Terrestrialization: Stress Signalling Dynamics in the Algal Progenitors of Land Plants

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Pubblicazioni

Submergence of the filamentous Zygnematophyceae Mougeotia induces differential gene expression patterns associated with core metabolism and photosynthesis

Autori: Janine M.R. Fürst-Jansen; Sophie de Vries; Maike Lorenz; Klaus von Schwartzenberg; John M. Archibald; Jan de Vries
Pubblicato in: Protoplasma, 2021, ISSN 0033-183X
Editore: Springer Verlag
DOI: 10.1007/s00709-021-01730-1

Divergent responses in desiccation experiments in two ecophysiologically different Zygnematophyceae

Autori: Tim P. Rieseberg; Armin Dadras; Luisa I. N. Bergschmidt; Maaike J. Bierenbroodspot; Janine M. R. Fürst‐Jansen; Iker Irisarri; Sophie de Vries; Tatyana Darienko; Jan de Vries
Pubblicato in: Crossref, Numero 2, 2023, ISSN 0031-9317
Editore: Blackwell Publishing Inc.
DOI: 10.1111/ppl.14056

Divergent evolution of the alcohol‐forming pathway of wax biosynthesis among bryophytes

Autori: Alisa Keyl; Cornelia Herrfurth; Garima Pandey; Ryeo Jin Kim; Lina Helwig; Tegan M. Haslam; Sophie de Vries; Jan de Vries; Nora Gutsche; Sabine Zachgo; Mi Chung Suh; Ljerka Kunst; Ivo Feussner
Pubblicato in: Crossref, Numero 13, 2024, ISSN 0028-646X
Editore: Blackwell Publishing Inc.
DOI: 10.1111/nph.19687

Evolutionary assembly of the plant terrestrialization toolkit from protein domains

Autori: Amra Dhabalia Ashok, Sophie de Vries, Tatyana Darienko, Iker Irisarri, Jan de Vries
Pubblicato in: Proceedings of the Royal Society B: Biological Sciences, Numero 291, 2024, ISSN 0962-8452
Editore: Royal Society of London
DOI: 10.1098/rspb.2024.0985

Recurrent evolution of seaweed body plan complexity among photosynthetic eukaryotes

Autori: Elisa S. Goldbecker, Iker Irisarri, Jan de Vries
Pubblicato in: Molecular Plant, Numero 17, 2024, Pagina/e 999-1001, ISSN 1674-2052
Editore: Oxford University Press
DOI: 10.1016/j.molp.2024.06.001

Ties between Stress and Lipid Droplets Pre-date Seeds

Autori: Jan de Vries, Till Ischebeck
Pubblicato in: Trends in Plant Science, 2020, ISSN 1360-1385
Editore: Elsevier BV
DOI: 10.1016/j.tplants.2020.07.017

Evolution of plant metabolism: the state-of-the-art

Autori: Alisdair R. Fernie, Sophie de Vries, Jan de Vries
Pubblicato in: Philosophical Transactions of the Royal Society B: Biological Sciences, Numero 379, 2024, ISSN 0962-8436
Editore: Royal Society of London
DOI: 10.1098/rstb.2023.0347

Species delimitation 4.0: integrative taxonomy meets artificial intelligence

Autori: Kevin Karbstein, Lara Kösters, Ladislav Hodač, Martin Hofmann, Elvira Hörandl, Salvatore Tomasello, Natascha D. Wagner, Brent C. Emerson, Dirk C. Albach, Stefan Scheu, Sven Bradler, Jan de Vries, Iker Irisarri, He Li, Pamela Soltis, Patrick Mäder, Jana Wäldchen
Pubblicato in: Trends in Ecology & Evolution, Numero 39, 2024, Pagina/e 771-784, ISSN 0169-5347
Editore: Elsevier BV
DOI: 10.1016/j.tree.2023.11.002

Evolutionary genomic insights into cyanobacterial symbioses in plants

Autori: Jan De Vries; Sophie De Vries
Pubblicato in: Crossref, Numero 1, 2022, ISSN 2632-8828
Editore: Cambridge University Press
DOI: 10.1017/qpb.2022.3

Underwater CAM photosynthesis elucidated by Isoetes genome

Autori: David Wickell, Li-Yaung Kuo, Hsiao-Pei Yang, Amra Dhabalia Ashok, Iker Irisarri, Armin Dadras, Sophie de Vries, Jan de Vries, Yao-Moan Huang, Zheng Li, Michael S. Barker, Nolan T. Hartwick, Todd P. Michael, Fay-Wei Li
Pubblicato in: Nature Communications, Numero 12/1, 2021, ISSN 2041-1723
Editore: Nature Publishing Group
DOI: 10.1038/s41467-021-26644-7

Environmental gradients reveal stress hubs pre-dating plant terrestrialization

Autori: Armin Dadras; Janine M. R. Fürst-Jansen; Tatyana Darienko; Denis Krone; Patricia Scholz; Siqi Sun; Cornelia Herrfurth; Tim P. Rieseberg; Iker Irisarri; Rasmus Steinkamp; Maike Hansen; Henrik Buschmann; Oliver Valerius; Gerhard H. Braus; Ute Hoecker; Ivo Feussner; Marek Mutwil; Till Ischebeck; Sophie de Vries; Maike Lorenz; Jan de Vries
Pubblicato in: Crossref, Numero 5, 2023, ISSN 2055-0278
Editore: Nature Portfolio
DOI: 10.1038/s41477-023-01491-0

Genomes of multicellular algal sisters to land plants illuminate signaling network evolution.

Autori: Xuehuan Feng, Jinfang Zheng, Iker Irisarri, Huihui Yu, Bo Zheng, Zahin Ali, Sophie de Vries, Jean Keller, Janine M. R. Fürst-Jansen, Armin Dadras, Jaccoline M. S. Zegers, Tim P. Rieseberg, Amra Dhabalia Ashok, Tatyana Darienko, Maaike J. Bierenbroodspot, Lydia Gramzow, Romy Petroll, Fabian B. Haas, Noe Fernandez-Pozo, Orestis Nousias, Tang Li, Elisabeth Fitzek, W. Scott Grayburn, Nina Rittmeier,
Pubblicato in: Nature Genetics, 2024, ISSN 1061-4036
Editore: Nature Publishing Group
DOI: 10.1038/s41588-024-01737-3

Accessible versatility underpins the deep evolution of plant specialized metabolism

Autori: Armin Dadras; Tim P. Rieseberg; Jaccoline M. S. Zegers; Janine M. R. Fürst-Jansen; Iker Irisarri; Jan de Vries; Sophie de Vries
Pubblicato in: Crossref, Numero 7, 2023, ISSN 1568-7767
Editore: Kluwer Academic Publishers
DOI: 10.1007/s11101-023-09863-2

A phylogenomically informed five-order system for the closest relatives of land plants

Autori: Sebastian Hess, Shelby K Williams, Anna Busch, Iker Irisarri, Charles F Delwiche, Sophie de Vries, Tatyana Darienko, Andrew J Roger, John M Archibald, Henri Buschmann, Klaus von Schwartzenberg, Jan de Vries
Pubblicato in: Current Biology, 2022, ISSN 0960-9822
Editore: Cell Press
DOI: 10.1016/j.cub.2022.08.022

The evolution of the phenylpropanoid pathway entailed pronounced radiations and divergences of enzyme families

Autori: Sophie de Vries, Janine MR Fürst‐Jansen, Iker Irisarri, Amra Dhabalia Ashok, Till Ischebeck, Kirstin Feussner, Ilka N Abreu, Maike Petersen, Ivo Feussner, Jan de Vries
Pubblicato in: The Plant Journal, 2021, ISSN 0960-7412
Editore: Blackwell Publishing Inc.
DOI: 10.1111/tpj.15387

Proteome plasticity during <i>Physcomitrium patens</i> spore germination – from the desiccated phase to heterotrophic growth and reconstitution of photoautotrophy

Autori: Lea Hembach; Philipp W. Niemeyer; Kerstin Schmitt; Jaccoline M. S. Zegers; Patricia Scholz; Dennis Brandt; Janis J. Dabisch; Oliver Valerius; Gerhard H. Braus; Markus Schwarzländer; Jan de Vries; Stefan A. Rensing; Till Ischebeck
Pubblicato in: "Plant Journal, 2023, 117 (5), pp.1466-1486. ⟨10.1111/tpj.16574⟩", Numero 1, 2024, ISSN 0960-7412
Editore: Blackwell Publishing Inc.
DOI: 10.1111/tpj.16574

Early Diversification of Membrane Intrinsic Proteins (MIPs) in Eukaryotes

Autori: Iker Irisarri, Héctor Lorente-Martínez, Jürgen F H Strassert, Ainhoa Agorreta, Rafael Zardoya, Diego San Mauro, Jan de Vries
Pubblicato in: Genome Biology and Evolution, Numero 16, 2024, ISSN 1759-6653
Editore: Oxford University Press
DOI: 10.1093/gbe/evae164

LDIP Cooperates with SEIPIN and LDAP to Facilitate Lipid Droplet Biogenesis in Arabidopsis

Autori: Michal Pyc, Satinder K Gidda, Damien Seay, Nicolas Esnay, Franziska K Kretzschmar, Yingqi Cai, Nathan M Doner, Michael S Greer, J Joe Hull, Denis Coulon, Claire Bréhélin, Olga Yurchenko, Jan de Vries, Oliver Valerius, Gerhard H Braus, Till Ischebeck, Kent D Chapman, John M Dyer, Robert T Mullen
Pubblicato in: The Plant Cell, 2021, ISSN 1532-298X
Editore: Oxford University Press
DOI: 10.1093/plcell/koab179

Unexpected cryptic species among streptophyte algae most distant to land plants

Autori: Iker Irisarri, Tatyana Darienko, Thomas Pröschold, Janine M. R. Fürst-Jansen, Mahwash Jamy, Jan de Vries
Pubblicato in: Proceedings of the Royal Society B: Biological Sciences, Numero 288/1963, 2021, ISSN 0962-8452
Editore: Royal Society of London
DOI: 10.1098/rspb.2021.2168

Plant genome sequence assembly in the era of long reads: Progress, challenges and future directions

Autori: Boas Pucker, Iker Irisarri, Jan de Vries, Bo Xu
Pubblicato in: Quantitative Plant Biology, 2022, ISSN 2632-8828
Editore: Cambridge University Press
DOI: 10.1017/qpb.2021.18

Punctuated ancestral gene gains in streptophyte evolution

Autori: Iker Irisarri, Jan de Vries
Pubblicato in: Molecular Plant, 2022, ISSN 1674-2052
Editore: Oxford University Press
DOI: 10.1016/j.molp.2022.03.010

A Global Survey of Carbohydrate Esterase Families 1 and 10 in Oomycetes

Autori: Sophie de Vries, Jan de Vries
Pubblicato in: Frontiers in Genetics, Numero 11, 2020, ISSN 1664-8021
Editore: Frontiers Media
DOI: 10.3389/fgene.2020.00756

An ancient route towards salicylic acid and its implications for the perpetual <i>Trichormus–Azolla</i> symbiosis

Autori: Sophie de Vries; Cornelia Herrfurth; Fay‐Wei Li; Ivo Feussner; Jan de Vries
Pubblicato in: Crossref, Numero 6, 2023, ISSN 0140-7791
Editore: Blackwell Publishing Inc.
DOI: 10.1111/pce.14659

Plant terrestrialization: an environmental pull on the evolution of multi-sourced streptophyte phenolics

Autori: Cäcilia F. Kunz, Sophie de Vries, Jan de Vries
Pubblicato in: Philosophical Transactions of the Royal Society B: Biological Sciences, Numero 379, 2024, ISSN 0962-8436
Editore: Royal Society of London
DOI: 10.1098/rstb.2023.0358

Genome evolution: Zygnematophyceae on ice

Autori: Cäcilia F. Kunz, Elisa S. Goldbecker, Tatyana Darienko, Jan de Vries
Pubblicato in: New Phytologist, Numero 244, 2024, Pagina/e 1125-1127, ISSN 0028-646X
Editore: Blackwell Publishing Inc.
DOI: 10.1111/nph.19960

The genome of the venomous snail Lautoconus ventricosus sheds light on the origin of conotoxin diversity

Autori: José Ramón Pardos-Blas, Iker Irisarri, Samuel Abalde, Carlos M L Afonso, Manuel J Tenorio, Rafael Zardoya
Pubblicato in: GigaScience, Numero 10/5, 2021, ISSN 2047-217X
Editore: Oxford University Press
DOI: 10.1093/gigascience/giab037

A seed‐like proteome in oil‐rich tubers

Autori: Philipp William Niemeyer; Iker Irisarri; Patricia Scholz; Kerstin Schmitt; Oliver Valerius; Gerhard H. Braus; Cornelia Herrfurth; Ivo Feussner; Shrikant Sharma; Anders S. Carlsson; Jan de Vries; Per Hofvander; Till Ischebeck
Pubblicato in: Crossref, Numero 1, 2022, ISSN 1365-313X
Editore: John Wiley & Sons Ltd
DOI: 10.1111/tpj.15964

A ligand-independent origin of abscisic acid perception

Autori: Yufei Sun, Ben Harpazi, Akila Wijerathna-Yapa, Ebe Merilo, Jan de Vries, Daphna Michaeli, Maayan Gal, Andrew C. Cuming, Hannes Kollist, Assaf Mosquna
Pubblicato in: Proceedings of the National Academy of Sciences, Numero 116/49, 2019, Pagina/e 24892-24899, ISSN 0027-8424
Editore: National Academy of Sciences
DOI: 10.1073/pnas.1914480116

Evo-physio: on stress responses and the earliest land plants

Autori: Janine M R Fürst-Jansen, Sophie de Vries, Jan de Vries
Pubblicato in: Journal of Experimental Botany, 2020, ISSN 0022-0957
Editore: Oxford University Press
DOI: 10.1093/jxb/eraa007

Anthoceros genomes illuminate the origin of land plants and the unique biology of hornworts

Autori: Fay-Wei Li, Tomoaki Nishiyama, Manuel Waller, Eftychios Frangedakis, Jean Keller, Zheng Li, Noe Fernandez-Pozo, Michael S. Barker, Tom Bennett, Miguel A. Blázquez, Shifeng Cheng, Andrew C. Cuming, Jan de Vries, Sophie de Vries, Pierre-Marc Delaux, Issa S. Diop, C. Jill Harrison, Duncan Hauser, Jorge Hernández-García, Alexander Kirbis, John C. Meeks, Isabel Monte, Sumanth K. Mutte, Anna Neubauer
Pubblicato in: Nature Plants, Numero 6/3, 2020, Pagina/e 259-272, ISSN 2055-0278
Editore: Springer Nature
DOI: 10.1038/s41477-020-0618-2

Heat stress response in the closest algal relatives of land plants reveals conserved stress signaling circuits

Autori: Jan de Vries, Sophie de Vries, Bruce A. Curtis, Hong Zhou, Susanne Penny, Kirstin Feussner, Devanand M. Pinto, Michael Steinert, Alejandro Cohen, Klaus von Schwartzenberg, John M. Archibald
Pubblicato in: The Plant Journal, 2020, ISSN 0960-7412
Editore: Blackwell Publishing Inc.
DOI: 10.1111/tpj.14782

Gene gains paved the path to land

Autori: Jan de Vries, Stefan A. Rensing
Pubblicato in: Nature Plants, Numero 6/1, 2020, Pagina/e 7-8, ISSN 2055-0278
Editore: Springer Nature
DOI: 10.1038/s41477-019-0579-5

Phylogeny and evolution of streptophyte algae

Autori: Maaike Bierenbroodspot, Thomas Pröschold, Janine M R Fürst-Jansen, Sophie de Vries, Iker Irisarri, Tatyana Darienko, Jan de Vries
Pubblicato in: Annals of Botany, 2024, ISSN 0305-7364
Editore: Oxford University Press
DOI: 10.1093/aob/mcae091

Chloroplast ion homeostasis – what do we know and where should we go?

Autori: Hans‐Henning Kunz; Ute Armbruster; Susanne Mühlbauer; Jan de Vries; Geoffry A. Davis
Pubblicato in: Crossref, Numero 1, 2024, ISSN 0028-646X
Editore: Blackwell Publishing Inc.
DOI: 10.1111/nph.19661

Fern cell walls and the evolution of arabinogalactan-proteins in streptophytes

Autori: Mueller, Kim-Kristine; Pfeifer, Lukas; Schuldt, Lina; Szövényi, Péter; de Vries, Sophie; de Vries, Jan; Johnson, Kim L; Classen, Birgit
Pubblicato in: The Plant Journal, 114 (4), Numero 5, 2023, ISSN 0960-7412
Editore: Blackwell Publishing Inc.
DOI: 10.1111/tpj.16178

Crossroads in the evolution of plant specialized metabolism

Autori: Tim P. Rieseberg, Armin Dadras, Janine M.R. Fürst-Jansen, Amra Dhabalia Ashok, Tatyana Darienko, Sophie de Vries, Iker Irisarri, Jan de Vries
Pubblicato in: Seminars in Cell & Developmental Biology, 2022, ISSN 1084-9521
Editore: Academic Press
DOI: 10.1016/j.semcdb.2022.03.004

Constitutive activation of ABA receptors in Arabidopsis reveals unique regulatory circuitries

Autori: Oded Pri-Tal, Yufei Sun, Armin Dadras, Janine M. R. Fürst-Jansen, Gil Zimran, Daphna Michaeli, Akila Wijerathna-Yapa, Michal Shpilman, Ebe Merilo, Dmitry Yarmolinsky, Idan Efroni, Jan de Vries, Hannes Kollist, Assaf Mosquna
Pubblicato in: New Phytologist, 2023, ISSN 0028-646X
Editore: Blackwell Publishing Inc.
DOI: 10.1111/nph.19363

Evolution of ethylene as an abiotic stress hormone in streptophytes

Autori: Bram Van de Poel, Jan de Vries
Pubblicato in: Environmental and Experimental Botany, 2023, ISSN 0098-8472
Editore: Elsevier BV
DOI: 10.1016/j.envexpbot.2023.105456

Two plastid POLLUX ion channel-like proteins are required for stress-triggered stromal Ca2+ release

Autori: Carsten Völkner, Lorenz Josef Holzner, Philip M Day, Amra Dhabalia Ashok, Jan de Vries, Bettina Bölter, Hans-Henning Kunz
Pubblicato in: Plant Physiology, 2021, ISSN 1532-2548
Editore: Oxford University Press
DOI: 10.1093/plphys/kiab424

Conserved carotenoid pigmentation in reproductive organs of Charophyceae

Autori: Tim P. Rieseberg, Anja Holzhausen, Maaike J. Bierenbroodspot, Wanchen Zhang, Ilka N. Abreu, Jan de Vries
Pubblicato in: Philosophical Transactions of the Royal Society B: Biological Sciences, Numero 379, 2024, ISSN 0962-8436
Editore: Royal Society of London
DOI: 10.1098/rstb.2023.0372

Autori: Amra Dhabalia Ashok; Jella N. Freitag; Iker Irisarri; Sophie de Vries; Jan de Vries
Pubblicato in: Crossref, Numero 4, 2024, ISSN 0031-9317
Editore: Blackwell Publishing Inc.
DOI: 10.1111/ppl.14244

Current and future perspectives for enhancing our understanding of the evolution of plant metabolism

Autori: Jan de Vries, Sophie de Vries, Alisdair R. Fernie
Pubblicato in: Philosophical Transactions of the Royal Society B: Biological Sciences, Numero 379, 2024, ISSN 0962-8436
Editore: Royal Society of London
DOI: 10.1098/rstb.2024.0253

Evolving circuitries in plant signaling cascades

Autori: Jaccoline M. S. Zegers, Iker Irisarri, Sophie de Vries, Jan de Vries
Pubblicato in: Journal of Cell Science, Numero 137, 2024, ISSN 0021-9533
Editore: The Company of Biologists Ltd.
DOI: 10.1242/jcs.261712

Convergence of sphingolipid desaturation across over 500 million years of plant evolution

Autori: Hanno Christoph Resemann, Cornelia Herrfurth, Kirstin Feussner, Ellen Hornung, Anna K. Ostendorf, Jasmin Gömann, Jennifer Mittag, Nico van Gessel, Jan de Vries, Jutta Ludwig-Müller, Jennifer Markham, Ralf Reski, Ivo Feussner
Pubblicato in: Nature Plants, 2020, ISSN 2055-0278
Editore: Springer Nature Limited
DOI: 10.1038/s41477-020-00844-3

Green land: Multiple perspectives on green algal evolution and the earliest land plants

Autori: Richard M. McCourt, Louise A. Lewis, Paul K. Strother, Charles F. Delwiche, Norman J. Wickett, Jan de Vries, John L. Bowman
Pubblicato in: American Journal of Botany, 2023, ISSN 0002-9122
Editore: Botanical Society of America, Inc.
DOI: 10.1002/ajb2.16175

Comparative analyses of saprotrophy in Salisapilia sapeloensis and diverse plant pathogenic oomycetes reveal lifestyle-specific gene expression.

Autori: Sophie de Vries; Claudio H. Slamovits; Jan de Vries; Jan de Vries; John M. Archibald
Pubblicato in: FEMS Microbiology Ecology, Numero 1, 2020, ISSN 0168-6496
Editore: Blackwell
DOI: 10.1101/656496

Phylogenomic insights into the first multicellular streptophyte

Autori: Maaike J. Bierenbroodspot; Tatyana Darienko; Sophie de Vries; Janine M.R. Fürst-Jansen; Henrik Buschmann; Thomas Pröschold; Iker Irisarri; Jan de Vries
Pubblicato in: Crossref, Numero 3, 2024, ISSN 0960-9822
Editore: Cell Press
DOI: 10.1101/2023.11.01.564981

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