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Decoding Context-Dependent Genetic Networks in vivo

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Publications

Multiplexed conditional genome editing with Cas12a in Drosophila

Author(s): Fillip Port, Maja Starostecka, Michael Boutros
Published in: Proceedings of the National Academy of Sciences, 117/37, 2020, Page(s) 22890-22899, ISSN 0027-8424
Publisher: National Academy of Sciences
DOI: 10.1073/pnas.2004655117

Tissue-Specific CRISPR-Cas9 Screening in Drosophila

Author(s): Fillip Port, Michael Boutros
Published in: Methods in Molecular Biology, 19406029, 2022, Page(s) 157-176, ISSN 1940-6029
Publisher: Springer Nature
DOI: 10.1007/978-1-0716-2541-5_7

The Role of Organelles in Intestinal Function, Physiology, and Disease

Author(s): Siamak Redhai, Michael Boutros
Published in: Trends in Cell Biology, 09628924, 2021, Page(s) 485-499, ISSN 0962-8924
Publisher: Elsevier BV
DOI: 10.1016/j.tcb.2021.01.003

CellRegMap: a statistical framework for mapping context-specific regulatory variants using scRNA-seq

Author(s): Anna S E Cuomo, Tobias Heinen, Danai Vagiaki, Danilo Horta, John C Marioni, Oliver Stegle
Published in: Molecular Systems Biology, 17444292, 2022, Page(s) e10663, ISSN 1744-4292
Publisher: Nature Publishing Group
DOI: 10.15252/msb.202110663

A large-scale resource for tissue-specific CRISPR mutagenesis in Drosophila

Author(s): Fillip Port, Claudia Strein, Mona Stricker, Benedikt Rauscher, Florian Heigwer, Jun Zhou, Celine Beyersdörffer, Jana Frei, Amy Hess, Katharina Kern, Laura Lange, Nora Langner, Roberta Malamud, Bojana Pavlović, Kristin Rädecke, Lukas Schmitt, Lukas Voos, Erica Valentini, Michael Boutros
Published in: eLife, 9, 2020, ISSN 2050-084X
Publisher: eLife Sciences Publications
DOI: 10.7554/elife.53865

Metabolic balance in colorectal cancer is maintained by optimal Wnt signaling levels

Author(s): Katharina Imkeller; Giulia Ambrosi; Nancy Klemm; Ainara Claveras Cabezudo; Luisa Henkel; Wolfgang Huber; Michael Boutros
Published in: Molecular Systems Biology, 17444292, 2022, Page(s) e10874, ISSN 1744-4292
Publisher: Nature Publishing Group
DOI: 10.15252/msb.202110874

Conditional CRISPR-Cas Genome Editing in Drosophila to Generate Intestinal Tumors

Author(s): Shivohum Bahuguna, Siamak Redhai, Jun Zhou, Tianyu Wang, Fillip Port, Michael Boutros
Published in: Cells, 20734409, 2021, Page(s) 3156, ISSN 2073-4409
Publisher: MDPI
DOI: 10.3390/cells10113156

Identifying temporal and spatial patterns of variation from multimodal data using MEFISTO

Author(s): Britta Velten; Jana M. Braunger; Ricard Argelaguet; Damien Arnol; Jakob Wirbel; Danila Bredikhin; Georg Zeller; Oliver Stegle
Published in: Nature Methods, 15487105, 2022, Page(s) 179-186, ISSN 1548-7105
Publisher: Springer Nature
DOI: 10.1038/s41592-021-01343-9

glmGamPoi: fitting Gamma-Poisson generalized linear models on single cell count data

Author(s): Constantin Ahlmann-Eltze, Wolfgang Huber
Published in: Bioinformatics, 36/24, 2020, Page(s) 5701-5702, ISSN 1367-4803
Publisher: Oxford University Press
DOI: 10.1093/bioinformatics/btaa1009

Transcriptional landscape of rice roots at the single-cell resolution

Author(s): Qing Liu, Zhe Liang, Dan Feng, Sanjie Jiang, Yifan Wang, Zhuoying Du, Ruoxi Li, Guihua Hu, Pingxian Zhang, Yanfei Ma, Jan U. Lohmann, Xiaofeng Gu
Published in: Molecular Plant, 14/3, 2021, Page(s) 384-394, ISSN 1674-2052
Publisher: Oxford University Press
DOI: 10.1016/j.molp.2020.12.014