Chromatin Packing and Architectural Proteins in Plants

Pubblicazioni

Identification of the sex-determining factor in the liverwort Marchantia polymorpha reveals unique evolution of sex chromosomes in a haploid system

Autori: Miyuki Iwasaki, Tomoaki Kajiwara, Yukiko Yasui, Yoshihiro Yoshitake, Motoki Miyazaki, Shogo Kawamura, Noriyuki Suetsugu, Ryuichi Nishihama, Shohei Yamaoka, Dierk Wanke, Kenji Hashimoto, Kazuyuki Kuchitsu, Sean A. Montgomery, Shilpi Singh, Yasuhiro Tanizawa, Masaru Yagura, Takako Mochizuki, Mika Sakamoto, Yasukazu Nakamura, Chang Liu, Frédéric Berger, Katsuyuki T. Yamato, John L. Bowman, Takayuki
Pubblicato in: Current Biology, 2021, ISSN 0960-9822
Editore: Cell Press
DOI: 10.1016/j.cub.2021.10.023

Spatial features and functional implications of plant 3D genomes organization

Autori: Katherine Domb, Nan Wang, Guillaume Hummel, Chang Liu
Pubblicato in: Annual Review of Plant Biology, 2022, ISSN 1543-5008
Editore: Annual Reviews, Inc.
DOI: 10.1146/annurev-arplant-102720-022810

Characterization of a Plant Nuclear Matrix Constituent Protein in Liverwort

Autori: Nan Wang, Ezgi Süheyla Karaaslan, Natalie Faiss, Kenneth Wayne Berendzen, Chang Liu
Pubblicato in: Frontiers in Plant Science, Numero 12, 2021, ISSN 1664-462X
Editore: Frontiers Media S. A.
DOI: 10.3389/fpls.2021.670306

Polycomb-mediated repression of paternal chromosomes maintains haploid dosage in diploid embryos of Marchantia

Autori: Sean Akira Montgomery, Tetsuya Hisanaga, Nan Wang, Elin Axelsson, Svetlana Akimcheva, Milos Sramek, Chang Liu, Frédéric Berger
Pubblicato in: Elife, 2022, ISSN 2050-084X
Editore: eLife Sciences Publications
DOI: 10.7554/elife.79258

Isolation of Lineage Specific Nuclei Based on Distinct Endoreduplication Levels and Tissue-Specific Markers to Study Chromatin Accessibility Landscapes

Autori: Ezgi Süheyla Karaaslan, Natalie Faiß, Chang Liu, Kenneth Wayne Berendzen
Pubblicato in: Plants, Numero 9/11, 2020, Pagina/e 1478, ISSN 2223-7747
Editore: MDPI
DOI: 10.3390/plants9111478

The plant nuclear lamina disassembles to regulate genome folding in stress conditions

Autori: Nan Wang, Zhidan Wang, Sofia Tzourtzou, Xu Wang, Xiuli Bi, Julia Leimeister, Linhao Xu, Takuya Sakamoto, Sachihiro Matsunaga, Andreas Schaller, Hua Jiang, and Chang Liu
Pubblicato in: Nature Plants, 2023, ISSN 2055-0278
Editore: Nature Publishing Group
DOI: 10.1038/s41477-023-01457-2

Organization and epigenomic control of RNA polymerase III-transcribed genes in plants

Autori: Guillaume Hummel, Chang Liu
Pubblicato in: Current Opinion in Plant Biology, 2022, ISSN 1369-5266
Editore: Elsevier BV
DOI: 10.1016/j.pbi.2022.102199

Plant lamin-like proteins mediate chromatin tethering at the nuclear periphery

Autori: Bo Hu, Nan Wang, Xiuli Bi, Ezgi Süheyla Karaaslan, Anna-Lena Weber, Wangsheng Zhu, Kenneth Wayne Berendzen, Chang Liu
Pubblicato in: Genome Biology, Numero 20/1, 2019, ISSN 1474-760X
Editore: Springer Nature
DOI: 10.1186/s13059-019-1694-3

Three-dimensional chromatin packing and positioning of plant genomes

Autori: Ezgi Süheyla Doğan, Chang Liu
Pubblicato in: Nature Plants, Numero 4/8, 2018, Pagina/e 521-529, ISSN 2055-0278
Editore: Springer Nature
DOI: 10.1038/s41477-018-0199-5

Implications of liquid–liquid phase separation in plant chromatin organization and transcriptional control

Autori: Nan Wang, Chang Liu
Pubblicato in: Current Opinion in Genetics & Development, Numero 55, 2019, Pagina/e 59-65, ISSN 0959-437X
Editore: Elsevier BV
DOI: 10.1016/j.gde.2019.06.003

Chromatin domains in space and their functional implications

Autori: Frédéric Pontvianne, Chang Liu
Pubblicato in: Current Opinion in Plant Biology, Numero 54, 2020, Pagina/e 1-10, ISSN 1369-5266
Editore: Elsevier BV
DOI: 10.1016/j.pbi.2019.11.005

Chromatin Organization in Early Land Plants Reveals an Ancestral Association between H3K27me3, Transposons, and Constitutive Heterochromatin

Autori: Sean A. Montgomery, Yasuhiro Tanizawa, Bence Galik, Nan Wang, Tasuku Ito, Takako Mochizuki, Svetlana Akimcheva, John L. Bowman, Valérie Cognat, Laurence Maréchal-Drouard, Heinz Ekker, Syuan-Fei Hong, Takayuki Kohchi, Shih-Shun Lin, Li-Yu Daisy Liu, Yasukazu Nakamura, Lia R. Valeeva, Eugene V. Shakirov, Dorothy E. Shippen, Wei-Lun Wei, Masaru Yagura, Shohei Yamaoka, Katsuyuki T. Yamato, Chang Liu
Pubblicato in: Current Biology, Numero 30/4, 2020, Pagina/e 573-588.e7, ISSN 0960-9822
Editore: Cell Press
DOI: 10.1016/j.cub.2019.12.015

Tiding-up the plant nuclear space: domains, function and dynamics

Autori: Ana Paula Santos, Valérie Gaudin, Iva Mozgová, Frédéric Pontvianne, Daniel Schubert, Ahmet L Tek, Martina Dvořáčková, Chang Liu, Paul Fransz, Stefanie Rosa, Sara Farrona
Pubblicato in: Journal of Experimental Botany, 2020, ISSN 0022-0957
Editore: Oxford University Press
DOI: 10.1093/jxb/eraa282

Marchantia TCP transcription factor activity correlates with three-dimensional chromatin structure

Autori: Ezgi Süheyla Karaaslan, Nan Wang, Natalie Faiß, Yuyu Liang, Sean A. Montgomery, Sascha Laubinger, Kenneth Wayne Berendzen, Frédéric Berger, Holger Breuninger, Chang Liu
Pubblicato in: Nature Plants, Numero 6/10, 2020, Pagina/e 1250-1261, ISSN 2055-0278
Editore: Nature Publishing Group
DOI: 10.1038/s41477-020-00766-0

Study of Cell-Type-Specific Chromatin Organization: In Situ Hi-C Library Preparation for Low-Input Plant Materials

Autori: Nan Wang, Chang Liu
Pubblicato in: Plant Epigenetics and Epigenomics - Methods and Protocols, Numero 2093, 2020, Pagina/e 115-127, ISBN 978-1-0716-0178-5
Editore: Springer US
DOI: 10.1007/978-1-0716-0179-2_9

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