Microbial Communities in Biomedical and Environmental Areas, and Systems Biology

CORDIS proporciona enlaces a los documentos públicos y las publicaciones de los proyectos de los programas marco HORIZONTE.

Los enlaces a los documentos y las publicaciones de los proyectos del Séptimo Programa Marco, así como los enlaces a algunos tipos de resultados específicos, como conjuntos de datos y «software», se obtienen dinámicamente de OpenAIRE .

Resultado final

Report from Conference on Integrative Metagenomics

Report from Conference on IntegrativeMetagenomics

Organized summer school at BIOCEV
Report from Conference on Microbial Communities: Function, Structure and Complexity

Report from Conference on MicrobialCommunities Function Structure and Complexity

Report on organized courses Computational Genomics
Organized Advanced course in metagenomics and OMICs data integration
Dissemination and Communication strategy document prepared

Dissemination and Communication strategy document prepared

Report on organized courses Methods of Functional Genomics

Report on organized courses Methods of FunctionalGenomics

MiCoBion webpage developed

Publicaciones

Adaptive iron utilization compensates for the lack of an inducible uptake system in Naegleria fowleri and represents a potential target for therapeutic intervention

Autores: Arbon, D; Zeniskova, K; Mach, J; Grechnikova, M; Malych, R; Talacko, P; Sutak, R
Publicado en: PLOS NEGLECTED TROPICAL DISEASES, 2020, ISSN 1935-2735
Editor: Public Library of Science
DOI: 10.1371/journal.pntd.0007759

Cytidine nucleoside analog is an effective antiviral drug against Trichomonasvirus

Autores: Narayanasamy, RK; Rada, P; Zdrha, A; van Ranst, M; Neyts, J; Tachezy, J
Publicado en: JOURNAL OF MICROBIOLOGY IMMUNOLOGY AND INFECTION, 2022, ISSN 1684-1182
Editor: Elsevier Taiwan
DOI: 10.1016/j.jmii.2021.08.008

Copper Metabolism in Naegleria gruberi and Its Deadly Relative Naegleria fowleri

Autores: Kateřina Ženíšková; Maria Grechnikova; Robert Sutak
Publicado en: FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY, Edición 9, 2022, ISSN 2296-634X
Editor: Frontiers Media S.A.
DOI: 10.3389/fcell.2022.853463

Late Pleistocene Expansion of Small Murid Rodents across the Palearctic in Relation to the Past Environmental Changes

Autores: Kozyra, K; Zajac, TM; Ansorge, H; Wierzbicki, H; Moska, M; Stanko, M; Stopka, P
Publicado en: GENES, 2021, ISSN 2073-4425
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/genes12050642

Proteomic Analysis of Trichomonas vaginalis Phagolysosome, Lysosomal Targeting, and Unconventional Secretion of Cysteine Peptidases

Autores: Zimmann, N; Rada, P; Zarsky, V; Smutna, T; Zahonova, K; Dacks, J; Harant, K; Hrdy, I; Tachezy, J
Publicado en: MOLECULAR & CELLULAR PROTEOMICS, 2022, ISSN 1535-9484
Editor: American Society for Biochemistry and Molecular Biology
DOI: 10.1016/j.mcpro.2021.100174

Copper detoxification machinery of the brain-eating amoeba Naegleria fowleri involves copper-translocating ATPase and the antioxidant system

Autores: Grechnikova, M; Zeniskova, K; Malych, R; Mach, J; Sutak, R
Publicado en: INTERNATIONAL JOURNAL FOR PARASITOLOGY-DRUGS AND DRUG RESISTANCE, 2020, ISSN 2211-3207
Editor: Elsevier BV
DOI: 10.1016/j.ijpddr.2020.10.001

The iron-sulfur scaffold protein HCF101 unveils the complexity of organellar evolution in SAR, Haptista and Cryptista

Autores: Pyrih, J; Zarsky, V; Fellows, JD; Grosche, C; Wloga, D; Striepen, B; Maier, UG; Tachezy, J
Publicado en: BMC ECOLOGY AND EVOLUTION, 2021, ISSN 2730-7182
Editor: BioMed Central
DOI: 10.1186/s12862-021-01777-x

Perspectives: SARS-CoV-2 Spike Convergent Evolution as a Guide to Explore Adaptive Advantage

Autores: Zahradnik, J; Nunvar, J; Schreiber, G
Publicado en: FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY, 2022, ISSN 2235-2988
Editor: Frontiers Media S. A.
DOI: 10.3389/fcimb.2022.748948

The Virome of Healthy Honey Bee Colonies: Ubiquitous Occurrence of Known and New Viruses in Bee Populations

Autores: Kadleckova, D; Tachezy, R; Erban, T; Deboutte, W; Nunvar, J; Salakova, M; Matthijnssens, J
Publicado en: MSYSTEMS, 2022, ISSN 2379-5077
Editor: American Society for Microbiology
DOI: 10.1128/msystems.00072-22

Iron in parasitic protists - from uptake to storage and where we can interfere.

Autores: Jan Mach; Robert Sutak
Publicado en: METALLOMICS, Edición 8, 2020, ISSN 1756-5901
Editor: Royal Society of Chemistry
DOI: 10.1039/d0mt00125b

Biological Roles of Lipocalins in Chemical Communication, Reproduction, and Regulation of Microbiota

Autores: Stopkova, R; Otcenaskova, T; Matejkova, T; Kuntova, B; Stopka, P
Publicado en: FRONTIERS IN PHYSIOLOGY, 2021, ISSN 1664-042X
Editor: Frontiers Research Foundation
DOI: 10.3389/fphys.2021.740006

Comparison of plasma and cerebrospinal fluid proteomes identifies gene products guiding adult neurogenesis and neural differentiation in birds.

Autores: Eleni Voukali; Nithya Kuttiyarthu Veetil; Pavel Němec; Pavel Stopka; Michal Vinkler
Publicado en: Scientific Reports, Vol 11, Iss 1, Pp 1-16 (2021), Edición 6, 2021, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.21203/rs.3.rs-138227/v1

Flow cytometry-based study of model marine microalgal consortia revealed an ecological advantage of siderophore utilization by the dinoflagellate Amphidinium carterae

Autores: Malych, R; Stopka, P; Mach, J; Kotabova, E; Prasil, O; Sutak, R
Publicado en: COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2022, ISSN 2001-0370
Editor: Elsevier
DOI: 10.1016/j.csbj.2021.12.023

Orthohantaviruses in Reservoir and Atypical Hosts in the Czech Republic: Spillover Infection and Indication of Virus-Specific Tissue Tropism

Autores: Václav Hönig; Jan Kamiš; Aneta Maršíková; Tereza Matějková; Pavel Stopka; Anna Mácová; Daniel Růžek; Jana Kvičerová
Publicado en: MICROBIOLOGY SPECTRUM, Edición 8, 2022, ISSN 2165-0497
Editor: American Society for Microbiology
DOI: 10.1128/spectrum.01306-22

Do all mice smell the same? Chemosensory cues from inbred and wild mouse strains elicit stereotypic sensory representations in the accessory olfactory bulb.

Autores: Rohini Bansal; Maximilian Nagel; Romana Stopková; Yizhak Sofer; Tali Kimchi; Pavel Stopka; Marc Spehr; Yoram Ben-Shaul
Publicado en: BMC biology 19(1), 133 (2021). doi:10.1186/s12915-021-01064-7, Edición 3, 2021, ISSN 1741-7007
Editor: BioMed Central
DOI: 10.18154/rwth-2021-07103

The Mastigamoeba balamuthi genome and the nature of the free-living ancestor of Entamoeba

Autores: Žárský V., Klimeš V., Pačes J., Vlček Č, Hradilová M., Beneš V., Nývltová E., Hrdý I., Pyrih J, Mach J., Barlow L., Stairs C.W., Eme L., Hall N., Eliáš M., Dacks BJ, Roger A., Tachezy J.
Publicado en: Mol Biol Evol. 2021 Jun; 38(6): 2240–2259, 2021, ISSN 1537-1719
Editor: Oxford University Press, Society for Molecular Biology and Evolution
DOI: 10.1093/molbev/msab020

Oral and vaginal microbiota in selected field mice of the genus Apodemus: a wild population study

Autores: Matejkova, T; Hajkova, P; Stopkova, R; Stanko, M; Martin, JF; Kreisinger, J; Stopka, P
Publicado en: SCIENTIFIC REPORTS, 2020, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1038/s41598-020-70249-x

The response of Naegleria gruberi to oxidative stress

Autores: Malych, Ronald; Fussy, Zoltan; Zeniskova, Katerina; Arbon, Dominik; Hampl, Vladimir; Hrdy, Ivan; Sutak, Robert
Publicado en: METALLOMICS, 2022, ISSN 1756-5901
Editor: Royal Society of Chemistry
DOI: 10.1093/mtomcs/mfac009

Phenotypic and Clonal Stability of Antigen-Inexperienced Memory-like T Cells across the Genetic Background, Hygienic Status, and Aging

Autores: Moudra, A; Niederlova, V; Novotny, J; Schmiedova, L; Kubovciak, J; Matejkova, T; Drobek, A; Pribikova, M; Stopkova, R; Cizkova, D; Neuwirth, A; Michalik, J; Krizova, K; Hudcovic, T; Kolar, M; Kozakova, H; Kreisinger, J; Stopka, P; Stepanek, O
Publicado en: JOURNAL OF IMMUNOLOGY, 2021, ISSN 0022-1767
Editor: American Association of Immunologists
DOI: 10.4049/jimmunol.2001028

Giardia intestinalis mitosomes undergo synchronized fission but not fusion and are constitutively associated with the endoplasmic reticulum

Autores: Luboš Voleman, Vladimíra Najdrová, Ásgeir Ástvaldsson, Pavla Tůmová, Elin Einarsson, Zdeněk Švindrych, Guy M. Hagen, Jan Tachezy, Staffan G. Svärd, Pavel Doležal
Publicado en: BMC Biology, Edición 15/1, 2017, ISSN 1741-7007
Editor: BioMed Central
DOI: 10.1186/s12915-017-0361-y

High-Throughput Analysis of Human Cytomegalovirus Genome Diversity Highlights the Widespread Occurrence of Gene-Disrupting Mutations and Pervasive Recombination

Autores: Steven Sijmons, Kim Thys, Mirabeau Mbong Ngwese, Ellen Van Damme, Jan Dvorak, Marnix Van Loock, Guangdi Li, Ruth Tachezy, Laurent Busson, Jeroen Aerssens, Marc Van Ranst, Piet Maes
Publicado en: Journal of Virology, Edición 89/15, 2015, Página(s) 7673-7695, ISSN 0022-538X
Editor: American Society for Microbiology
DOI: 10.1128/JVI.00578-15

A Novel Protein, Ubiquitous in Marine Phytoplankton, Concentrates Iron at the Cell Surface and Facilitates Uptake

Autores: Joe Morrissey, Robert Sutak, Javier Paz-Yepes, Atsuko Tanaka, Ahmed Moustafa, Alaguraj Veluchamy, Yann Thomas, Hugo Botebol, François-Yves Bouget, Jeffrey B. McQuaid, Leila Tirichine, Andrew E. Allen, Emmanuel Lesuisse, Chris Bowler
Publicado en: Current Biology, Edición 25/3, 2015, Página(s) 364-371, ISSN 0960-9822
Editor: Cell Press
DOI: 10.1016/j.cub.2014.12.004

A Eukaryote without a Mitochondrial Organelle

Autores: Anna Karnkowska, Vojtěch Vacek, Zuzana Zubáčová, Sebastian C. Treitli, Romana Petrželková, Laura Eme, Lukáš Novák, Vojtěch Žárský, Lael D. Barlow, Emily K. Herman, Petr Soukal, Miluše Hroudová, Pavel Doležal, Courtney W. Stairs, Andrew J. Roger, Marek Eliáš, Joel B. Dacks, Čestmír Vlček, Vladimír Hampl
Publicado en: Current Biology, Edición 26/10, 2016, Página(s) 1274-1284, ISSN 0960-9822
Editor: Cell Press
DOI: 10.1016/j.cub.2016.03.053

Understanding the potential of hepatitis C virus internal ribosome entry site domains to modulate translation initiation via their structure and function

Autores: Anas Khawaja, Vaclav Vopalensky, Martin Pospisek
Publicado en: Wiley Interdisciplinary Reviews: RNA, Edición 6/2, 2015, Página(s) 211-224, ISSN 1757-7004
Editor: John Wiley and Sons Inc.
DOI: 10.1002/wrna.1268

Lateral Gene Transfer and Gene Duplication Played a Key Role in the Evolution of Mastigamoeba balamuthi Hydrogenosomes

Autores: Eva Nývltová, Courtney W. Stairs, Ivan Hrdý, Jakub Rídl, Jan Mach, Jan Pačes, Andrew J. Roger, Jan Tachezy
Publicado en: Molecular Biology and Evolution, Edición 32/4, 2015, Página(s) 1039-1055, ISSN 0737-4038
Editor: Oxford University Press
DOI: 10.1093/molbev/msu408

Horizontal transfer of whole mitochondria restores tumorigenic potential in mitochondrial DNA-deficient cancer cells

Autores: Lan-Feng Dong, Jaromira Kovarova, Martina Bajzikova, Ayenachew Bezawork-Geleta, David Svec, Berwini Endaya, Karishma Sachaphibulkij, Ana R Coelho, Natasa Sebkova, Anna Ruzickova, An S Tan, Katarina Kluckova, Kristyna Judasova, Katerina Zamecnikova, Zuzana Rychtarcikova, Vinod Gopalan, Ladislav Andera, Margarita Sobol, Bing Yan, Bijay Pattnaik, Naveen Bhatraju, Jaroslav Truksa, Pavel Stopka, Pavel
Publicado en: eLife, Edición 6, 2017, ISSN 2050-084X
Editor: eLife Sciences Publications
DOI: 10.7554/eLife.22187

Multilevel regulation of an α-arrestin by glucose depletion controls hexose transporter endocytosis

Autores: Junie Hovsepian, Quentin Defenouillère, Véronique Albanèse, Libuše Váchová, Camille Garcia, Zdena Palková, Sébastien Léon
Publicado en: The Journal of Cell Biology, Edición 216/6, 2017, Página(s) 1811-1831, ISSN 0021-9525
Editor: Rockefeller University Press
DOI: 10.1083/jcb.201610094

Yeast cell differentiation: Lessons from pathogenic and non-pathogenic yeasts

Autores: Zdena Palková, Libuše Váchová
Publicado en: Seminars in Cell & Developmental Biology, Edición 57, 2016, Página(s) 110-119, ISSN 1084-9521
Editor: Academic Press
DOI: 10.1016/j.semcdb.2016.04.006

Cyc8p and Tup1p transcription regulators antagonistically regulate Flo11p expression and complexity of yeast colony biofilms

Autores: Phu Van Nguyen, Otakar Hlaváček, Jana Maršíková, Libuše Váchová, Zdena Palková
Publicado en: PLOS Genetics, Edición 14/7, 2018, Página(s) e1007495, ISSN 1553-7404
Editor: PLOS
DOI: 10.1371/journal.pgen.1007495

Messenger RNAs of Yeast Virus-Like Elements Contain Non-templated 5′ Poly(A) Leaders, and Their Expression Is Independent of eIF4E and Pab1

Autores: Václav Vopálenský, Michal Sýkora, Tomáš Mašek, Martin Pospíšek
Publicado en: Frontiers in Microbiology, Edición 10, 2019, ISSN 1664-302X
Editor: Frontiers Media
DOI: 10.3389/fmicb.2019.02366

Copper and iron metabolism in Ostreococcus tauri – the role of phytotransferrin, plastocyanin and a chloroplast copper-transporting ATPase

Autores: Ivo Florin Scheiber, Jana Pilátová, Ronald Malych, Eva Kotabova, Matyáš Krijt, Daniel Vyoral, Jan Mach, Thibaut Léger, Jean-Michel Camadro, Ondřej Prášil, Emmanuel Lesuisse, Robert Sutak
Publicado en: Metallomics, Edición 11/10, 2019, Página(s) 1657-1666, ISSN 1756-5901
Editor: Royal Society of Chemistry
DOI: 10.1039/c9mt00078j

Anaerobic peroxisomes in Mastigamoeba balamuthi

Autores: Tien Le, Vojtěch Žárský, Eva Nývltová, Petr Rada, Karel Harant, Marie Vancová, Zdeněk Verner, Ivan Hrdý, Jan Tachezy
Publicado en: Proceedings of the National Academy of Sciences, 2019, Página(s) 201909755, ISSN 0027-8424
Editor: National Academy of Sciences
DOI: 10.1073/pnas.1909755117

Anaerobic peroxisomes in Entamoeba histolytica metabolize myo-inositol

Autores: Verner, Z; Zarsky, V; Le, T; Narayanasamy, RK; Rada, P; Rozbesky, D; Makki, A; Belisova, D; Hrdy, I; Vancova, M; Lender, C; Konig, C; Bruchhaus, I; Tachezy, J
Publicado en: PLOS PATHOGENS, 2021, ISSN 1553-7366
Editor: Public Library of Science
DOI: 10.1371/journal.ppat.1010041

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