Epigenetic Diversity in Ecology

Risultati finali

Recruitment: vacancies advertised
EpiDiverse publications in open access repositories
Final open conference

Final open conference in Seville or alternatively in online format if an inperson meeting in Seville is not possible due to Covid19

Fact sheets and email list

Ecological Epigenetics fact sheets and email list

EpiDiverse website

EpiDiverse website online

Epigenetics online teaching portal

Epigenetics online teaching portal added to website

Short movies of ESR research

Information booklet ‘epigenetics in conservation'

Information booklet epigenetics in conservation

Pubblicazioni

EpiDiverse Toolkit: a pipeline suite for the analysis of bisulfite sequencing data in ecological plant epigenetics

Autori: Adam Nunn, Sultan Nilay Can, Christian Otto, Mario Fasold, Bárbara Díez Rodríguez, Noé Fernández-Pozo, Stefan A Rensing, Peter F Stadler, David Langenberger
Pubblicato in: NAR Genomics and Bioinformatics, Numero Volume 3, Numero 4, 2021, ISSN 2631-9268
Editore: Oxford Academic

ANCHOR: A Technical Approach to Monitor Single-Copy Locus Localization in Planta

Autori: Anis Meschichi; Mathieu Ingouff; Claire Picart; Marie Mirouze; Sophie Desset; Franck Gallardo; Kerstin Bystricky; Nathalie Picault; Stefanie Rosa; Frédéric Pontvianne
Pubblicato in: Frontiers in Plant Science, Numero 3, 2021, ISSN 1664-462X
Editore: Frontiers Media S. A.
DOI: 10.3389/fpls.2021.677849

DNA Methylation Can Mediate Local Adaptation and Response to Climate Change in the Clonal Plant Fragaria vesca: Evidence From a European-Scale Reciprocal Transplant Experiment

Autori: Sammarco Iris; Münzbergová Zuzana; Latzel Vít
Pubblicato in: Frontiers in Plant Sciene, Numero 3, 2022, ISSN 1664-462X
Editore: Frontiers Media S. A.
DOI: 10.3389/fpls.2022.827166

epiGBS2: Improvements and evaluation of highly multiplexed, epiGBS‐based reduced representation bisulfite sequencing

Autori: Gawehns, F; Postuma, M; van Antro, M; Nunn, A; Sepers, B; Fatma, S; van Gurp, TP; Wagemaker, CAM; Mateman, AC; Milanovic-Ivanovic, S; Grosse, I; van Oers, K; Vergeer, P; Verhoeven, KJF
Pubblicato in: Molecular Ecology Resources, Numero 3, 2022, ISSN 1755-0998
Editore: Wiley-Blackwell
DOI: 10.1111/1755-0998.13597

Playing with genetic and epigenetic concepts at the school: an Epigenetic Orchestra project

Autori: Conchita Alonso; Yolanda Palomares
Pubblicato in: Evolution: Education and Outreach, Numero 5, 2021, ISSN 1936-6434
Editore: BioMed Central Ltd
DOI: 10.1186/s12052-021-00146-y

Comprehensive benchmarking of software for mapping whole genome bisulfite data: from read alignment to DNA methylation analysis

Autori: Adam Nunn, Christian Otto, Peter F Stadler, David Langenberger
Pubblicato in: Briefings in Bioinformatics, 2021, ISSN 1467-5463
Editore: Oxford University Press
DOI: 10.1093/bib/bbab021

A Blind and Independent Benchmark Study for Detecting Differentially Methylated Regions in Plants

Autori: Kreutz, Clemens; Can, Sultan Nilay; Schulze Bruening, Ralf; Meyberg, Rabea; Merai, Zsuzsanna; Fernandez-Pozo, Noe; Rensing, Stefan A.
Pubblicato in: BIOINFORMATICS, Numero 3, 2020, ISSN 1460-2059
Editore: Oxford University Press
DOI: 10.1093/bioinformatics/btaa191

Large tandem duplications affect gene expression, 3D organization, and plant–pathogen response

Autori: Ariadna Picart-Picolo, Stefan Grob, Nathalie Picault, Michal Franek, Christel Llauro, Thierry Halter, Tom R. Maier, Edouard Jobet, Julie Descombin, Panpan Zhang, Vijayapalani Paramasivan, Thomas J. Baum, Lionel Navarro, Martina Dvořáčková, Marie Mirouze, Frédéric Pontvianne
Pubblicato in: Genome Research, Numero 30/11, 2020, Pagina/e 1583-1592, ISSN 1088-9051
Editore: Cold Spring Harbor Laboratory Press
DOI: 10.1101/gr.261586.120

Epigenetics in plant organismic interactions

Autori: Daniela Ramos-Cruz, A. Niloya Troyee, Claude Becker
Pubblicato in: Current Opinion in Plant Biology, Numero 61, 2021, Pagina/e 102060, ISSN 1369-5266
Editore: Elsevier BV
DOI: 10.1016/j.pbi.2021.102060

The role of plant epigenetics in biotic interactions

Autori: Conchita Alonso, Daniela Ramos‐Cruz, Claude Becker
Pubblicato in: New Phytologist, Numero 221/2, 2018, Pagina/e 731-737, ISSN 0028-646X
Editore: Blackwell Publishing Inc.
DOI: 10.1111/nph.15408

Epigenetic targeting of transposon relics: beating the dead horses of the genome?

Autori: Sammarco Iris; Pieters Janto; Salony Susnata; Toman Izabela; Zolotarov Grygoriy; Lafon Placette Clément
Pubblicato in: Epigenetics, Numero 4, 2022, ISSN 1559-2308
Editore: Taylor & Francis
DOI: 10.1080/15592294.2021.2022066

The EpiDiverse Plant Epigenome-Wide Association Studies (EWAS) Pipeline

Autori: Sultan Nilay Can, Adam Nunn, Dario Galanti, David Langenberger, Claude Becker, Katharina Volmer, Katrin Heer, Lars Opgenoorth, Noe Fernandez-Pozo and Stefan A. Rensing
Pubblicato in: Epigenomes, 2021, ISSN 2075-4655
Editore: MDPI

Chromosome-level Thlaspi arvense genome provides new tools for translational research and for a newly domesticated cash cover crop of the cooler climates

Autori: Adam Nunn, Isaac Rodríguez-Arévalo, Zenith Tandukar, Katherine Frels, Adrián Contreras-Garrido, Pablo Carbonell-Bejerano, Panpan Zhang, Daniela Ramos Cruz, Katharina Jandrasits, Christa Lanz, Anthony Brusa, Marie Mirouze, Kevin Dorn, David W Galbraith, Brice A. Jarvis, John C. Sedbrook, Donald L. Wyse, Christian Otto, David Langenberger, Peter F. Stadler, Detlef Weigel, M. David Marks, James A.
Pubblicato in: Plant Biotechnology Journal, 2022, Pagina/e pp 1-20, ISSN 1467-7652
Editore: Wiley on line publishers
DOI: 10.1111/pbi.13775

Plant epigenetics: phenotypic and functional diversity beyond the DNA sequence

Autori: MT Boquete; A Muyle; C Alonso
Pubblicato in: American Journal of Botany, Numero 5, 2021, ISSN 1537-2197
Editore: Botanical Society of America
DOI: 10.1002/ajb2.1645

Large tandem duplications affect gene expression, 3D organization, and plant–pathogen response

Autori: Picart-Picolo, Ariadna; Grob, Stefan; Picault, Nathalie; Franek, Michal; Llauro, Christel; Halter, Thierry; Maier, Tom R.; Jobet, Edouard; Descombin, Julie; Zhang, Panpan; Paramasivan, Vijayapalani; Baum, Thomas J.; Navarro, Lionel; Dvořáčková, Martina; Mirouze, Marie; Pontvianne, Frédéric
Pubblicato in: https://hal-univ-perp.archives-ouvertes.fr/hal-02962580, Numero 3, 2021, ISSN 1088-9051
Editore: Cold Spring Harbor Laboratory Press
DOI: 10.5167/uzh-196601

ecc_finder: A Robust and Accurate Tool for Detecting Extrachromosomal Circular DNA From Sequencing Data

Autori: Marie Mirouze; Panpan Zhang; Christel Llauro; Hoaran Peng; Etienne Bucher
Pubblicato in: Frontiers in Plant Science, Numero 3, 2021, ISSN 1664-462X
Editore: Frontiers Media S. A.
DOI: 10.3389/fpls.2021.743742

A Critical Guide for Studies on Epigenetic Inheritance in Plants

Autori: Daniela Ramos Cruz, Claude Becker
Pubblicato in: Plant Epigenetics and Epigenomics - Methods and Protocols, Numero 2093, 2020, Pagina/e 261-270, ISBN 978-1-0716-0178-5
Editore: Springer US
DOI: 10.1007/978-1-0716-0179-2_18

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