Chromatin Packing and Architectural Proteins in Plants

Publikacje

Identification of the sex-determining factor in the liverwort Marchantia polymorpha reveals unique evolution of sex chromosomes in a haploid system

Autorzy: Miyuki Iwasaki, Tomoaki Kajiwara, Yukiko Yasui, Yoshihiro Yoshitake, Motoki Miyazaki, Shogo Kawamura, Noriyuki Suetsugu, Ryuichi Nishihama, Shohei Yamaoka, Dierk Wanke, Kenji Hashimoto, Kazuyuki Kuchitsu, Sean A. Montgomery, Shilpi Singh, Yasuhiro Tanizawa, Masaru Yagura, Takako Mochizuki, Mika Sakamoto, Yasukazu Nakamura, Chang Liu, Frédéric Berger, Katsuyuki T. Yamato, John L. Bowman, Takayuki
Opublikowane w: Current Biology, 2021, ISSN 0960-9822
Wydawca: Cell Press
DOI: 10.1016/j.cub.2021.10.023

Spatial features and functional implications of plant 3D genomes organization

Autorzy: Katherine Domb, Nan Wang, Guillaume Hummel, Chang Liu
Opublikowane w: Annual Review of Plant Biology, 2022, ISSN 1543-5008
Wydawca: Annual Reviews, Inc.
DOI: 10.1146/annurev-arplant-102720-022810

Characterization of a Plant Nuclear Matrix Constituent Protein in Liverwort

Autorzy: Nan Wang, Ezgi Süheyla Karaaslan, Natalie Faiss, Kenneth Wayne Berendzen, Chang Liu
Opublikowane w: Frontiers in Plant Science, Numer 12, 2021, ISSN 1664-462X
Wydawca: Frontiers Media S. A.
DOI: 10.3389/fpls.2021.670306

Polycomb-mediated repression of paternal chromosomes maintains haploid dosage in diploid embryos of Marchantia

Autorzy: Sean Akira Montgomery, Tetsuya Hisanaga, Nan Wang, Elin Axelsson, Svetlana Akimcheva, Milos Sramek, Chang Liu, Frédéric Berger
Opublikowane w: Elife, 2022, ISSN 2050-084X
Wydawca: eLife Sciences Publications
DOI: 10.7554/elife.79258

Isolation of Lineage Specific Nuclei Based on Distinct Endoreduplication Levels and Tissue-Specific Markers to Study Chromatin Accessibility Landscapes

Autorzy: Ezgi Süheyla Karaaslan, Natalie Faiß, Chang Liu, Kenneth Wayne Berendzen
Opublikowane w: Plants, Numer 9/11, 2020, Strona(/y) 1478, ISSN 2223-7747
Wydawca: MDPI
DOI: 10.3390/plants9111478

The plant nuclear lamina disassembles to regulate genome folding in stress conditions

Autorzy: Nan Wang, Zhidan Wang, Sofia Tzourtzou, Xu Wang, Xiuli Bi, Julia Leimeister, Linhao Xu, Takuya Sakamoto, Sachihiro Matsunaga, Andreas Schaller, Hua Jiang, and Chang Liu
Opublikowane w: Nature Plants, 2023, ISSN 2055-0278
Wydawca: Nature Publishing Group
DOI: 10.1038/s41477-023-01457-2

Organization and epigenomic control of RNA polymerase III-transcribed genes in plants

Autorzy: Guillaume Hummel, Chang Liu
Opublikowane w: Current Opinion in Plant Biology, 2022, ISSN 1369-5266
Wydawca: Elsevier BV
DOI: 10.1016/j.pbi.2022.102199

Plant lamin-like proteins mediate chromatin tethering at the nuclear periphery

Autorzy: Bo Hu, Nan Wang, Xiuli Bi, Ezgi Süheyla Karaaslan, Anna-Lena Weber, Wangsheng Zhu, Kenneth Wayne Berendzen, Chang Liu
Opublikowane w: Genome Biology, Numer 20/1, 2019, ISSN 1474-760X
Wydawca: Springer Nature
DOI: 10.1186/s13059-019-1694-3

Three-dimensional chromatin packing and positioning of plant genomes

Autorzy: Ezgi Süheyla Doğan, Chang Liu
Opublikowane w: Nature Plants, Numer 4/8, 2018, Strona(/y) 521-529, ISSN 2055-0278
Wydawca: Springer Nature
DOI: 10.1038/s41477-018-0199-5

Implications of liquid–liquid phase separation in plant chromatin organization and transcriptional control

Autorzy: Nan Wang, Chang Liu
Opublikowane w: Current Opinion in Genetics & Development, Numer 55, 2019, Strona(/y) 59-65, ISSN 0959-437X
Wydawca: Elsevier BV
DOI: 10.1016/j.gde.2019.06.003

Chromatin domains in space and their functional implications

Autorzy: Frédéric Pontvianne, Chang Liu
Opublikowane w: Current Opinion in Plant Biology, Numer 54, 2020, Strona(/y) 1-10, ISSN 1369-5266
Wydawca: Elsevier BV
DOI: 10.1016/j.pbi.2019.11.005

Chromatin Organization in Early Land Plants Reveals an Ancestral Association between H3K27me3, Transposons, and Constitutive Heterochromatin

Autorzy: Sean A. Montgomery, Yasuhiro Tanizawa, Bence Galik, Nan Wang, Tasuku Ito, Takako Mochizuki, Svetlana Akimcheva, John L. Bowman, Valérie Cognat, Laurence Maréchal-Drouard, Heinz Ekker, Syuan-Fei Hong, Takayuki Kohchi, Shih-Shun Lin, Li-Yu Daisy Liu, Yasukazu Nakamura, Lia R. Valeeva, Eugene V. Shakirov, Dorothy E. Shippen, Wei-Lun Wei, Masaru Yagura, Shohei Yamaoka, Katsuyuki T. Yamato, Chang Liu
Opublikowane w: Current Biology, Numer 30/4, 2020, Strona(/y) 573-588.e7, ISSN 0960-9822
Wydawca: Cell Press
DOI: 10.1016/j.cub.2019.12.015

Tiding-up the plant nuclear space: domains, function and dynamics

Autorzy: Ana Paula Santos, Valérie Gaudin, Iva Mozgová, Frédéric Pontvianne, Daniel Schubert, Ahmet L Tek, Martina Dvořáčková, Chang Liu, Paul Fransz, Stefanie Rosa, Sara Farrona
Opublikowane w: Journal of Experimental Botany, 2020, ISSN 0022-0957
Wydawca: Oxford University Press
DOI: 10.1093/jxb/eraa282

Marchantia TCP transcription factor activity correlates with three-dimensional chromatin structure

Autorzy: Ezgi Süheyla Karaaslan, Nan Wang, Natalie Faiß, Yuyu Liang, Sean A. Montgomery, Sascha Laubinger, Kenneth Wayne Berendzen, Frédéric Berger, Holger Breuninger, Chang Liu
Opublikowane w: Nature Plants, Numer 6/10, 2020, Strona(/y) 1250-1261, ISSN 2055-0278
Wydawca: Nature Publishing Group
DOI: 10.1038/s41477-020-00766-0

Study of Cell-Type-Specific Chromatin Organization: In Situ Hi-C Library Preparation for Low-Input Plant Materials

Autorzy: Nan Wang, Chang Liu
Opublikowane w: Plant Epigenetics and Epigenomics - Methods and Protocols, Numer 2093, 2020, Strona(/y) 115-127, ISBN 978-1-0716-0178-5
Wydawca: Springer US
DOI: 10.1007/978-1-0716-0179-2_9

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