Project description DEENESFRITPL Novel multi-RNA binding tool to boost synthetic biology research In a lock-and-key fashion, RNA-binding proteins bind RNA at one or more RNA-binding domains to modulate gene expression by altering RNA processing and translation. Hundreds of 'keys' have been discovered over the years and recent studies have revealed even more. Characterising their interaction and subsequent biological implications is a huge area of research expected to reveal previously unidentified structures and functions for numerous applications. CARBP is supporting that effort with software to quickly and intelligently design RNA-binding domains and create synthetic DNA libraries. The software will be part of a suite of web-based tools that could tremendously increase the rate of discovery, depth of understanding and ultimate utility of novel molecules involved in gene expression. Show the project objective Hide the project objective Objective DNA synthesis technology has greatly developed over recent years, serving a growing multi-billion synthetic DNA market. Synthetic DNA is used in projects that optimize reagents, chemicals, crops and other organisms, in projects seeking to increase the manufacturing efficiency for the above, as well as in studies of molecular regulation and other cellular processes. The latter is the focus of the MRG-GRammar H2020 FET project.As the market and application range for synthetic DNA expand a need arises to test and quality control raw synthetic nucleic acids as well as products built upon such reagents. We have developed a prototype software tool for assessing quality parameters in synthetic DNA libraries and used it in several projects in the framework of MRG-GRammarWe propose to productize this prototype into a stable version that will be availed to a broader synthetic biology community. Our proposed product, CARBP, is a software system that enables design of RNA binding protein binding sites cassettes for various applications in biological imaging and synthetic biology. Requested funding will be used to improve usability and user interface, to expand the implementation of analysis and statistical tools, to produce a stable version available to the scientific community and to commercial entities and, finally, to investigate potential sustainable mechanisms for supporting continued service, including commercial or service models. CARBP will form part of a suite of interactive web-based tools whose purpose will be to accelerate the development of the nascent synthetic biology industry sector, by making advanced molecular technologies available to various users at a push of a button. Fields of science natural sciencesbiological sciencesbiochemistrybiomoleculesnucleic acidsnatural sciencesbiological sciencessynthetic biologynatural sciencesbiological sciencesgeneticsDNAnatural sciencescomputer and information sciencessoftwaresoftware applicationssystem softwarenatural sciencesbiological sciencesbiochemistrybiomoleculesproteins Programme(s) H2020-EU.1.2. - EXCELLENT SCIENCE - Future and Emerging Technologies (FET) Main Programme H2020-EU.1.2.1. - FET Open Topic(s) FETOPEN-03-2018-2019-2020 - FET Innovation Launchpad Call for proposal H2020-FETOPEN-2018-2020 See other projects for this call Sub call H2020-FETOPEN-2018-2019-2020-03 Funding Scheme CSA - Coordination and support action Coordinator TECHNION - ISRAEL INSTITUTE OF TECHNOLOGY Net EU contribution € 68 750,00 Address Senate building technion city 32000 Haifa Israel See on map Activity type Higher or Secondary Education Establishments Links Contact the organisation Opens in new window Website Opens in new window Participation in EU R&I programmes Opens in new window HORIZON collaboration network Opens in new window Other funding € 0,00 Participants (1) Sort alphabetically Sort by Net EU contribution Expand all Collapse all REICHMAN UNIVERSITY Israel Net EU contribution € 31 250,00 Address 8 hauniversita st 4610101 Herzliya See on map Activity type Higher or Secondary Education Establishments Links Contact the organisation Opens in new window Website Opens in new window Participation in EU R&I programmes Opens in new window HORIZON collaboration network Opens in new window Other funding € 0,00
