Analysis, control, and engineering of spatiotemporal pattern formation

Project Information

ACE-OF-SPACE

Grant agreement ID: 863952

DOI

10.3030/863952

EC signature date 18 February 2020

Start date 1 July 2020

End date 30 June 2026

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost

€ 1 997 750,00

EU contribution

€ 1 997 750,00

Coordinated by

UNIVERSITAT KONSTANZ
Germany

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Publications

Peer reviewed articles (9)

EmbryoNet: using deep learning to link embryonic phenotypes to signaling pathways.

Author(s): Daniel Čapek, Matvey Safroshkin, Hernán Morales-Navarrete, Nikan Toulany, Grigory Arutyunov, Anica Kurzbach, Johanna Bihler, Julia Hagauer, Sebastian Kick, Felicity Jones, Ben Jordan, Patrick Müller
Published in: Nature Methods, Issue 20, 2023, Page(s) 815-823, ISSN 1548-7091
Publisher: Nature Publishing Group
DOI: 10.1038/s41592-023-01873-4

The design of functional proteins using tensorized energy calculations

Author(s): Kateryna Maksymenko, Andreas Maurer, Narges Aghaallaei, Caroline Barry, Natalia Borbarán-Bravo, Timo Ullrich, Tjeerd M.H. Dijkstra, Birte Hernandez Alvarez, Patrick Müller, Andrei N. Lupas, Julia Skokowa, Mohammad ElGamacy
Published in: Cell Reports Methods, Issue 3, 2023, Page(s) 100560, ISSN 2667-2375
Publisher: Cell Press
DOI: 10.1016/j.crmeth.2023.100560

Wie Tiere sich selbst konstruieren

Author(s): Daniel Čapek, Murat Ünalan, Patrick Müller
Published in: BIOspektrum, Issue 27, 2021, Page(s) 473-477, ISSN 0947-0867
Publisher: Spektrum Akademischer Verlag GmbH
DOI: 10.1007/s12268-021-1622-4

Optogenetic investigation of BMP target gene expression diversity

Author(s): Katherine W Rogers, Mohammad ElGamacy, Benjamin M Jordan, Patrick Müller
Published in: eLife, Issue 9, 2020, Page(s) e58641, ISSN 2050-084X
Publisher: eLife Sciences Publications
DOI: 10.7554/elife.58641

Analysis of SMAD1/5 target genes in a sea anemone reveals ZSWIM4-6 as a novel BMP signaling modulator

Author(s): Paul Knabl, Alexandra Schauer, Autumn P Pomreinke, Bob Zimmermann, Katherine W Rogers, Daniel Čapek, Patrick Müller, Grigory Genikhovich
Published in: eLife, Issue 13, 2024, ISSN 2050-084X
Publisher: eLife Sciences Publications
DOI: 10.7554/elife.80803

A simple and effective transplantation device for zebrafish embryos

Author(s): Gary Soh, Anna Kögler, Patrick Müller
Published in: J Vis Exp, Issue 174, 2021, ISSN 1940-087X
Publisher: MYJoVE Corporation
DOI: 10.3791/62767

Uncovering developmental time and tempo using deep learning

Author(s): Nikan Toulany, Hernán Morales-Navarrete, Daniel Čapek, Jannis Grathwohl, Murat Ünalan, Patrick Müller
Published in: Nature Methods, Issue 20, 2023, Page(s) 2000-2010, ISSN 1548-7091
Publisher: Nature Publishing Group
DOI: 10.1038/s41592-023-02083-8

Single-molecule tracking of Nodal and Lefty in live zebrafish embryos supports hindered diffusion model

Author(s): Timo Kuhn, Amit N. Landge, David Mörsdorf, Jonas Coßmann, Johanna Gerstenecker, Daniel Čapek, Patrick Müller, J. Christof M. Gebhardt
Published in: Nature Communications, Issue 6101, 2022, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-022-33704-z

Regulation of Nodal signaling propagation by receptor interactions and positive feedback

Author(s): David Mörsdorf; Anna C Kögler; Hannes Preiß; Daniel Čapek; Gary H Soh; Katherine W Rogers; Hernán Morales-Navarrete; María Almuedo-Castillo; Patrick Müller
Published in: eLife, Issue 1, 2022, ISSN 2050-084X
Publisher: eLife Sciences Publications
DOI: 10.7554/elife.66397

Non-peer reviewed articles (2)

AI identifies developmental defects and drug mechanisms in embryos

Author(s): Patrick Müller
Published in: Nature Methods, Issue 20, 2024, Page(s) 793-794, ISSN 1548-7091
Publisher: Nature Publishing Group
DOI: 10.1038/s41592-023-01872-5

Modes and motifs in multicellular communication

Author(s): Anna C. Kögler, Patrick Müller
Published in: Cell Systems, Issue 15, 2024, Page(s) 1-3, ISSN 2405-4712
Publisher: Cell Press
DOI: 10.1016/j.cels.2023.12.007