Imaging life from Molecules to cells - building knowledge on Cryo-electron microscopy methodologies | IMpaCT | Project | Results | H2020 | CORDIS

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D4.5 Report on Dissemination, Communication & Exploitation activities

Different activities are planned for dissemination Thus a report will be prepared by the end of the project reporting all the different activities performed during the project

D2.6 Part II - Scientific seminars from international researchers on Cryo-EM areas

A total of 2 seminars per year will be organized at ITQB NOVA to be presented by scientists well established in the field The selection of speakers will consider the different methodologies of the CryoEM technology and as much as possible cover research scientific projects overlapping those of the MX Unit One of the goals will be to bring scientists recognized as landmarks in the CryoEM methodologies for instance those that were awarded the 2017 Nobel Prize of Chemistry This deliverable concerns to the second part of these seminars

D2.3 Part I - Scientific seminars from international researchers on Cryo-EM areas

D 4.3 Reports on the Scientific conferences participation

Dissemination will be achieved mainly through participation in scientific conferences and thematic workshops and publishing of the results in high impact specialized peerreviewed journals We will aim to participate in scientific conferences specific to the different research projects that are ongoing in our MX Unit namely cancer viral infections and cellular substructures results of the different projects with major contributions directly arising from the shortterm visits to the Widening partners will be especially highlighted

D3.2 Plan of the career development short courses for early-stage researchers

A devoted WP (WP3) to the career development of early-stage researchers are planned within the proposal. The activities planned are training session regarding grant and scientific writing; communicating science, and IPR training. Thus a detail plan of the career development short courses for early-stage researchers will be performed based on the discussions that will occur during the kick-off-meeting.

D4.4 Participant evaluation of the Mini-symposium Pharmaceutical Cryo-EM applications

Our exploitation strategy will include the organization of a minisymposium targeted at pharmaceutical companies to raise awareness to the potential contribution of CryoEM to drug discovery and development pipelines One of the goals will be to collect the views and ideas of the industrial participants about their needs and problems to which science may provide solutions Different pharmaceutical companies will be invited to participate those that have already experience in CryoEM methodologies and others that have not started their studies using CryoEM The impact will be evaluated based on the quiz to the participants and on the diversity of the different pharmaceutical companies that will participate in the minisymposium

D 4.2 Outreach activities

Outreach activities will be promoted for the general public but also devoted to students from high school undergraduate master and doctoral levels The goal is to communicate the vast implications of Structural Biology by setting the basis for a twoway dialogue with target audiences increase the visibility and reputation of the project and partners perhaps also encouraging some of the young people to consider careers in science

Publications

Improvements on marker-free images alignment for electron tomography

Auteurs: C.O.S. Sorzano, F. de Isidro-Gómez, E. Fernández-Giménez, D. Herreros, S. Marco, J.M. Carazo, C. Messaoudi.
Publié dans: Journal of Structural Biology X, Numéro 4, 2020, Page(s) 137, ISSN 2590-1524
Éditeur: Elsevier
DOI: 10.1016/j.yjsbx.2020.100037

The interplay between Mn and Fe in Deinococcus radiodurans triggers cellular protection during paraquat-induced oxidative stress

Auteurs: Sandra P. Santos, Yang Yang, Margarida T. G. Rosa, Mafalda A. A. Rodrigues, Claire Bouthier De La Tour, Suzanne Sommer, Miguel Teixeira, Maria A. Carrondo, Peter Cloetens, Isabel A. Abreu, Célia V. Romão
Publié dans: Scientific Reports, Numéro 9/1, 2019, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/s41598-019-53140-2

Studies of multifunctional DNA polymerase I from the extremely radiation resistant Deinococcus radiodurans: recombinant expression, purification and characterization of the full-length protein and its large fragment

Auteurs: Fernandes, A., Piotrowski, Y., Williamson, A. Frade, K, and Moe, E.
Publié dans: Protein Expression and Purification, 2021, Page(s) 105925, ISSN 1046-5928
Éditeur: Academic Press
DOI: 10.1016/j.pep.2021.105925

In vitro neutralisation of Zika virus by an engineered protein targeting the viral envelope fusion loop

Auteurs: Isabelle F. T. Viana, Carlos H. B. Cruz, Diogo Athayde, W. Camilla S. Adan, Lícya S. S. Xavier, Margarida Archer and Roberto D. Lins
Publié dans: Molecular Systems Design & Engineering, Numéro 8, 2023, Page(s) 516-526, ISSN 2058-9689
Éditeur: Royal Society of Chemistry
DOI: 10.1039/d2me00170e

Algorithmic robustness to preferred orientations in Single Particle Analysis by CryoEM

Auteurs: C.O.S. Sorzano, D. Semchonok, S.C. Lin, J.L. Vilas, A. Jimenez-Moreno, M. Gragera, D. Maluenda, M. Martinez, E. Ramirez-Aportela, R. Melero, A. Cuervo, P. Conesa, L. del Caño, Y.C. Fonseca, R. Sánchez-García, D. Strelak, E. Fernández-Giménez, F. de Isidro, P. Kastritis, R. Marabini, B. Bruce, J.M. Carazo.
Publié dans: Journal of Structural Biology, Numéro 213 / 1, 2021, Page(s) 107695, ISSN 1047-8477
Éditeur: Academic Press
DOI: 10.1016/j.jsb.2020.107695

On bias, variance, overfitting, gold standard and consensus in single-particle analysis by cryo-electron microscopy

Auteurs: C.O.S. Sorzano, A. Jimenez-Moreno, D. Maluenda, M. Martinez, E. Ramirez-Aportela, R. Melero, A. Cuervo, J. Conesa, J. Filipovic, P.Conesa, L. del Caño, Y.C. Fonseca, J. Jiménez-de la Morena, P. Losana, R. Sáchez-García, D. Strelak, E. Fernandez-Gimenez, F. de Isidro, D.Herreros, J.L. Vilas, R. Marabini, J.M. Carazo
Publié dans: Acta Crystallographica Section D, Numéro 78 / 4, 2022, Page(s) 410-423, ISSN 2059-7983
Éditeur: International Union of Crystallography
DOI: 10.1107/s2059798322001978

Identification of a conserved virion-stabilizing network inside the interprotomer pocket of enteroviruses

Auteurs: Flatt, J.W., Domanska, A., Seppälä, A.L., Butcher, S.J.
Publié dans: Communications Biology, Numéro 4, 2021, Page(s) 250, ISSN 2399-3642
Éditeur: SpringerNature
DOI: 10.1038/s42003-021-01779-x

SARS-CoV-2 production, purification methods and UV inactivation for proteomics and structural studies

Auteurs: Plavec, Z., Domanska, A., Liu, X., Laine, P., Paulin, L., Varjosalo, M., Auvinen, P., Wolf, S.G., Anastasina, M., Butcher, S.J.
Publié dans: Viruses, Numéro 14 / 9, 2022, Page(s) 1989, ISSN 1999-4915
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v14091989

Sweet and sour: an update on classic galactosemia

Auteurs: Ana I. Coelho, M. Estela Rubio-Gozalbo, João B. Vicente, Isabel Rivera
Publié dans: Journal of Inherited Metabolic Disease, Numéro 40/3, 2017, Page(s) 325-342, ISSN 0141-8955
Éditeur: Kluwer Academic Publishers
DOI: 10.1007/s10545-017-0029-3

Syntheses of the plant auxin conjugate 2- O -(indole-3-acetyl)- myo -inositol IAInos

Auteurs: Saúl Silva, Osvaldo S. Ascenso, Eva C. Lourenço, Margarida Archer, Christopher D. Maycock, M. Rita Ventura
Publié dans: Organic & Biomolecular Chemistry, Numéro 16/38, 2018, Page(s) 6860-6864, ISSN 1477-0520
Éditeur: Royal Society of Chemistry
DOI: 10.1039/c8ob02096e

SAXS Structural Studies of Dps from Deinococcus radiodurans Highlights the Conformation of the Mobile N-Terminal Extensions

Auteurs: Sandra P. Santos, Maxime G. Cuypers, Adam Round, Stephanie Finet, Theyencheri Narayanan, Edward P. Mitchell, Célia V. Romão
Publié dans: Journal of Molecular Biology, Numéro 429/5, 2017, Page(s) 667-687, ISSN 0022-2836
Éditeur: Academic Press
DOI: 10.1016/j.jmb.2017.01.008

Hydrogen Sulfide Oxidation: Adaptive Changes in Mitochondria of SW480 Colorectal Cancer Cells upon Exposure to Hypoxia

Auteurs: Francesca Malagrinò, Karim Zuhra, Ludovica Mascolo, Daniela Mastronicola, João B. Vicente, Elena Forte, Alessandro Giuffrè
Publié dans: Oxidative Medicine and Cellular Longevity, Numéro 2019, 2019, Page(s) 1-11, ISSN 1942-0900
Éditeur: Landes Bioscience
DOI: 10.1155/2019/8102936

X-ray structure of full-length human RuvB-Like 2 – mechanistic insights into coupling between ATP binding and mechanical action

Auteurs: Sara T. N. Silva, José A. Brito, Rocío Arranz, Carlos Óscar S. Sorzano, Christine Ebel, James Doutch, Mark D. Tully, José-María Carazo, José L. Carrascosa, Pedro M. Matias, Tiago M. Bandeiras
Publié dans: Scientific Reports, Numéro 8/1, 2018, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/s41598-018-31997-z

Molecular structure of FoxE, the putative iron oxidase of Rhodobacter ferrooxidans SW2

Auteurs: Luis Pereira, Ivo H. Saraiva, A. Sofia F. Oliveira, Cláudio M. Soares, Ricardo O. Louro, Carlos Frazão
Publié dans: Biochimica et Biophysica Acta (BBA) - Bioenergetics, Numéro 1858/10, 2017, Page(s) 847-853, ISSN 0005-2728
Éditeur: Elsevier BV
DOI: 10.1016/j.bbabio.2017.07.002

Hydrogen Sulfide Biochemistry and Interplay with Other Gaseous Mediators in Mammalian Physiology

Auteurs: Alessandro Giuffrè, João B. Vicente
Publié dans: Oxidative Medicine and Cellular Longevity, Numéro 2018, 2018, Page(s) 1-31, ISSN 1942-0900
Éditeur: Landes Bioscience
DOI: 10.1155/2018/6290931

Screening Pyridine Derivatives against Human Hydrogen Sulfide-synthesizing Enzymes by Orthogonal Methods

Auteurs: Karim Zuhra, Pedro M. F. Sousa, Giulia Paulini, Ana Rita Lemos, Zenta Kalme, Imants Bisenieks, Egils Bisenieks, Brigita Vigante, Gunars Duburs, Tiago M. Bandeiras, Luciano Saso, Alessandro Giuffrè, João B. Vicente
Publié dans: Scientific Reports, Numéro 9/1, 2019, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/s41598-018-36994-w

Spectroelectrochemical insights into structural and redox properties of immobilized endonuclease III and its catalytically inactive mutant

Auteurs: Elin Moe, Filipe Rollo, Célia M. Silveira, Murat Sezer, Peter Hildebrandt, Smilja Todorovic
Publié dans: Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, Numéro 188, 2018, Page(s) 149-154, ISSN 1386-1425
Éditeur: Pergamon Press Ltd.
DOI: 10.1016/j.saa.2017.06.050

N-Acetylcysteine Serves as Substrate of 3-Mercaptopyruvate Sulfurtransferase and Stimulates Sulfide Metabolism in Colon Cancer Cells

Auteurs: Karim Zuhra, Catarina S. Tomé, Letizia Masi, Giorgio Giardina, Giulia Paulini, Francesca Malagrinò, Elena Forte, João B. Vicente, Alessandro Giuffrè
Publié dans: Cells, Numéro 8/8, 2019, Page(s) 828, ISSN 2073-4409
Éditeur: MDPI
DOI: 10.3390/cells8080828

The key role of glutamate 172 in the mechanism of type II NADH:quinone oxidoreductase of Staphylococcus aureus

Auteurs: Filipe M. Sousa, Filipa V. Sena, Ana P. Batista, Diogo Athayde, José A. Brito, Margarida Archer, A. Sofia F. Oliveira, Cláudio M. Soares, Teresa Catarino, Manuela M. Pereira
Publié dans: Biochimica et Biophysica Acta (BBA) - Bioenergetics, Numéro 1858/10, 2017, Page(s) 823-832, ISSN 0005-2728
Éditeur: Elsevier BV
DOI: 10.1016/j.bbabio.2017.08.002

Analysis of a new flavodiiron core structural arrangement in Flv1-ΔFlR protein from Synechocystis sp. PCC6803

Auteurs: Patrícia T. Borges, Célia V. Romão, Lígia M. Saraiva, Vera L. Gonçalves, Maria A. Carrondo, Miguel Teixeira, Carlos Frazão
Publié dans: Journal of Structural Biology, Numéro 205/1, 2019, Page(s) 91-102, ISSN 1047-8477
Éditeur: Academic Press
DOI: 10.1016/j.jsb.2018.11.004

Protein conformational flexibility modulates kinetics and thermodynamics of drug binding

Auteurs: M. Amaral, D. B. Kokh, J. Bomke, A. Wegener, H. P. Buchstaller, H. M. Eggenweiler, P. Matias, C. Sirrenberg, R. C. Wade, M. Frech
Publié dans: Nature Communications, Numéro 8/1, 2017, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/s41467-017-02258-w

How superoxide reductases and flavodiiron proteins combat oxidative stress in anaerobes

Auteurs: Maria C. Martins, Célia V. Romão, Filipe Folgosa, Patrícia T. Borges, Carlos Frazão, Miguel Teixeira
Publié dans: Free Radical Biology and Medicine, Numéro 140, 2019, Page(s) 36-60, ISSN 0891-5849
Éditeur: Elsevier BV
DOI: 10.1016/j.freeradbiomed.2019.01.051

Structure and reactivity of a siderophore-interacting protein from the marine bacterium Shewanella reveals unanticipated functional versatility

Auteurs: Inês B. Trindade, José M. Silva, Bruno M. Fonseca, Teresa Catarino, Masaki Fujita, Pedro M. Matias, Elin Moe, Ricardo O. Louro
Publié dans: Journal of Biological Chemistry, Numéro 294/1, 2019, Page(s) 157-167, ISSN 0021-9258
Éditeur: American Society for Biochemistry and Molecular Biology Inc.
DOI: 10.1074/jbc.ra118.005041

A Clinically Relevant Variant of the Human Hydrogen Sulfide-Synthesizing Enzyme Cystathionine β -Synthase: Increased CO Reactivity as a Novel Molecular Mechanism of Pathogenicity?

Auteurs: João B. Vicente, Henrique G. Colaço, Francesca Malagrinò, Paulo E. Santo, André Gutierres, Tiago M. Bandeiras, Paula Leandro, José A. Brito, Alessandro Giuffrè
Publié dans: Oxidative Medicine and Cellular Longevity, Numéro 2017, 2017, Page(s) 1-13, ISSN 1942-0900
Éditeur: Landes Bioscience
DOI: 10.1155/2017/8940321

Fluorinated ionic liquids for protein drug delivery systems: Investigating their impact on the structure and function of lysozyme

Auteurs: Márcia Alves, Nicole S.M. Vieira, Luís Paulo N. Rebelo, João M.M. Araújo, Ana B. Pereiro, Margarida Archer
Publié dans: International Journal of Pharmaceutics, Numéro 526/1-2, 2017, Page(s) 309-320, ISSN 0378-5173
Éditeur: Elsevier BV
DOI: 10.1016/j.ijpharm.2017.05.002

The three Endonuclease III variants of Deinococcus radiodurans possess distinct and complementary DNA repair activities

Auteurs: Aili Sarre, Meike Stelter, Filipe Rollo, Salvatore De Bonis, Anna Seck, Cécilia Hognon, Jean-Luc Ravanat, Antonio Monari, François Dehez, Elin Moe, Joanna Timmins
Publié dans: DNA Repair, Numéro 78, 2019, Page(s) 45-59, ISSN 1568-7864
Éditeur: Elsevier BV
DOI: 10.1016/j.dnarep.2019.03.014

A putative siderophore-interacting protein from the marine bacterium Shewanella frigidimarina NCIMB 400: cloning, expression, purification, crystallization and X-ray diffraction analysis

Auteurs: Inês B. Trindade, Bruno M. Fonseca, Pedro M. Matias, Ricardo O. Louro, Elin Moe
Publié dans: Acta Crystallographica Section F Structural Biology Communications, Numéro 72/9, 2016, Page(s) 667-671, ISSN 2053-230X
Éditeur: John Wiley and Sons Ltd
DOI: 10.1107/s2053230x16011419

A Hydrophilic Channel Is Involved in Oxidative Inactivation of a [NiFeSe] Hydrogenase

Auteurs: Sónia Zacarias, Adriana Temporão, Melisa del Barrio, Vincent Fourmond, Christophe Léger, Pedro M. Matias, Inês A. C. Pereira
Publié dans: ACS Catalysis, Numéro 9/9, 2019, Page(s) 8509-8519, ISSN 2155-5435
Éditeur: American Chemical Society
DOI: 10.1021/acscatal.9b02347

Structure of Escherichia coli Flavodiiron Nitric Oxide Reductase

Auteurs: Célia V. Romão, João B. Vicente, Patrícia T. Borges, Bruno L. Victor, Pedro Lamosa, Elísio Silva, Luís Pereira, Tiago M. Bandeiras, Cláudio M. Soares, Maria A. Carrondo, David Turner, Miguel Teixeira, Carlos Frazão
Publié dans: Journal of Molecular Biology, Numéro 428/23, 2016, Page(s) 4686-4707, ISSN 0022-2836
Éditeur: Academic Press
DOI: 10.1016/j.jmb.2016.10.008

PRMT5-Dependent Methylation of the TIP60 Coactivator RUVBL1 Is a Key Regulator of Homologous Recombination

Auteurs: Thomas L. Clarke, Maria Pilar Sanchez-Bailon, Kelly Chiang, John J. Reynolds, Joaquin Herrero-Ruiz, Tiago M. Bandeiras, Pedro M. Matias, Sarah L. Maslen, J. Mark Skehel, Grant S. Stewart, Clare C. Davies
Publié dans: Molecular Cell, Numéro 65/5, 2017, Page(s) 900-916.e7, ISSN 1097-2765
Éditeur: Cell Press
DOI: 10.1016/j.molcel.2017.01.019

Bioenergetic relevance of hydrogen sulfide and the interplay between gasotransmitters at human cystathionine β-synthase

Auteurs: João B. Vicente, Francesca Malagrinò, Marzia Arese, Elena Forte, Paolo Sarti, Alessandro Giuffrè
Publié dans: Biochimica et Biophysica Acta (BBA) - Bioenergetics, Numéro 1857/8, 2016, Page(s) 1127-1138, ISSN 0005-2728
Éditeur: Elsevier BV
DOI: 10.1016/j.bbabio.2016.03.030

The direct role of selenocysteine in [NiFeSe] hydrogenase maturation and catalysis

Auteurs: Marta C Marques, Cristina Tapia, Oscar Gutiérrez-Sanz, Ana Raquel Ramos, Kimberly L Keller, Judy D Wall, Antonio L De Lacey, Pedro M Matias, Inês A C Pereira
Publié dans: Nature Chemical Biology, Numéro 13/5, 2017, Page(s) 544-550, ISSN 1552-4450
Éditeur: Nature Publishing Group
DOI: 10.1038/nchembio.2335

The rice cold-responsive calcium-dependent protein kinase OsCPK17 is regulated by alternative splicing and post-translational modifications

Auteurs: M. Cecília Almadanim, Nuno M. Gonçalves, Margarida T.G. Rosa, Bruno M. Alexandre, André M. Cordeiro, Mafalda Rodrigues, Nelson J.M. Saibo, Cláudio M. Soares, Célia V. Romão, M. Margarida Oliveira, Isabel A. Abreu
Publié dans: Biochimica et Biophysica Acta (BBA) - Molecular Cell Research, Numéro 1865/2, 2018, Page(s) 231-246, ISSN 0167-4889
Éditeur: Elsevier BV
DOI: 10.1016/j.bbamcr.2017.10.010

Desulfovibrio vulgaris CbiK P cobaltochelatase: evolution of a haem binding protein orchestrated by the incorporation of two histidine residues

Auteurs: Susana A.L. Lobo, Marco A.M. Videira, Isabel Pacheco, Mark N. Wass, Martin J. Warren, Miguel Teixeira, Pedro M. Matias, Célia V. Romão, Lígia M. Saraiva
Publié dans: Environmental Microbiology, Numéro 19/1, 2016, Page(s) 106-118, ISSN 1462-2912
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/1462-2920.13479

Electron Accepting Units of the Diheme Cytochrome c TsdA, a Bifunctional Thiosulfate Dehydrogenase/Tetrathionate Reductase

Auteurs: Julia M. Kurth, José A. Brito, Jula Reuter, Alexander Flegler, Tobias Koch, Thomas Franke, Eva-Maria Klein, Sam F. Rowe, Julea N. Butt, Kevin Denkmann, Inês A. C. Pereira, Margarida Archer, Christiane Dahl
Publié dans: Journal of Biological Chemistry, Numéro 291/48, 2016, Page(s) 24804-24818, ISSN 0021-9258
Éditeur: American Society for Biochemistry and Molecular Biology Inc.
DOI: 10.1074/jbc.m116.753863

Optimizing Electroactive Organisms: The Effect of Orthologous Proteins

Auteurs: Bruno M. Fonseca, Luís Silva, Inês B. Trindade, Elin Moe, Pedro M. Matias, Ricardo O. Louro, Catarina M. Paquete
Publié dans: Frontiers in Energy Research, Numéro 7, 2019, ISSN 2296-598X
Éditeur: Frontiers in Energy Research
DOI: 10.3389/fenrg.2019.00002

A Decade of Biochemical and Structural Studies of the DNA Repair Machinery of Deinococcus radiodurans: Major Findings, Functional and Mechanistic Insight and Challenges

Auteurs: Joanna Timmins, Elin Moe
Publié dans: Computational and Structural Biotechnology Journal, Numéro 14, 2016, Page(s) 168-176, ISSN 2001-0370
Éditeur: ELSEVIER
DOI: 10.1016/j.csbj.2016.04.001

Clickable 4-Oxo-β-lactam-Based Selective Probing for Human Neutrophil Elastase Related Proteomes

Auteurs: Eduardo F. P. Ruivo, Lídia M. Gonçalves, Luís A. R. Carvalho, Rita C. Guedes, Stefan Hofbauer, José A. Brito, Margarida Archer, Rui Moreira, Susana D. Lucas
Publié dans: ChemMedChem, Numéro 11/18, 2016, Page(s) 2037-2042, ISSN 1860-7179
Éditeur: Wiley - V C H Verlag GmbbH & Co.
DOI: 10.1002/cmdc.201600258

A novel bacterial class V dye-decolourizing peroxidase from the extremophile Deinococcus radiodurans : cloning, expression optimization, purification, crystallization, initial characterization and X-ray diffraction analysis

Auteurs: Kelly Stefany Tuna Frade, Andreia Cecília Pimenta Fernandes, Celia Marisa Silveira, Carlos Frazão, Elin Moe
Publié dans: Acta Crystallographica Section F Structural Biology Communications, Numéro 74/7, 2018, Page(s) 419-424, ISSN 2053-230X
Éditeur: John Wiley and Sons Ltd
DOI: 10.1107/s2053230x18008488

Insights into the Structures of Superoxide Reductases from the Symbionts Ignicoccus hospitalis and Nanoarchaeum equitans

Auteurs: Célia V. Romão, Pedro M. Matias, Cristiana M. Sousa, Filipa G. Pinho, Ana F. Pinto, Miguel Teixeira, Tiago M. Bandeiras
Publié dans: Biochemistry, Numéro 57/36, 2018, Page(s) 5271-5281, ISSN 0006-2960
Éditeur: American Chemical Society
DOI: 10.1021/acs.biochem.8b00334

Continuous flexibility analysis of SARS-CoV-2 spike prefusion structures

Auteurs: R. Melero, C.O.S. Sorzano, B. Foster, J.L. Vilas, M. Martínez, R. Marabini, E. Ramírez-Aportela, R. Sánchez-García, D. Herreros, L. del Caño, P. Losana, Y. Fonseca-Reyna, P. Conesa, D. Wrapp, P. Chacón, J.S. McLellan, H.D. Tagare, J.M. Carazo
Publié dans: IUCrJ, Numéro 7, 2020, Page(s) 1059-1069, ISSN 2052-2525
Éditeur: International Union of Crystallography
DOI: 10.1107/s2052252520012725

Advances in Xmipp for Cryo-electron Microscopy: From Xmipp to Scipion

Auteurs: D. Strelak, A. Jiménez-Moreno, J.L. Vilas, E. Ramírez-Aportela, R. Sánchez-García, D. Maluenda, J. Vargas, D. Herreros, E. Fernández-Giménez, F. de Isidro-Gómez, J. Horacek, D. Myska, M. Horacek, P. Conesa, Y.C. Fonseca-Reyna, J. Jiménez, M. Martínez, M. Harastani, S. Jonic, J. Filipovic, R. Marabini, J.M. Carazo, C.O.S. Sorzano.
Publié dans: Molecules, Numéro 26 / 20, 2021, Page(s) 6224, ISSN 1420-3049
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/molecules26206224

Image processing tools for the validation of CryoEM maps

Auteurs: C.O.S. Sorzano, J.L. Vilas, E. Ramírez-Aportela, D. del Hoyo, D. Herreros, E. Fernandez-Giménez, D. Marchán, F. de Isidro Gómez, J.R. Macías, I. Sánchez, L. del Caño, Y. Fonseca-Reyna, P. Conesa, A. García-Mena, J. Burguet, J. García Condado, J. Méndez García, M. Martínez, A. Muñoz Barrutia, R. Marabini, J. Vargas, J.M. Carazo.
Publié dans: Faraday Discussions, Numéro 240, 2022, Page(s) 210-227, ISSN 1359-6640
Éditeur: Royal Society of Chemistry
DOI: 10.1039/d2fd00059h

Cytochrome bd and Gaseous Ligands in Bacterial Physiology

Auteurs: Elena Forte, Vitaliy B. Borisov, João B. Vicente, Alessandro Giuffrè
Publié dans: Advances in Microbial Physiology volume 71, Numéro 71, 2017, Page(s) 171-234, ISBN 9780-128123850
Éditeur: Elsevier
DOI: 10.1016/bs.ampbs.2017.05.002

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