Rezultaty Documents, reports (6) Report from Conference on Integrative Metagenomics Report from Conference on IntegrativeMetagenomics Organized summer school at BIOCEV Organized summer school at BIOCEV Report on organized courses Computational Genomics Report on organized courses Computational Genomics Organized Advanced course in metagenomics and OMICs data integration Organized Advanced course in metagenomics and OMICs data integration Dissemination and Communication strategy document prepared Dissemination and Communication strategy document prepared Report on organized courses Methods of Functional Genomics Report on organized courses Methods of FunctionalGenomics Websites, patent fillings, videos etc. (1) MiCoBion webpage developed MiCoBion webpage developed Publikacje Peer reviewed articles (31) Adaptive iron utilization compensates for the lack of an inducible uptake system in Naegleria fowleri and represents a potential target for therapeutic intervention Autorzy: Arbon, D; Zeniskova, K; Mach, J; Grechnikova, M; Malych, R; Talacko, P; Sutak, R Opublikowane w: PLOS NEGLECTED TROPICAL DISEASES, 2020, ISSN 1935-2735 Wydawca: Public Library of Science DOI: 10.1371/journal.pntd.0007759 Cytidine nucleoside analog is an effective antiviral drug against Trichomonasvirus Autorzy: Narayanasamy, RK; Rada, P; Zdrha, A; van Ranst, M; Neyts, J; Tachezy, J Opublikowane w: JOURNAL OF MICROBIOLOGY IMMUNOLOGY AND INFECTION, 2022, ISSN 1684-1182 Wydawca: Elsevier Taiwan DOI: 10.1016/j.jmii.2021.08.008 Copper Metabolism in Naegleria gruberi and Its Deadly Relative Naegleria fowleri Autorzy: Kateřina Ženíšková; Maria Grechnikova; Robert Sutak Opublikowane w: FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY, Issue 9, 2022, ISSN 2296-634X Wydawca: Frontiers Media S.A. DOI: 10.3389/fcell.2022.853463 Late Pleistocene Expansion of Small Murid Rodents across the Palearctic in Relation to the Past Environmental Changes Autorzy: Kozyra, K; Zajac, TM; Ansorge, H; Wierzbicki, H; Moska, M; Stanko, M; Stopka, P Opublikowane w: GENES, 2021, ISSN 2073-4425 Wydawca: Multidisciplinary Digital Publishing Institute (MDPI) DOI: 10.3390/genes12050642 Proteomic Analysis of Trichomonas vaginalis Phagolysosome, Lysosomal Targeting, and Unconventional Secretion of Cysteine Peptidases Autorzy: Zimmann, N; Rada, P; Zarsky, V; Smutna, T; Zahonova, K; Dacks, J; Harant, K; Hrdy, I; Tachezy, J Opublikowane w: MOLECULAR & CELLULAR PROTEOMICS, 2022, ISSN 1535-9484 Wydawca: American Society for Biochemistry and Molecular Biology DOI: 10.1016/j.mcpro.2021.100174 Copper detoxification machinery of the brain-eating amoeba Naegleria fowleri involves copper-translocating ATPase and the antioxidant system Autorzy: Grechnikova, M; Zeniskova, K; Malych, R; Mach, J; Sutak, R Opublikowane w: INTERNATIONAL JOURNAL FOR PARASITOLOGY-DRUGS AND DRUG RESISTANCE, 2020, ISSN 2211-3207 Wydawca: Elsevier BV DOI: 10.1016/j.ijpddr.2020.10.001 The iron-sulfur scaffold protein HCF101 unveils the complexity of organellar evolution in SAR, Haptista and Cryptista Autorzy: Pyrih, J; Zarsky, V; Fellows, JD; Grosche, C; Wloga, D; Striepen, B; Maier, UG; Tachezy, J Opublikowane w: BMC ECOLOGY AND EVOLUTION, 2021, ISSN 2730-7182 Wydawca: BioMed Central DOI: 10.1186/s12862-021-01777-x Perspectives: SARS-CoV-2 Spike Convergent Evolution as a Guide to Explore Adaptive Advantage Autorzy: Zahradnik, J; Nunvar, J; Schreiber, G Opublikowane w: FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY, 2022, ISSN 2235-2988 Wydawca: Frontiers Media S. A. DOI: 10.3389/fcimb.2022.748948 The Virome of Healthy Honey Bee Colonies: Ubiquitous Occurrence of Known and New Viruses in Bee Populations Autorzy: Kadleckova, D; Tachezy, R; Erban, T; Deboutte, W; Nunvar, J; Salakova, M; Matthijnssens, J Opublikowane w: MSYSTEMS, 2022, ISSN 2379-5077 Wydawca: American Society for Microbiology DOI: 10.1128/msystems.00072-22 Iron in parasitic protists - from uptake to storage and where we can interfere. Autorzy: Jan Mach; Robert Sutak Opublikowane w: METALLOMICS, Issue 8, 2020, ISSN 1756-5901 Wydawca: Royal Society of Chemistry DOI: 10.1039/d0mt00125b Flow cytometry-based study of model marine microalgal consortia revealed an ecological advantage of siderophore utilization by the dinoflagellate Amphidinium carterae Autorzy: Malych, R; Stopka, P; Mach, J; Kotabova, E; Prasil, O; Sutak, R Opublikowane w: COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2022, ISSN 2001-0370 Wydawca: Elsevier DOI: 10.1016/j.csbj.2021.12.023 Orthohantaviruses in Reservoir and Atypical Hosts in the Czech Republic: Spillover Infection and Indication of Virus-Specific Tissue Tropism Autorzy: Václav Hönig; Jan Kamiš; Aneta Maršíková; Tereza Matějková; Pavel Stopka; Anna Mácová; Daniel Růžek; Jana Kvičerová Opublikowane w: MICROBIOLOGY SPECTRUM, Issue 8, 2022, ISSN 2165-0497 Wydawca: American Society for Microbiology DOI: 10.1128/spectrum.01306-22 Do all mice smell the same? Chemosensory cues from inbred and wild mouse strains elicit stereotypic sensory representations in the accessory olfactory bulb. Autorzy: Rohini Bansal; Maximilian Nagel; Romana Stopková; Yizhak Sofer; Tali Kimchi; Pavel Stopka; Marc Spehr; Yoram Ben-Shaul Opublikowane w: BMC biology 19(1), 133 (2021). doi:10.1186/s12915-021-01064-7, Issue 3, 2021, ISSN 1741-7007 Wydawca: BioMed Central DOI: 10.18154/rwth-2021-07103 The Mastigamoeba balamuthi genome and the nature of the free-living ancestor of Entamoeba Autorzy: Žárský V., Klimeš V., Pačes J., Vlček Č, Hradilová M., Beneš V., Nývltová E., Hrdý I., Pyrih J, Mach J., Barlow L., Stairs C.W., Eme L., Hall N., Eliáš M., Dacks BJ, Roger A., Tachezy J. Opublikowane w: Mol Biol Evol. 2021 Jun; 38(6): 2240–2259, 2021, ISSN 1537-1719 Wydawca: Oxford University Press, Society for Molecular Biology and Evolution DOI: 10.1093/molbev/msab020 Oral and vaginal microbiota in selected field mice of the genus Apodemus: a wild population study Autorzy: Matejkova, T; Hajkova, P; Stopkova, R; Stanko, M; Martin, JF; Kreisinger, J; Stopka, P Opublikowane w: SCIENTIFIC REPORTS, 2020, ISSN 2045-2322 Wydawca: Nature Publishing Group DOI: 10.1038/s41598-020-70249-x The response of Naegleria gruberi to oxidative stress Autorzy: Malych, Ronald; Fussy, Zoltan; Zeniskova, Katerina; Arbon, Dominik; Hampl, Vladimir; Hrdy, Ivan; Sutak, Robert Opublikowane w: METALLOMICS, 2022, ISSN 1756-5901 Wydawca: Royal Society of Chemistry DOI: 10.1093/mtomcs/mfac009 Phenotypic and Clonal Stability of Antigen-Inexperienced Memory-like T Cells across the Genetic Background, Hygienic Status, and Aging Autorzy: Moudra, A; Niederlova, V; Novotny, J; Schmiedova, L; Kubovciak, J; Matejkova, T; Drobek, A; Pribikova, M; Stopkova, R; Cizkova, D; Neuwirth, A; Michalik, J; Krizova, K; Hudcovic, T; Kolar, M; Kozakova, H; Kreisinger, J; Stopka, P; Stepanek, O Opublikowane w: JOURNAL OF IMMUNOLOGY, 2021, ISSN 0022-1767 Wydawca: American Association of Immunologists DOI: 10.4049/jimmunol.2001028 Giardia intestinalis mitosomes undergo synchronized fission but not fusion and are constitutively associated with the endoplasmic reticulum Autorzy: Luboš Voleman, Vladimíra Najdrová, Ásgeir Ástvaldsson, Pavla Tůmová, Elin Einarsson, Zdeněk Švindrych, Guy M. Hagen, Jan Tachezy, Staffan G. Svärd, Pavel Doležal Opublikowane w: BMC Biology, Issue 15/1, 2017, ISSN 1741-7007 Wydawca: BioMed Central DOI: 10.1186/s12915-017-0361-y High-Throughput Analysis of Human Cytomegalovirus Genome Diversity Highlights the Widespread Occurrence of Gene-Disrupting Mutations and Pervasive Recombination Autorzy: Steven Sijmons, Kim Thys, Mirabeau Mbong Ngwese, Ellen Van Damme, Jan Dvorak, Marnix Van Loock, Guangdi Li, Ruth Tachezy, Laurent Busson, Jeroen Aerssens, Marc Van Ranst, Piet Maes Opublikowane w: Journal of Virology, Issue 89/15, 2015, Page(s) 7673-7695, ISSN 0022-538X Wydawca: American Society for Microbiology DOI: 10.1128/JVI.00578-15 A Novel Protein, Ubiquitous in Marine Phytoplankton, Concentrates Iron at the Cell Surface and Facilitates Uptake Autorzy: Joe Morrissey, Robert Sutak, Javier Paz-Yepes, Atsuko Tanaka, Ahmed Moustafa, Alaguraj Veluchamy, Yann Thomas, Hugo Botebol, François-Yves Bouget, Jeffrey B. McQuaid, Leila Tirichine, Andrew E. Allen, Emmanuel Lesuisse, Chris Bowler Opublikowane w: Current Biology, Issue 25/3, 2015, Page(s) 364-371, ISSN 0960-9822 Wydawca: Cell Press DOI: 10.1016/j.cub.2014.12.004 A Eukaryote without a Mitochondrial Organelle Autorzy: Anna Karnkowska, Vojtěch Vacek, Zuzana Zubáčová, Sebastian C. Treitli, Romana Petrželková, Laura Eme, Lukáš Novák, Vojtěch Žárský, Lael D. Barlow, Emily K. Herman, Petr Soukal, Miluše Hroudová, Pavel Doležal, Courtney W. Stairs, Andrew J. Roger, Marek Eliáš, Joel B. Dacks, Čestmír Vlček, Vladimír Hampl Opublikowane w: Current Biology, Issue 26/10, 2016, Page(s) 1274-1284, ISSN 0960-9822 Wydawca: Cell Press DOI: 10.1016/j.cub.2016.03.053 Understanding the potential of hepatitis C virus internal ribosome entry site domains to modulate translation initiation via their structure and function Autorzy: Anas Khawaja, Vaclav Vopalensky, Martin Pospisek Opublikowane w: Wiley Interdisciplinary Reviews: RNA, Issue 6/2, 2015, Page(s) 211-224, ISSN 1757-7004 Wydawca: John Wiley and Sons Inc. DOI: 10.1002/wrna.1268 Lateral Gene Transfer and Gene Duplication Played a Key Role in the Evolution of Mastigamoeba balamuthi Hydrogenosomes Autorzy: Eva Nývltová, Courtney W. Stairs, Ivan Hrdý, Jakub Rídl, Jan Mach, Jan Pačes, Andrew J. Roger, Jan Tachezy Opublikowane w: Molecular Biology and Evolution, Issue 32/4, 2015, Page(s) 1039-1055, ISSN 0737-4038 Wydawca: Oxford University Press DOI: 10.1093/molbev/msu408 Horizontal transfer of whole mitochondria restores tumorigenic potential in mitochondrial DNA-deficient cancer cells Autorzy: Lan-Feng Dong, Jaromira Kovarova, Martina Bajzikova, Ayenachew Bezawork-Geleta, David Svec, Berwini Endaya, Karishma Sachaphibulkij, Ana R Coelho, Natasa Sebkova, Anna Ruzickova, An S Tan, Katarina Kluckova, Kristyna Judasova, Katerina Zamecnikova, Zuzana Rychtarcikova, Vinod Gopalan, Ladislav Andera, Margarita Sobol, Bing Yan, Bijay Pattnaik, Naveen Bhatraju, Jaroslav Truksa, Pavel Stopka, Pavel Opublikowane w: eLife, Issue 6, 2017, ISSN 2050-084X Wydawca: eLife Sciences Publications DOI: 10.7554/eLife.22187 Multilevel regulation of an α-arrestin by glucose depletion controls hexose transporter endocytosis Autorzy: Junie Hovsepian, Quentin Defenouillère, Véronique Albanèse, Libuše Váchová, Camille Garcia, Zdena Palková, Sébastien Léon Opublikowane w: The Journal of Cell Biology, Issue 216/6, 2017, Page(s) 1811-1831, ISSN 0021-9525 Wydawca: Rockefeller University Press DOI: 10.1083/jcb.201610094 Yeast cell differentiation: Lessons from pathogenic and non-pathogenic yeasts Autorzy: Zdena Palková, Libuše Váchová Opublikowane w: Seminars in Cell & Developmental Biology, Issue 57, 2016, Page(s) 110-119, ISSN 1084-9521 Wydawca: Academic Press DOI: 10.1016/j.semcdb.2016.04.006 Cyc8p and Tup1p transcription regulators antagonistically regulate Flo11p expression and complexity of yeast colony biofilms Autorzy: Phu Van Nguyen, Otakar Hlaváček, Jana Maršíková, Libuše Váchová, Zdena Palková Opublikowane w: PLOS Genetics, Issue 14/7, 2018, Page(s) e1007495, ISSN 1553-7404 Wydawca: PLOS DOI: 10.1371/journal.pgen.1007495 Messenger RNAs of Yeast Virus-Like Elements Contain Non-templated 5′ Poly(A) Leaders, and Their Expression Is Independent of eIF4E and Pab1 Autorzy: Václav Vopálenský, Michal Sýkora, Tomáš Mašek, Martin Pospíšek Opublikowane w: Frontiers in Microbiology, Issue 10, 2019, ISSN 1664-302X Wydawca: Frontiers Media DOI: 10.3389/fmicb.2019.02366 Copper and iron metabolism in Ostreococcus tauri – the role of phytotransferrin, plastocyanin and a chloroplast copper-transporting ATPase Autorzy: Ivo Florin Scheiber, Jana Pilátová, Ronald Malych, Eva Kotabova, Matyáš Krijt, Daniel Vyoral, Jan Mach, Thibaut Léger, Jean-Michel Camadro, Ondřej Prášil, Emmanuel Lesuisse, Robert Sutak Opublikowane w: Metallomics, Issue 11/10, 2019, Page(s) 1657-1666, ISSN 1756-5901 Wydawca: Royal Society of Chemistry DOI: 10.1039/c9mt00078j Anaerobic peroxisomes in Mastigamoeba balamuthi Autorzy: Tien Le, Vojtěch Žárský, Eva Nývltová, Petr Rada, Karel Harant, Marie Vancová, Zdeněk Verner, Ivan Hrdý, Jan Tachezy Opublikowane w: Proceedings of the National Academy of Sciences, 2019, Page(s) 201909755, ISSN 0027-8424 Wydawca: National Academy of Sciences DOI: 10.1073/pnas.1909755117 Anaerobic peroxisomes in Entamoeba histolytica metabolize myo-inositol Autorzy: Verner, Z; Zarsky, V; Le, T; Narayanasamy, RK; Rada, P; Rozbesky, D; Makki, A; Belisova, D; Hrdy, I; Vancova, M; Lender, C; Konig, C; Bruchhaus, I; Tachezy, J Opublikowane w: PLOS PATHOGENS, 2021, ISSN 1553-7366 Wydawca: Public Library of Science DOI: 10.1371/journal.ppat.1010041 Wyszukiwanie danych OpenAIRE... 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