Epigenetic Diversity in Ecology

Rezultaty

Recruitment: vacancies advertised
EpiDiverse publications in open access repositories
Final open conference

Final open conference in Seville or alternatively in online format if an inperson meeting in Seville is not possible due to Covid19

Fact sheets and email list

Ecological Epigenetics fact sheets and email list

EpiDiverse website

EpiDiverse website online

Epigenetics online teaching portal

Epigenetics online teaching portal added to website

Short movies of ESR research

Information booklet ‘epigenetics in conservation'

Information booklet epigenetics in conservation

Publikacje

EpiDiverse Toolkit: a pipeline suite for the analysis of bisulfite sequencing data in ecological plant epigenetics

Autorzy: Adam Nunn, Sultan Nilay Can, Christian Otto, Mario Fasold, Bárbara Díez Rodríguez, Noé Fernández-Pozo, Stefan A Rensing, Peter F Stadler, David Langenberger
Opublikowane w: NAR Genomics and Bioinformatics, Numer Volume 3, Numer 4, 2021, ISSN 2631-9268
Wydawca: Oxford Academic

ANCHOR: A Technical Approach to Monitor Single-Copy Locus Localization in Planta

Autorzy: Anis Meschichi; Mathieu Ingouff; Claire Picart; Marie Mirouze; Sophie Desset; Franck Gallardo; Kerstin Bystricky; Nathalie Picault; Stefanie Rosa; Frédéric Pontvianne
Opublikowane w: Frontiers in Plant Science, Numer 3, 2021, ISSN 1664-462X
Wydawca: Frontiers Media S. A.
DOI: 10.3389/fpls.2021.677849

DNA Methylation Can Mediate Local Adaptation and Response to Climate Change in the Clonal Plant Fragaria vesca: Evidence From a European-Scale Reciprocal Transplant Experiment

Autorzy: Sammarco Iris; Münzbergová Zuzana; Latzel Vít
Opublikowane w: Frontiers in Plant Sciene, Numer 3, 2022, ISSN 1664-462X
Wydawca: Frontiers Media S. A.
DOI: 10.3389/fpls.2022.827166

epiGBS2: Improvements and evaluation of highly multiplexed, epiGBS‐based reduced representation bisulfite sequencing

Autorzy: Gawehns, F; Postuma, M; van Antro, M; Nunn, A; Sepers, B; Fatma, S; van Gurp, TP; Wagemaker, CAM; Mateman, AC; Milanovic-Ivanovic, S; Grosse, I; van Oers, K; Vergeer, P; Verhoeven, KJF
Opublikowane w: Molecular Ecology Resources, Numer 3, 2022, ISSN 1755-0998
Wydawca: Wiley-Blackwell
DOI: 10.1111/1755-0998.13597

Playing with genetic and epigenetic concepts at the school: an Epigenetic Orchestra project

Autorzy: Conchita Alonso; Yolanda Palomares
Opublikowane w: Evolution: Education and Outreach, Numer 5, 2021, ISSN 1936-6434
Wydawca: BioMed Central Ltd
DOI: 10.1186/s12052-021-00146-y

Comprehensive benchmarking of software for mapping whole genome bisulfite data: from read alignment to DNA methylation analysis

Autorzy: Adam Nunn, Christian Otto, Peter F Stadler, David Langenberger
Opublikowane w: Briefings in Bioinformatics, 2021, ISSN 1467-5463
Wydawca: Oxford University Press
DOI: 10.1093/bib/bbab021

A Blind and Independent Benchmark Study for Detecting Differentially Methylated Regions in Plants

Autorzy: Kreutz, Clemens; Can, Sultan Nilay; Schulze Bruening, Ralf; Meyberg, Rabea; Merai, Zsuzsanna; Fernandez-Pozo, Noe; Rensing, Stefan A.
Opublikowane w: BIOINFORMATICS, Numer 3, 2020, ISSN 1460-2059
Wydawca: Oxford University Press
DOI: 10.1093/bioinformatics/btaa191

Large tandem duplications affect gene expression, 3D organization, and plant–pathogen response

Autorzy: Ariadna Picart-Picolo, Stefan Grob, Nathalie Picault, Michal Franek, Christel Llauro, Thierry Halter, Tom R. Maier, Edouard Jobet, Julie Descombin, Panpan Zhang, Vijayapalani Paramasivan, Thomas J. Baum, Lionel Navarro, Martina Dvořáčková, Marie Mirouze, Frédéric Pontvianne
Opublikowane w: Genome Research, Numer 30/11, 2020, Strona(/y) 1583-1592, ISSN 1088-9051
Wydawca: Cold Spring Harbor Laboratory Press
DOI: 10.1101/gr.261586.120

Epigenetics in plant organismic interactions

Autorzy: Daniela Ramos-Cruz, A. Niloya Troyee, Claude Becker
Opublikowane w: Current Opinion in Plant Biology, Numer 61, 2021, Strona(/y) 102060, ISSN 1369-5266
Wydawca: Elsevier BV
DOI: 10.1016/j.pbi.2021.102060

The role of plant epigenetics in biotic interactions

Autorzy: Conchita Alonso, Daniela Ramos‐Cruz, Claude Becker
Opublikowane w: New Phytologist, Numer 221/2, 2018, Strona(/y) 731-737, ISSN 0028-646X
Wydawca: Blackwell Publishing Inc.
DOI: 10.1111/nph.15408

Epigenetic targeting of transposon relics: beating the dead horses of the genome?

Autorzy: Sammarco Iris; Pieters Janto; Salony Susnata; Toman Izabela; Zolotarov Grygoriy; Lafon Placette Clément
Opublikowane w: Epigenetics, Numer 4, 2022, ISSN 1559-2308
Wydawca: Taylor & Francis
DOI: 10.1080/15592294.2021.2022066

The EpiDiverse Plant Epigenome-Wide Association Studies (EWAS) Pipeline

Autorzy: Sultan Nilay Can, Adam Nunn, Dario Galanti, David Langenberger, Claude Becker, Katharina Volmer, Katrin Heer, Lars Opgenoorth, Noe Fernandez-Pozo and Stefan A. Rensing
Opublikowane w: Epigenomes, 2021, ISSN 2075-4655
Wydawca: MDPI

Chromosome-level Thlaspi arvense genome provides new tools for translational research and for a newly domesticated cash cover crop of the cooler climates

Autorzy: Adam Nunn, Isaac Rodríguez-Arévalo, Zenith Tandukar, Katherine Frels, Adrián Contreras-Garrido, Pablo Carbonell-Bejerano, Panpan Zhang, Daniela Ramos Cruz, Katharina Jandrasits, Christa Lanz, Anthony Brusa, Marie Mirouze, Kevin Dorn, David W Galbraith, Brice A. Jarvis, John C. Sedbrook, Donald L. Wyse, Christian Otto, David Langenberger, Peter F. Stadler, Detlef Weigel, M. David Marks, James A.
Opublikowane w: Plant Biotechnology Journal, 2022, Strona(/y) pp 1-20, ISSN 1467-7652
Wydawca: Wiley on line publishers
DOI: 10.1111/pbi.13775

Plant epigenetics: phenotypic and functional diversity beyond the DNA sequence

Autorzy: MT Boquete; A Muyle; C Alonso
Opublikowane w: American Journal of Botany, Numer 5, 2021, ISSN 1537-2197
Wydawca: Botanical Society of America
DOI: 10.1002/ajb2.1645

Large tandem duplications affect gene expression, 3D organization, and plant–pathogen response

Autorzy: Picart-Picolo, Ariadna; Grob, Stefan; Picault, Nathalie; Franek, Michal; Llauro, Christel; Halter, Thierry; Maier, Tom R.; Jobet, Edouard; Descombin, Julie; Zhang, Panpan; Paramasivan, Vijayapalani; Baum, Thomas J.; Navarro, Lionel; Dvořáčková, Martina; Mirouze, Marie; Pontvianne, Frédéric
Opublikowane w: https://hal-univ-perp.archives-ouvertes.fr/hal-02962580, Numer 3, 2021, ISSN 1088-9051
Wydawca: Cold Spring Harbor Laboratory Press
DOI: 10.5167/uzh-196601

ecc_finder: A Robust and Accurate Tool for Detecting Extrachromosomal Circular DNA From Sequencing Data

Autorzy: Marie Mirouze; Panpan Zhang; Christel Llauro; Hoaran Peng; Etienne Bucher
Opublikowane w: Frontiers in Plant Science, Numer 3, 2021, ISSN 1664-462X
Wydawca: Frontiers Media S. A.
DOI: 10.3389/fpls.2021.743742

A Critical Guide for Studies on Epigenetic Inheritance in Plants

Autorzy: Daniela Ramos Cruz, Claude Becker
Opublikowane w: Plant Epigenetics and Epigenomics - Methods and Protocols, Numer 2093, 2020, Strona(/y) 261-270, ISBN 978-1-0716-0178-5
Wydawca: Springer US
DOI: 10.1007/978-1-0716-0179-2_18

Rezultaty

Publikacje

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