Project description
A common transcription factor modulates outcomes whether one or many options exist
During embryonic development, cells differentiate to take on specific identities. Pluripotent embryonic stem cells can give rise to all the cell types that make up an organism. Unipotent primordial germ cells can give rise to only one type of cell, gametes. Interestingly, the transcription factor OCT4 plays an important role in genetic regulation of both types of stem cells. The EU-funded OCTOBER project is investigating the hypothesis that OCT4 targets different regulatory elements in the two cell lines. Scientists will identify the genome-wide OCT4-bound regulatory components and, using bioinformatics, determine the genes associated with these elements. High-tech genomics tools will help the team elucidate the mechanisms of OCT4 action in these two very different types of stem cells.
Objective
The development of an organism requires the fine-tuned balance between self-renewal and differentiation of pluripotent cells. Pluripotency is controlled by a group of transcription factors (TFs) that constitute the Pluripotency Gene Regulatory Network (PGRN). OCT4 is a core component of the PGRN and is required to specify pluripotency in vivo and to maintain pluripotency in vitro in embryonic stem cells (ESCs). OCT4 is also required for survival of unipotent primordial germ cells (PGCs). However, it is still not clear how a pluripotency-associated TF like OCT4 can also be required in both ESCs and in more differentiated cells. In this proposal, I will address the hypothesis that OCT4 function in ESCs and PGCs requires the targeting of distinct cis-regulatory elements (CREs - enhancers and promoters) in the two systems. By comparing the genome-wide distribution of OCT4 in ESCs and PGCs, I will identify the OCT4-bound CREs specific for each cell type. Using bioinformatic tools, I will identify genes associated with these elements that distinguish between the transcriptional networks regulated by OCT4 in each cell type. In ESCs a decrease of OCT4 expression correlates with an increase in OCT4 binding to chromatin. To unveil the mechanisms underpinning this phenotype, I will perturb the OCT4 concentration in ESCs by combining targeted genome editing and protein degradation assays. I will extend studies of altering OCT4 concentration to PGCs using similar approaches. In addition, I will assess the hypothesis that physical interactions between CREs play a defining role in cell-specific gene expression. I will use 3D genome assays to determine whether the context-dependent function of OCT4 in ESCs and PGCs depends upon the regulation of distinct interactions between different sets of CREs in each cell type. Using cutting-edge assays, this action will shed light on the dual activity of OCT4 in ESCs and PGCs, providing new insights into stem cell biology.
Fields of science (EuroSciVoc)
CORDIS classifies projects with EuroSciVoc, a multilingual taxonomy of fields of science, through a semi-automatic process based on NLP techniques. See: The European Science Vocabulary.
CORDIS classifies projects with EuroSciVoc, a multilingual taxonomy of fields of science, through a semi-automatic process based on NLP techniques. See: The European Science Vocabulary.
- medical and health sciences medical biotechnology genetic engineering gene therapy
- natural sciences biological sciences biochemistry biomolecules proteins
- natural sciences biological sciences cell biology
- medical and health sciences medical biotechnology cells technologies stem cells
- natural sciences biological sciences genetics genomes
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Programme(s)
Multi-annual funding programmes that define the EU’s priorities for research and innovation.
Multi-annual funding programmes that define the EU’s priorities for research and innovation.
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H2020-EU.1.3. - EXCELLENT SCIENCE - Marie Skłodowska-Curie Actions
MAIN PROGRAMME
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H2020-EU.1.3.2. - Nurturing excellence by means of cross-border and cross-sector mobility
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Topic(s)
Calls for proposals are divided into topics. A topic defines a specific subject or area for which applicants can submit proposals. The description of a topic comprises its specific scope and the expected impact of the funded project.
Calls for proposals are divided into topics. A topic defines a specific subject or area for which applicants can submit proposals. The description of a topic comprises its specific scope and the expected impact of the funded project.
Funding Scheme
Funding scheme (or “Type of Action”) inside a programme with common features. It specifies: the scope of what is funded; the reimbursement rate; specific evaluation criteria to qualify for funding; and the use of simplified forms of costs like lump sums.
Funding scheme (or “Type of Action”) inside a programme with common features. It specifies: the scope of what is funded; the reimbursement rate; specific evaluation criteria to qualify for funding; and the use of simplified forms of costs like lump sums.
MSCA-IF-EF-RI - RI – Reintegration panel
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Call for proposal
Procedure for inviting applicants to submit project proposals, with the aim of receiving EU funding.
Procedure for inviting applicants to submit project proposals, with the aim of receiving EU funding.
(opens in new window) H2020-MSCA-IF-2018
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Net EU financial contribution. The sum of money that the participant receives, deducted by the EU contribution to its linked third party. It considers the distribution of the EU financial contribution between direct beneficiaries of the project and other types of participants, like third-party participants.
EH8 9YL Edinburgh
United Kingdom
The total costs incurred by this organisation to participate in the project, including direct and indirect costs. This amount is a subset of the overall project budget.