Chromatin Packing and Architectural Proteins in Plants

Project Information

CHROMATADS

Grant agreement ID: 757600

DOI 10.3030/757600

Project closed

EC signature date 25 August 2017

Start date 1 January 2018

End date 31 December 2023

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost € 1 498 216,00

EU contribution € 1 498 216,00

Coordinated by

UNIVERSITAET HOHENHEIM
Germany

Publications

Peer reviewed articles (14)

Identification of the sex-determining factor in the liverwort Marchantia polymorpha reveals unique evolution of sex chromosomes in a haploid system

Author(s): Miyuki Iwasaki, Tomoaki Kajiwara, Yukiko Yasui, Yoshihiro Yoshitake, Motoki Miyazaki, Shogo Kawamura, Noriyuki Suetsugu, Ryuichi Nishihama, Shohei Yamaoka, Dierk Wanke, Kenji Hashimoto, Kazuyuki Kuchitsu, Sean A. Montgomery, Shilpi Singh, Yasuhiro Tanizawa, Masaru Yagura, Takako Mochizuki, Mika Sakamoto, Yasukazu Nakamura, Chang Liu, Frédéric Berger, Katsuyuki T. Yamato, John L. Bowman, Takayuki
Published in: Current Biology, 2021, ISSN 0960-9822
Publisher: Cell Press
DOI: 10.1016/j.cub.2021.10.023

Spatial features and functional implications of plant 3D genomes organization

Author(s): Katherine Domb, Nan Wang, Guillaume Hummel, Chang Liu
Published in: Annual Review of Plant Biology, 2022, ISSN 1543-5008
Publisher: Annual Reviews, Inc.
DOI: 10.1146/annurev-arplant-102720-022810

Characterization of a Plant Nuclear Matrix Constituent Protein in Liverwort

Author(s): Nan Wang, Ezgi Süheyla Karaaslan, Natalie Faiss, Kenneth Wayne Berendzen, Chang Liu
Published in: Frontiers in Plant Science, Issue 12, 2021, ISSN 1664-462X
Publisher: Frontiers Media S. A.
DOI: 10.3389/fpls.2021.670306

Polycomb-mediated repression of paternal chromosomes maintains haploid dosage in diploid embryos of Marchantia

Author(s): Sean Akira Montgomery, Tetsuya Hisanaga, Nan Wang, Elin Axelsson, Svetlana Akimcheva, Milos Sramek, Chang Liu, Frédéric Berger
Published in: Elife, 2022, ISSN 2050-084X
Publisher: eLife Sciences Publications
DOI: 10.7554/elife.79258

Isolation of Lineage Specific Nuclei Based on Distinct Endoreduplication Levels and Tissue-Specific Markers to Study Chromatin Accessibility Landscapes

Author(s): Ezgi Süheyla Karaaslan, Natalie Faiß, Chang Liu, Kenneth Wayne Berendzen
Published in: Plants, Issue 9/11, 2020, Page(s) 1478, ISSN 2223-7747
Publisher: MDPI
DOI: 10.3390/plants9111478

The plant nuclear lamina disassembles to regulate genome folding in stress conditions

Author(s): Nan Wang, Zhidan Wang, Sofia Tzourtzou, Xu Wang, Xiuli Bi, Julia Leimeister, Linhao Xu, Takuya Sakamoto, Sachihiro Matsunaga, Andreas Schaller, Hua Jiang, and Chang Liu
Published in: Nature Plants, 2023, ISSN 2055-0278
Publisher: Nature Publishing Group
DOI: 10.1038/s41477-023-01457-2

Organization and epigenomic control of RNA polymerase III-transcribed genes in plants

Author(s): Guillaume Hummel, Chang Liu
Published in: Current Opinion in Plant Biology, 2022, ISSN 1369-5266
Publisher: Elsevier BV
DOI: 10.1016/j.pbi.2022.102199

Plant lamin-like proteins mediate chromatin tethering at the nuclear periphery

Author(s): Bo Hu, Nan Wang, Xiuli Bi, Ezgi Süheyla Karaaslan, Anna-Lena Weber, Wangsheng Zhu, Kenneth Wayne Berendzen, Chang Liu
Published in: Genome Biology, Issue 20/1, 2019, ISSN 1474-760X
Publisher: Springer Nature
DOI: 10.1186/s13059-019-1694-3

Three-dimensional chromatin packing and positioning of plant genomes

Author(s): Ezgi Süheyla Doğan, Chang Liu
Published in: Nature Plants, Issue 4/8, 2018, Page(s) 521-529, ISSN 2055-0278
Publisher: Springer Nature
DOI: 10.1038/s41477-018-0199-5

Implications of liquid–liquid phase separation in plant chromatin organization and transcriptional control

Author(s): Nan Wang, Chang Liu
Published in: Current Opinion in Genetics & Development, Issue 55, 2019, Page(s) 59-65, ISSN 0959-437X
Publisher: Elsevier BV
DOI: 10.1016/j.gde.2019.06.003

Chromatin domains in space and their functional implications

Author(s): Frédéric Pontvianne, Chang Liu
Published in: Current Opinion in Plant Biology, Issue 54, 2020, Page(s) 1-10, ISSN 1369-5266
Publisher: Elsevier BV
DOI: 10.1016/j.pbi.2019.11.005

Chromatin Organization in Early Land Plants Reveals an Ancestral Association between H3K27me3, Transposons, and Constitutive Heterochromatin

Author(s): Sean A. Montgomery, Yasuhiro Tanizawa, Bence Galik, Nan Wang, Tasuku Ito, Takako Mochizuki, Svetlana Akimcheva, John L. Bowman, Valérie Cognat, Laurence Maréchal-Drouard, Heinz Ekker, Syuan-Fei Hong, Takayuki Kohchi, Shih-Shun Lin, Li-Yu Daisy Liu, Yasukazu Nakamura, Lia R. Valeeva, Eugene V. Shakirov, Dorothy E. Shippen, Wei-Lun Wei, Masaru Yagura, Shohei Yamaoka, Katsuyuki T. Yamato, Chang Liu
Published in: Current Biology, Issue 30/4, 2020, Page(s) 573-588.e7, ISSN 0960-9822
Publisher: Cell Press
DOI: 10.1016/j.cub.2019.12.015

Tiding-up the plant nuclear space: domains, function and dynamics

Author(s): Ana Paula Santos, Valérie Gaudin, Iva Mozgová, Frédéric Pontvianne, Daniel Schubert, Ahmet L Tek, Martina Dvořáčková, Chang Liu, Paul Fransz, Stefanie Rosa, Sara Farrona
Published in: Journal of Experimental Botany, 2020, ISSN 0022-0957
Publisher: Oxford University Press
DOI: 10.1093/jxb/eraa282

Marchantia TCP transcription factor activity correlates with three-dimensional chromatin structure

Author(s): Ezgi Süheyla Karaaslan, Nan Wang, Natalie Faiß, Yuyu Liang, Sean A. Montgomery, Sascha Laubinger, Kenneth Wayne Berendzen, Frédéric Berger, Holger Breuninger, Chang Liu
Published in: Nature Plants, Issue 6/10, 2020, Page(s) 1250-1261, ISSN 2055-0278
Publisher: Nature Publishing Group
DOI: 10.1038/s41477-020-00766-0

Book chapters (1)

Study of Cell-Type-Specific Chromatin Organization: In Situ Hi-C Library Preparation for Low-Input Plant Materials

Author(s): Nan Wang, Chang Liu
Published in: Plant Epigenetics and Epigenomics - Methods and Protocols, Issue 2093, 2020, Page(s) 115-127, ISBN 978-1-0716-0178-5
Publisher: Springer US
DOI: 10.1007/978-1-0716-0179-2_9