developmental Biology, 2019, ISSN 0012-1606
Editor: Academic Press
DOI: 10.1016/j.ydbio.2019.01.003

A conserved Shh cis-regulatory module highlights a common developmental origin of unpaired and paired fins

Autores: Joaquín Letelier, Elisa de la Calle-Mustienes, Joyce Pieretti, Silvia Naranjo, Ignacio Maeso, Tetsuya Nakamura, Juan Pascual-Anaya, Neil H. Shubin, Igor Schneider, Juan Ramón Martinez-Morales, José Luis Gómez-Skarmeta
Publicado en: Nature Genetics, Edición 50/4, 2018, Página(s) 504-509, ISSN 1061-4036
Editor: Nature Publishing Group
DOI: 10.1038/s41588-018-0080-5

4Cin: A computational pipeline for 3D genome modeling and virtual Hi-C analyses from 4C data

Autores: Ibai Irastorza-Azcarate, Rafael D. Acemel, Juan J. Tena, Ignacio Maeso, José Luis Gómez-Skarmeta, Damien P. Devos
Publicado en: PLOS Computational Biology, Edición 14/3, 2018, Página(s) e1006030, ISSN 1553-7358
Editor: Plos
DOI: 10.1371/journal.pcbi.1006030

Characterization of the accessible genome in the human malaria parasite Plasmodium falciparum

Autores: José Luis Ruiz, Juan J Tena, Cristina Bancells, Alfred Cortés, José Luis Gómez-Skarmeta, Elena Gómez-Díaz
Publicado en: Nucleic Acids Research, Edición 46/18, 2018, Página(s) 9414-9431, ISSN 0305-1048
Editor: Oxford University Press
DOI: 10.1093/nar/gky643

Genetic regulation of amphioxus somitogenesis informs the evolution of the vertebrate head mesoderm

Autores: Daniel Aldea, Lucie Subirana, Celine Keime, Lydvina Meister, Ignacio Maeso, Sylvain Marcellini, Jose Luis Gomez-Skarmeta, Stephanie Bertrand, Hector Escriva
Publicado en: Nature Ecology & Evolution, Edición 3/8, 2019, Página(s) 1233-1240, ISSN 2397-334X
Editor: Nature
DOI: 10.1038/s41559-019-0933-z

Assaying Chromatin Accessibility Using ATAC-Seq in Invertebrate Chordate Embryos

Autores: Marta Silvia Magri, Sandra Jiménez-Gancedo, Stephanie Bertrand, Alicia Madgwick, Hector Escrivà, Patrick Lemaire, José Luis Gómez-Skarmeta
Publicado en: Frontiers in Cell and Developmental Biology, Edición 7, 2020, ISSN 2296-634X
Editor: Frontiers
DOI: 10.3389/fcell.2019.00372

Pioneer and repressive functions of p63 during zebrafish embryonic ectoderm specification

Autores: José M. Santos-Pereira, Lourdes Gallardo-Fuentes, Ana Neto, Rafael D. Acemel, Juan J. Tena
Publicado en: Nature Communications, Edición 10/1, 2019, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-019-11121-z

Conservative route to genome compaction in a miniature annelid

Autores: José M. Martín-Durán, Bruno C. Vellutini, Ferdinand Marlétaz, Viviana Cetrangolo, Nevena Cvetesic, Daniel Thiel, Simon Henriet, Xavier Grau-Bové, Allan M. Carrillo-Baltodano, Wenjia Gu, Alexandra Kerbl, Yamile Marquez, Nicolas Bekkouche, Daniel Chourrout, Jose Luis Gómez-Skarmeta, Manuel Irimia, Boris Lenhard, Katrine Worsaae, Andreas Hejnol
Publicado en: Nature Ecology & Evolution, Edición 5/2, 2021, Página(s) 231-242, ISSN 2397-334X
Editor: Nature Publishing Group
DOI: 10.1038/s41559-020-01327-6

CTCF knockout in zebrafish induces alterations in regulatory landscapes and developmental gene expression

Autores: Martin Franke, Elisa De la Calle-Mustienes, Ana Neto, María Almuedo-Castillo, Ibai Irastorza-Azcarate, Rafael D. Acemel, Juan J. Tena, José M. Santos-Pereira, José L. Gómez-Skarmeta
Publicado en: Nature Communications, Edición 12/1, 2021, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-021-25604-5

Gain of gene regulatory network interconnectivity at the origin of vertebrates

Autores: Alejandro Gil-Gálvez; Sandra Jiménez-Gancedo; Rafael D. Acemel; Stéphanie Bertrand; Michael Schubert; Hector Escriva; Juan J. Tena; José Luis Gómez-Skarmeta
Publicado en: BioRxiv, Edición April 27, 2020, 2020, ISSN 2692-8205
Editor: bioRxiv
DOI: 10.1101/2020.04.25.061077

Buscando datos de OpenAIRE...

Publicaciones

Compartir esta página

Descargar