COMBINING APPROACHES FOR PHOTOSYNTHETIC IMPROVEMENT TO ALLOW INCREASED SUSTAINABILITY IN EUROPEAN AGRICULTURE

Project Information

CAPITALISE

Grant agreement ID: 862201

DOI

10.3030/862201

Project closed

EC signature date 15 April 2020

Start date 1 April 2020

End date 30 November 2024

Funded under

• INDUSTRIAL LEADERSHIP - Leadership in enabling and industrial technologies – Biotechnology

Total cost

€ 8 917 645,75

EU contribution

€ 8 573 894,75

Coordinated by

WAGENINGEN UNIVERSITY
Netherlands

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Deliverables

Documents, reports (2)

Report on strategic agenda

A report will be produced, detailing the challenges, choices and impact of applying new innovations for increased photosynthetic efficiency. This will address general process recommendations for a reflective review of acceptance of new technologies.

European Strategic Research Agenda and Road Map to 2030

Road map and strategic research agenda available

Websites, patent fillings, videos etc. (1)

Project website operational

Project website online

Publications

Peer reviewed articles (25)

Improving C3 photosynthesis by exploiting natural genetic variation: Hirschfeldia incana as a model species

Author(s): Graham Taylor, Francesco Garassino, Mark G. M. Aarts, Jeremy Harbinson
Published in: Food and Energy Security, Issue 12, 2023, ISSN 2048-3694
Publisher: John Wiley & Sons Ltd.
DOI: 10.1002/fes3.420

The genome sequence of Hirschfeldia incana, a new Brassicaceae model to improve photosynthetic light-use efficiency

Author(s): Francesco Garassino, Raul Y. Wijfjes, Rene Boesten, Francisca Reyes Marquez, Frank F. M. Becker, Vittoria Clapero, Iris van den Hatert, Rens Holmer, M. Eric Schranz, Jeremy Harbinson, Dick de Ridder, Sandra Smit, Mark G. M. Aarts
Published in: The Plant Journal, Issue 112, 2022, Page(s) 1298-1315, ISSN 0960-7412
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/tpj.16005

Genetic loci mediating circadian clock output plasticity and crop productivity under barley domestication

Author(s): Manas R. Prusty, Eyal Bdolach, Eiji Yamamoto, Lalit D. Tiwari, Roi Silberman, Adi Doron‐Faigenbaum, Jeffrey L. Neyhart, David Bonfil, Khalil Kashkush, Klaus Pillen, Kevin P. Smith, Eyal Fridman
Published in: New Phytologist, Issue 230/5, 2021, Page(s) 1787-1801, ISSN 0028-646X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/nph.17284

Excised leaves show limited and species-specific effects on photosynthetic parameters across crop functional types

Author(s): John N Ferguson, Tamanna Jithesh, Tracy Lawson, Johannes Kromdijk
Published in: Journal of Experimental Botany, Issue 74, 2023, Page(s) 6662-6676, ISSN 0022-0957
Publisher: Oxford University Press
DOI: 10.1093/jxb/erad319

Topology of the redox network during induction of photosynthesis as revealed by time-resolved proteomics in tobacco

Author(s): David Zimmer, Corné Swart, Alexander Graf, Stéphanie Arrivault, Michael Tillich, Sebastian Proost, Zoran Nikoloski, Mark Stitt, Ralph Bock, Timo Mühlhaus, Alix Boulouis
Published in: Science Advances, Issue 7, 2024, ISSN 2375-2548
Publisher: AAAS
DOI: 10.1126/sciadv.abi8307

Proteomics and constraint-based modelling reveal enzyme kinetic properties of Chlamydomonas reinhardtii on a genome scale

Author(s): Marius Arend, David Zimmer, Rudan Xu, Frederik Sommer, Timo Mühlhaus, Zoran Nikoloski
Published in: Nature Communications, Issue 14, 2023, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-023-40498-1

<i>Solanum pennellii</i> (<scp>LA5240</scp>) backcross inbred lines (<scp>BILs</scp>) for high resolution mapping in tomato

Author(s): Shai Torgeman, Tzili Pleban, Yael Goldberg, Paola Ferrante, Giuseppe Aprea, Giovanni Giuliano, Yoav Yichie, Josef Fisher, Itay Zemach, Amit Koch, Edan Rochsar, Matan Oved, Kfir Bandel, Dani Zamir
Published in: The Plant Journal, Issue 119, 2024, Page(s) 595-603, ISSN 0960-7412
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/tpj.16755

Epistatic QTLs for yield heterosis in tomato

Author(s): Shai Torgeman, Dani Zamir
Published in: Proceedings of the National Academy of Sciences, Issue 120, 2023, ISSN 0027-8424
Publisher: National Academy of Sciences
DOI: 10.1073/pnas.2205787119

Maximization of non-idle enzymes improves the coverage of the estimated maximal <i>in vivo</i> enzyme catalytic rates in <i>Escherichia coli</i>

Author(s): Rudan Xu, Zahra Razaghi-Moghadam, Zoran Nikoloski
Published in: Bioinformatics, Issue 37, 2023, Page(s) 3848-3855, ISSN 1367-4803
Publisher: Oxford University Press
DOI: 10.1093/bioinformatics/btab575

Transcriptomic response to nitrogen availability reveals signatures of adaptive plasticity during tetraploid wheat domestication

Author(s): Alice Pieri, Romina Beleggia, Tania Gioia, Hao Tong, Valerio Di Vittori, Giulia Frascarelli, Elena Bitocchi, Laura Nanni, Elisa Bellucci, Fabio Fiorani, Nicola Pecchioni, Stefania Marzario, Concetta De Quattro, Antonina Rita Limongi, Pasquale De Vita, Marzia Rossato, Ulrich Schurr, Jacques L David, Zoran Nikoloski, Roberto Papa
Published in: The Plant Cell, Issue 36, 2024, Page(s) 3809-3823, ISSN 1040-4651
Publisher: American Society of Plant Biologists
DOI: 10.1093/plcell/koae202

Relative flux trade-offs and optimization of metabolic network functionalities

Author(s): Seirana Hashemi, Zahra Razaghi-Moghadam, Roosa A. E. Laitinen, Zoran Nikoloski
Published in: Computational and Structural Biotechnology Journal, Issue 20, 2022, Page(s) 3963-3971, ISSN 2001-0370
Publisher: Elsevier
DOI: 10.1016/j.csbj.2022.07.038

Cytonuclear interactions modulate the plasticity of photosynthetic rhythmicity and growth in wild barley

Author(s): Lalit Dev Tiwari, Eyal Bdolach, Manas Ranjan Prusty, Schewach Bodenheimer, Avital Be'ery, Adi Faigenboim‐Doron, Eiji Yamamoto, Klára Panzarová, Khalil Kashkush, Noam Shental, Eyal Fridman
Published in: Physiologia Plantarum, Issue 176, 2024, ISSN 0031-9317
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/ppl.14192

Maximizing multi-reaction dependencies provides more accurate and precise predictions of intracellular fluxes than the principle of parsimony

Author(s): Seirana Hashemi, Zahra Razaghi-Moghadam, Zoran Nikoloski
Published in: PLOS Computational Biology, Issue 19, 2023, Page(s) e1011489, ISSN 1553-7358
Publisher: PLOS
DOI: 10.1371/journal.pcbi.1011489

Combination of network and molecule structure accurately predicts competitive inhibitory interactions

Author(s): Zahra Razaghi-Moghadam, Ewelina M. Sokolowska, Marcin A. Sowa, Aleksandra Skirycz, Zoran Nikoloski
Published in: Computational and Structural Biotechnology Journal, Issue 19, 2024, Page(s) 2170-2178, ISSN 2001-0370
Publisher: CSB
DOI: 10.1016/j.csbj.2021.04.012

Regulation of Rubisco activity in crops

Author(s): Joana Amaral, Ana K. M. Lobo, Elizabete Carmo‐Silva
Published in: New Phytologist, Issue 241, 2024, Page(s) 35-51, ISSN 0028-646X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/nph.19369

Crops under past diversification and ongoing climate change: more than just selection of nuclear genes for flowering

Author(s): Lalit Dev Tiwari, Ayelet Kurtz-Sohn, Eyal Bdolach, Eyal Fridman
Published in: Journal of Experimental Botany, Issue 74, 2023, Page(s) 5431-5440, ISSN 0022-0957
Publisher: Oxford University Press
DOI: 10.1093/jxb/erad283

From data to knowledge – big data needs stewardship, a plant phenomics perspective

Author(s): Daniel Arend; Dennis Psaroudakis; Junaid Altaf Memon; Elena Rey‐Mazón; Danuta Schüler; Jedrzej Jakub Szymanski; Uwe Scholz; Astrid Junker; Matthias Lange
Published in: The Plant Journal, Issue 09607412, 2022, Page(s) 335-347, ISSN 0960-7412
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/tpj.15804

Data integration across conditions improves turnover number estimates and metabolic predictions

Author(s): Philipp Wendering, Marius Arend, Zahra Razaghi-Moghadam, Zoran Nikoloski
Published in: Nature Communications, Issue 14, 2023, Page(s) 1485, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-023-37151-2

Improving plant productivity by re-tuning the regeneration of RuBP in the Calvin–Benson–Bassham cycle

Author(s): Christine Raines
Published in: New Phytologist, 2022, Page(s) 236, ISSN 0028-646X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/nph.18394

Genetic variation in photosynthesis: many variants make light work

Author(s): Johannes Kromdijk, Alistair J McCormick
Published in: Journal of Experimental Botany, Issue 73, 2022, Page(s) 3053-3056, ISSN 0022-0957
Publisher: Oxford University Press
DOI: 10.1093/jxb/erac129

Prediction of metabolite–protein interactions based on integration of machine learning and constraint-based modeling

Author(s): Fayaz Soleymani Babadi, Zahra Razaghi-Moghadam, Fatemeh Zare-Mirakabad, Zoran Nikoloski
Published in: Bioinformatics Advances, Issue 3, 2023, ISSN 2635-0041
Publisher: Oxford University Press
DOI: 10.1093/bioadv/vbad098

Perspectives on improving photosynthesis to increase crop yield

Author(s): Roberta Croce, Elizabete Carmo-Silva, Young B Cho, Maria Ermakova, Jeremy Harbinson, Tracy Lawson, Alistair J McCormick, Krishna K Niyogi, Donald R Ort, Dhruv Patel-Tupper, Paolo Pesaresi, Christine Raines, Andreas P M Weber, Xin-Guang Zhu
Published in: The Plant Cell, Issue 36, 2024, Page(s) 3944-3973, ISSN 1040-4651
Publisher: American Society of Plant Biologists
DOI: 10.1093/plcell/koae132

Genetics as a key to improving crop photosynthesis

Author(s): Tom P.J.M Theeuwen; Louise L. Logie; Jeremy Harbinson; Mark G. M. Aarts
Published in: Journal of Experimental Botany, Volume 73, Issue 10, Issue 10, 2022, Page(s) 3122–3137, ISSN 0022-0957
Publisher: Oxford University Press
DOI: 10.1093/jxb/erac076

Breeding by intervening: Exploring the role of associations and deliberation in consumer acceptance of different breeding techniques

Author(s): Paul Nales, Arnout R.H. Fischer
Published in: Public Understanding of Science, Issue 32, 2024, Page(s) 889-906, ISSN 0963-6625
Publisher: SAGE Publications
DOI: 10.1177/09636625231168087

Identification of gene function based on models capturing natural variability of Arabidopsis thaliana lipid metabolism

Author(s): Sandra Correa Córdoba, Hao Tong, Asdrúbal Burgos, Feng Zhu, Saleh Alseekh, Alisdair R. Fernie, Zoran Nikoloski
Published in: Nature Communications, Issue 14, 2023, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-023-40644-9

Book chapters (2)

Radiometric determination of rubisco activation state and quantity in leaves

Author(s): Catherine J. Ashton, Rhiannon Page, Ana K.M. Lobo, Joana Amaral, Joao A. Siqueira, Douglas J. Orr, Elizabete Carmo-Silva
Published in: Methods in Enzymology, Carboxylases, 2024, Page(s) 323-351
Publisher: Elsevier
DOI: 10.1016/bs.mie.2024.10.018

Purification of Rubisco from Leaves

Author(s): Joana Amaral, Ana K. M. Lobo, Elizabete Carmo-Silva, Douglas J. Orr
Published in: Methods in Molecular Biology, Photosynthesis, 2024, Page(s) 417-426
Publisher: Springer US
DOI: 10.1007/978-1-0716-3790-6_22

Other (1)

Harnessing the optimization of enzyme catalytic rates in engineering of metabolic phenotypes

Author(s): Zahra Razaghi-Moghadam, Fayaz Soleymani Babadi, Zoran Nikoloski
Published in: PLOS Computational Biology, 2024
Publisher: Research Square Platform LLC
DOI: 10.21203/rs.3.rs-3915216/v1