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CORDIS

The Molecular Dynamics of Membrane Contact Sites

Publications

Estimating the accuracy of the MARTINI model towards the investigation of Peripheral Protein-Membrane Interactions

Author(s): Sriraksha Srinivasan, Valeria Zoni, Stefano Vanni
Published in: Faraday Discussions, 2020, ISSN 1359-6640
Publisher: Royal Society of Chemistry
DOI: 10.1039/d0fd00058b

Recharging your fats: CHARMM36 parameters for neutral lipids triacylglycerol and diacylglycerol

Author(s): Pablo Campomanes, Janak Prabhu, Valeria Zoni, Stefano Vanni
Published in: Biophysical Reports, Issue 1, 2021, Page(s) 100034, ISSN 2667-0747
Publisher: Elsevier
DOI: 10.1016/j.bpr.2021.100034

Pragmatic Coarse-Graining of Proteins: Models and Applications

Author(s): Luís Borges-Araújo; Ilias Patmanidis; Akhil P. Singh; Lucianna H. S. Santos; Adam K. Sieradzan; Stefano Vanni; Cezary Czaplewski; Sergio Pantano; Wataru Shinoda; Luca Monticelli; Adam Liwo; Siewert J. Marrink; Paulo C. T. Souza
Published in: Journal of Chemical Theory and Computation, 2023, ISSN 1549-9618
Publisher: American Chemical Society
DOI: 10.1021/acs.jctc.3c00733

Computational Approaches to Investigate and Design Lipid-binding Domains for Membrane Biosensing

Author(s): Sriraksha Srinivasan, Stefano Vanni
Published in: CHIMIA, Issue 75, 2021, Page(s) 1031-36, ISSN 0009-4293
Publisher: Schweizerische Chemische Gedellschaft
DOI: 10.2533/chimia.2021.1031

In situ architecture of the ER–mitochondria encounter structure

Author(s): Michael R. Wozny, Andrea Di Luca, Dustin R. Morado, Andrea Picco, Rasha Khaddaj, Pablo Campomanes, Lazar Ivanović, Patrick C. Hoffmann, Elizabeth A. Miller, Stefano Vanni and Wanda Kukulski
Published in: Nature, 2023, ISSN 0028-0836
Publisher: Nature Publishing Group
DOI: 10.1038/s41586-023-06050-3

An <i>in silico</i> osmotic pressure approach allows characterization of pressure–area isotherms of lipid monolayers at low molecular areas

Author(s): Janak Prabhu; Akhil Pratap Singh; Stefano Vanni
Published in: Soft Matter, 2023, ISSN 1744-683X
Publisher: Royal Society of Chemistry
DOI: 10.1039/d2sm01419j

DLC3/Cv-c function in testis development in humans and Drosophila: implication for variants of sex development

Author(s): Sol Sotillos; Isabel von der Decken; Ivan Domenech Mercadé; Sriraksha Srinivasan; Stefano Vanni; Serge Nef; Anna Biason-Lauber; Daniel Rodríguez Gutiérrez; James C-G Hombría
Published in: eLife, 2022, ISSN 2050-084X
Publisher: eLife Sciences Publications
DOI: 10.1101/2022.07.28.501838

DNA Self-Assembly of Single Molecules with Deterministic Position and Orientation

Author(s): Aleksandra K. Adamczyk; Teun A. P. M. Huijben; Miguel Sison; Andrea Di Luca; Germán Chiarelli; Stefano Vanni; Sophie Brasselet; Kim I. Mortensen; Fernando D. Stefani; Mauricio Pilo-Pais; Guillermo P. Acuna
Published in: Nano letters, 2022, ISSN 1530-6984
Publisher: American Chemical Society
DOI: 10.1021/acsnano.2c06936

Computational modeling of membrane trafficking processes: From large molecular assemblies to chemical specificity

Author(s): Jennifer Sapia, Daniel Alvarez, Stefano Vanni
Published in: Current Opinion in Cell Biology, 2023, ISSN 0955-0674
Publisher: Elsevier BV
DOI: 10.1016/j.ceb.2023.102205

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