Advanced simulation, analysis and interpretation of network structures in biological data

Structure and individuality of navigation in zebrafish larvae

Autori: Dommanget-Kott, Mattéo; Fernandez-De-Cossio-Diaz, Jorge; Coraggioso, Monica; Bormuth, Volker; Monasson, Rémi; Debrégeas, Georges; Cocco, Simona
Pubblicato in: https://hal.science/hal-04445557, Numero 1, 2024
Editore: HAL Open Science

Structure and individuality of navigation in zebrafish larvae

Autori: Dommanget-Kott, Mattéo; Fernandez-De-Cossio-Diaz, Jorge; Coraggioso, Monica; Bormuth, Volker; Monasson, Rémi; Debrégeas, Georges; Cocco, Simona
Pubblicato in: https://hal.science/hal-04445557, Numero 1, 2024
Editore: HAL Open Science

Where top-down meets bottom-up: Cell-type specific connectivity map of the whisker system

Autori: N. Rault, T. Bergmans, N. Delfstra, BJ Kleijnen, F. Zeldenrust, T. Celikel
Pubblicato in: 2024
Editore: Cold Spring Harbor Laboratory
DOI: 10.1101/2023.07.31.551377

DendroTweaks: An interactive approach for unraveling dendritic dynamics

Autori: Roman Makarov, Spyridon Chavlis, Panayiota Poirazi
Pubblicato in: 2024
Editore: eLife Sciences Publications, Ltd
DOI: 10.7554/elife.103324

Linking Brain and Behavior States in Zebrafish Larvae Locomotion using Hidden Markov Models

Autori: Mattéo Dommanget-Kott, Jorge Fernandez-de-Cossio-Diaz, Monica Coraggioso, Volker Bormuth, Rémi Monasson, Georges Debrégeas, Simona Cocco
Pubblicato in: 2024
Editore: Cold Spring Harbor Laboratory
DOI: 10.1101/2024.11.22.624881

Dendrites and Efficiency: Optimizing Performance and Resource Utilization

Autori: Roman Makarov, Michalis Pagkalos, Panayiota Poirazi
Pubblicato in: 2023
Editore: arXiv
DOI: 10.48550/arxiv.2306.07101

Brain Olympiad reader on Computational Neuroscience & Artificial Intelligence

Autori: Tido Bergmans, Nicolas Rault, Tousif Jamal, Nishant Joshi, Matthew Lennon, Hilal Nizamoğlu, Ildefonso Ferreira Pica, Nicole Vissers, Devin Kellis, Tobio Aarts & Fleur Zeldenrust
Pubblicato in: 2021
Editore: Dutch Brain Olympiad

<i>DendroTweaks</i>: An interactive approach for unraveling dendritic dynamics

Autori: Roman Makarov, Spyridon Chavlis, Panayiota Poirazi
Pubblicato in: 2024
Editore: Cold Spring Harbor Laboratory
DOI: 10.1101/2024.09.06.611191

Neuronal Identity is Not Static—An Input-Driven Perspective

Autori: Nishant Joshi, Sven van Der Burg, Tansu Celikel, Fleur Zeldenrust
Pubblicato in: 2025
Editore: Cold Spring Harbor Laboratory
DOI: 10.1101/2024.10.16.618657

NETSCOPE: Information-Theory based Network Discovery and Analysis

Autori: Tido Bergmans, Tousif Jamal, Tansu Celikel
Pubblicato in: 2024
Editore: Cold Spring Harbor Laboratory
DOI: 10.1101/2022.04.18.488630

Source Code - Self-consistent sharp interface theory of active condensate dynamics

Autori: Goychuk, Andriy; Demarchi, Leonardo; Maryshev, Ivan; Frey, Erwin
Pubblicato in: Physical Review Research, 2024, Numero 1, 2024
Editore: Zenodo
DOI: 10.5281/zenodo.12685053

Leveraging dendritic properties to advance machine learning and neuro-inspired computing

Autori: Michalis Pagkalos, Roman Makarov, Panayiota Poirazi
Pubblicato in: 2023
Editore: arXiv
DOI: 10.48550/arxiv.2306.08007

Structured stabilization in recurrent neural circuits through inhibitory synaptic plasticity

Autori: Dylan Festa, Claudia Cusseddu, Julijana Gjorgjieva
Pubblicato in: 2024
Editore: Cold Spring Harbor Laboratory
DOI: 10.1101/2024.10.12.618014

Brain Olympiad Reader on Computational Neuroscience & Artificial Intelligence

Autori: Tido Bergmans, Nicolas Rault, Tousif Jamal, Nishant Joshi, Matthew Lennon, Hilal Nizamoğlu, Ildefonso Ferreira Pica, Nicole Vissers, Devin Kellis, Tobio Aarts & Fleur Zeldenrust
Pubblicato in: Numero 1.1 (2023), 2023
Editore: Dutch Brain Olympiad

DendroTweaks: An interactive approach for unraveling dendritic dynamics

Autori: Roman Makarov, Spyridon Chavlis, Panayiota Poirazi
Pubblicato in: eLife, Numero 13:RP103324, 2024
Editore: eLife Sciences Publications, Ltd
DOI: 10.7554/elife.103324.1

Co-evolved structural and temporal network heterogeneity

Autori: Iacob, S., Joshi, N., & Zeldenrust, F.
Pubblicato in: Bernstein Conference 2024, Numero 2024, 2024
Editore: Bernstein Network
DOI: 10.12751/nncn.bc2024.309

Delay-Sensitive Local Plasticity in Echo State Networks

Autori: Stefan Iacob, Spyridon Chavlis, Panayiota Poirazi, Joni Dambre
Pubblicato in: 2023 International Joint Conference on Neural Networks (IJCNN), 2023, Pagina/e 1-8
Editore: IEEE
DOI: 10.1109/ijcnn54540.2023.10191901

Distance-Based Delay Networks

Autori: Stefan Iacob, Joni Dambre
Pubblicato in: International conference on neuromorphic, natural and physical computing (NNPC 2024), Numero 2024, 2024
Editore: Neuromorphic, Natural and Physical Computing Conference

Network discovery using information theory: From molecular to functional networks

Autori: Tido Bergmans, Tousif Jamal, Tansu Celikel
Pubblicato in: Society for Neuroscience (SfN 2023), Numero 2023, 2023
Editore: Society for Neuroscience

Deciphering the Regulatory Control of Neuromodulatory Signaling in the Somatosensory Cortex after Sensory Deprivation

Autori: Tousif Jamal, Tansu Celikel
Pubblicato in: Society for Neuroscience (SfN 2023), Numero 2023, 2023
Editore: Society for Neuroscience

32nd Annual Computational Neuroscience Meeting: CNS*2023

Autori: Rault, N., Celikel, T., & Fleur Zeldenrust
Pubblicato in: Journal of Computational Neuroscience, Numero 52, 2024, Pagina/e 3-166, ISSN 0929-5313
Editore: Kluwer Academic Publishers
DOI: 10.1007/s10827-024-00871-5

A Bio-Inspired Model for Audio Processing

Autori: Tanguy Cazalets, Joni Dambre
Pubblicato in: 2023 RIVF International Conference on Computing and Communication Technologies (RIVF), 2024, Pagina/e 458-463
Editore: IEEE
DOI: 10.1109/rivf60135.2023.10471845

Tactile integration in the mechanoreceptors

Autori: Rault. N., Zeldenrust, F., & Celikel, T.,
Pubblicato in: Society for Neuroscience (SfN 2024), Numero 2024, 2024
Editore: Society for Neuroscience

Distance-Based Delays in Echo State Networks

Autori: Stefan Iacob, Matthias Freiberger & Joni Dambre
Pubblicato in: Intelligent Data Engineering and Automated Learning – IDEAL 2022, Numero 23rd International Conference, IDEAL 2022, 2022, Pagina/e 211-222, ISBN 978-3-031-21752-4
Editore: Springer, Cham
DOI: 10.1007/978-3-031-21753-1_21

Information flow in the somatosensory system: From Mechanoreceptor to Cortex

Autori: Rault, N., Tompos, T., Celikel, T., & Zeldenrust, F.
Pubblicato in: Bernstein Conference 2024, Numero 2024, 2024
Editore: Bernstein Network
DOI: 10.12751/nncn.bc2024.289

High dimensional clustering reveals heterogeneity in excitatory and inhibitory cells in the neocortex

Autori: Nishant, J., Celikel, T., & Zeldenrust, F.
Pubblicato in: Bernstein Conference 2023, Numero 2023, 2023
Editore: Bernstein Network
DOI: 10.12751/nncn.bc2023.095

An homeostatic activity-dependent structural plasticity algorithm for richer input combination

Autori: Tanguy Cazalets, Joni Dambre
Pubblicato in: 2023 International Joint Conference on Neural Networks (IJCNN), 2023, Pagina/e 1-8
Editore: IEEE
DOI: 10.1109/ijcnn54540.2023.10191230

DendroTweaks: An interactive approach for unraveling dendritic dynamics.

Autori: Roman Makarov, Spyridon Chavlis, Panayiota Poirazi
Pubblicato in: FENS Forum 2024, Numero 2024, 2024
Editore: Federation of European Neuroscience Societies
DOI: 10.57736/abba-7149

Memory–Non-Linearity Trade-Off in Distance-Based Delay Networks

Autori: Stefan Iacob, Joni Dambre
Pubblicato in: Biomimetics, Numero 9, 2024, Pagina/e 755, ISSN 2313-7673
Editore: MDPI
DOI: 10.3390/biomimetics9120755

Exploiting Signal Propagation Delays to Match Task Memory Requirements in Reservoir Computing

Autori: Stefan Iacob, Joni Dambre
Pubblicato in: Biomimetics, Numero 9, 2024, Pagina/e 355, ISSN 2313-7673
Editore: MDPI journals
DOI: 10.3390/biomimetics9060355

Dendrites and efficiency: Optimizing performance and resource utilization

Autori: Roman Makarov, Michalis Pagkalos, Panayiota Poirazi
Pubblicato in: Current Opinion in Neurobiology, Numero 83, 2024, Pagina/e 102812, ISSN 0959-4388
Editore: Elsevier BV
DOI: 10.1016/j.conb.2023.102812

Modeling the Emergence of Circuit Organization and Function during Development

Autori: Shreya Lakhera, Elizabeth Herbert, Julijana Gjorgjieva
Pubblicato in: Cold Spring Harbor Perspectives in Biology, 2024, Pagina/e a041511, ISSN 1943-0264
Editore: Cold Spring Harbor Laboratory Press
DOI: 10.1101/cshperspect.a041511

The dendritic engram

Autori: George Kastellakis; Simone Tasciotti; Simone Tasciotti; Ioanna Pandi; Ioanna Pandi; Panayiota Poirazi
Pubblicato in: Frontiers in Behavioral Neuroscience, Numero Volume 17 (2023), 2023, ISSN 1662-5153
Editore: Frontiers Research Foundation
DOI: 10.3389/fnbeh.2023.1212139

Enzyme-Enriched Condensates Show Self-Propulsion, Positioning, and Coexistence

Autori: Demarchi, Leonardo; Goychuk, Andriy; Maryshev, Ivan; Frey, Erwin
Pubblicato in: Physical Review Letters, Numero Volume 130, Numero 12 (March 2023), 2023, ISSN 0031-9007
Editore: American Physical Society
DOI: 10.1103/physrevlett.130.128401

Self-consistent sharp interface theory of active condensate dynamics

Autori: Andriy Goychuk, Leonardo Demarchi, Ivan Maryshev, Erwin Frey
Pubblicato in: Physical Review Research, Numero 6, 2024, ISSN 2643-1564
Editore: American Physical Society
DOI: 10.1103/physrevresearch.6.033082

Experience-dependent regulation of dopaminergic signaling in the somatosensory cortex

Autori: Tousif Jamal, Xuan Yan, Angelica da Silva Lantyer, Judith G. ter Horst & Tansu Celikel
Pubblicato in: Progress in Neurobiology, Numero 2024, 2024, ISSN 0301-0082
Editore: Pergamon Press Ltd.
DOI: 10.1016/j.pneurobio.2024.102630

Leveraging dendritic properties to advance machine learning and neuro-inspired computing

Autori: Michalis Pagkalos, Roman Makarov, Panayiota Poirazi
Pubblicato in: Current Opinion in Neurobiology, Numero 85, 2024, Pagina/e 102853, ISSN 0959-4388
Editore: Elsevier BV
DOI: 10.1016/j.conb.2024.102853

Source Code - Self-consistent sharp interface theory of active condensate dynamics

Autori: Goychuk, Andriy; Demarchi, Leonardo; Maryshev, Ivan; Frey, Erwin
Pubblicato in: Physical Review Research, Numero 6, 2024, ISSN 2643-1564
Editore: American Physical Society
DOI: 10.5281/zenodo.12685053

Where Top‑Down Meets Bottom‑Up: Cell‑Type Specific Connectivity Map of the Whisker System

Autori: Nicolas Rault, Tido Bergmans, Natasja Delfstra, Bisley J. Kleijnen, Fleur Zeldenrust & Tansu Celikel
Pubblicato in: Neuroinformatics, Numero Volume 22, Numero 2 (April 2024), 2024, ISSN 1559-0089
Editore: Springer Science
DOI: 10.1007/s12021-024-09658-6

Self-consistent sharp interface theory of active condensate dynamics

Autori: Goychuk, Andriy; Demarchi, Leonardo; Maryshev, Ivan; Frey, Erwin
Pubblicato in: Numero arXiv:2401.17111 [physics.bio-ph], 2024
Editore: arXiv
DOI: 10.48550/arxiv.2401.17111

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