AQUAculture infrastructures for EXCELlence in EUropean fish research 3.0

Información del proyecto

AQUAEXCEL3.0

Identificador del acuerdo de subvención: 871108

DOI

10.3030/871108

Fecha de la firma de la CE 2 Marzo 2020

Fecha de inicio 1 Noviembre 2020

Fecha de finalización 31 Octubre 2025

Financiado con arreglo a

• EXCELLENT SCIENCE - Research Infrastructures

Coste total

€ 9 981 122,34

Aportación de la UE

€ 9 981 113,75

Coordinado por

INSTITUT NATIONAL DE RECHERCHE POUR L'AGRICULTURE, L'ALIMENTATION ET L'ENVIRONNEMENT
France

CORDIS proporciona enlaces a los documentos públicos y las publicaciones de los proyectos de los programas marco HORIZONTE.

Los enlaces a los documentos y las publicaciones de los proyectos del Séptimo Programa Marco, así como los enlaces a algunos tipos de resultados específicos, como conjuntos de datos y «software», se obtienen dinámicamente de OpenAIRE .

Resultado final

Documents, reports (8)

Portfolio of communication and dissemination resources and tools

Standard operating procedures (SOPs) for new cellular pre-screening tools

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Template for Impact Plan to collect project outputs

Review of biotelemetry in aquaculture research

Existing and emerging technologies available for welfare indicators monitoring

Preparation of specific recipients for GSC transfer

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Initial evaluation of the Access given

Survey of TNA users hosts reviewers and SP Members

Dissemination and Exploitation Plan

Other (3)

TNA Application Package including online application & review system

Full set of materials to promote TNA provide guidance on the RIs and means of access terms and conditions and expected outputs

TNA Monitoring & Reporting online System

ARIAbased system including a repository for project documents and publications

Standardized protocol for real-time microbiome monitoring in fish experimental facilities

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Publicaciones

Peer reviewed articles (37)

Isolation and Characterization of Highly Pure Type A Spermatogonia From Sterlet (Acipenser ruthenus) Using Flow-Cytometric Cell Sorting

Autores: Xuan Xie, Tomáš Tichopád, Galina Kislik, Lucie Langerová, Pavel Abaffy, Radek Šindelka, Roman Franěk, Michaela Fučíková, Christoph Steinbach, Mujahid Ali Shah, Ivo Šauman, Fan Chen and Martin Pšenička
Publicado en: Frontiers in Cell and Developmental Biology, 2021, ISSN 2296-634X
Editor: Frontiers Media
DOI: 10.3389/fcell.2021.772625

Production of common carp donor-derived offspring from goldfish surrogate broodstock

Autores: Roman Franěk, Vojtěch Kašpar, Mujahid Ali Shah, David Gela, Martin Pšenička
Publicado en: Aquaculture, Edición 534, 15 March 2021, 736252, 2021, ISSN 0044-8486
Editor: Elsevier BV
DOI: 10.1016/j.aquaculture.2020.736252

Understanding how high stocking densities and concurrent limited oxygen availability drive social cohesion and adaptive features in regulatory growth, antioxidant defense and lipid metabolism in farmed gilthead sea bream (Sparus aurata)

Autores: Holhorea PG, Naya-Català F, Belenguer Á, Calduch-Giner JA, Pérez-Sánchez J
Publicado en: Frontiers in Physiology, Edición 14, 2023, Página(s) 1272267, ISSN 1664-042X
Editor: Frontiers Research Foundation
DOI: 10.3389/fphys.2023.1272267

Microhomology-mediated end-joining Knock-In approaches to delete the allergenic domain of trout parvalbumin beta-1. Preliminary results in F0 animals and feedback

Autores: Veronique Lebret, Cecile Duret, Amaury Herpin, Pierre-yves Rescan
Publicado en: Open Research Europe, Edición 4, 2025, Página(s) 235, ISSN 2732-5121
Editor: F1000 Research Ltd
DOI: 10.12688/openreseurope.18223.1

Growth performance, swimming capacity, and fillet quality in rainbow trout fed a transgene-derived omega-3 and carotenoid-enriched oil

Autores: Pauline Wischhusen, Angelico Madaro, Malthe Hvas, Richard Broughton, Lihua Han, Karla Fernandez Quiroz, Kasidis Chaiyasut, Akhil Gupta, Rolf Erik Olsen, Stéphanie Fontagné-Dicharry, Johnathan A. Napier, Mónica B. Betancor
Publicado en: Aquaculture, Edición 604, 2025, Página(s) 742453, ISSN 0044-8486
Editor: Elsevier BV
DOI: 10.1016/j.aquaculture.2025.742453

Fish microbiomics: Strengths and limitations of MinION sequencing of gilthead sea bream (Sparus aurata) intestinal microbiota

Autores: Toxqui-Rodríguez S, Naya-Català F, Sitjà-Bobadilla A, Piazzon MA, Pérez-Sánchez J
Publicado en: Aquaculture, Edición 569, 2023, Página(s) 739388, ISSN 0044-8486
Editor: Elsevier BV
DOI: 10.1016/j.aquaculture.2023.739388

Who is the best surrogate for germ stem cell transplantation in fish?

Autores: Roman Franěk, Yu Cheng, Michaela Fučíková, Vojtěch Kašpar, Xuan Xie, Mujahid Ali Shah, Otomar Linhart, Ivo Šauman, Martin Pšenička
Publicado en: Aquaculture, Edición 549, 2022, ISSN 0044-8486
Editor: Elsevier BV
DOI: 10.1016/j.aquaculture.2021.737759

Cutting-Edge Methods in Teleost and Chondrichthyan Reproductive Biology

Autores: Alejandro S. Mechaly, Cynthia Awruch, Elsa Cabrita, Benjamín Costas, Jorge M.O. Fernandes, Victor Gallego, Jorge Hirt-Chabbert, Ioannis Konstantinidis, Catarina Olivera, Sandra Ramos-Júdez, Lourenço Ramos-Pinto, Elvira Fatsini
Publicado en: Reviews in Fisheries Science & Aquaculture, Edición 33, 2024, Página(s) 77-112, ISSN 2330-8249
Editor: Taylor and Francis Ltd.
DOI: 10.1080/23308249.2024.2377999

Moving Beyond Oxford Nanopore Standard Procedures: New Insights from Water and Multiple Fish Microbiomes

Autores: Ricardo Domingo-Bretón, Federico Moroni, Socorro Toxqui-Rodríguez, Álvaro Belenguer, M. Carla Piazzon, Jaume Pérez-Sánchez, Fernando Naya-Català
Publicado en: International Journal of Molecular Sciences, Edición 25, 2024, Página(s) 12603, ISSN 1422-0067
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms252312603

Cold-shock androgenesis in common carp (Cyprinus carpio)

Autores: Vojtěch Kašpar; Martin Hubálek; Martin Pšenička; Katsutoshi Arai; John B. Taggart; Roman Franěk
Publicado en: Aquaculture, Edición 548, 2022, ISSN 0044-8486
Editor: Elsevier BV
DOI: 10.1016/j.aquaculture.2021.737610

Salmonid Double-stranded RNA–Dependent Protein Kinase Activates Apoptosis and Inhibits Protein Synthesis

Autores: Lise Chaumont, Mathilde Peruzzi, François Huetz, Claudine Raffy, Jérôme Le Hir, Jules Minke, Pierre Boudinot, Bertrand Collet
Publicado en: The Journal of Immunology, Edición 213, 2025, Página(s) 700-717, ISSN 0022-1767
Editor: American Association of Immunologists
DOI: 10.4049/jimmunol.2400076

Are bold-shy personalities of European perch (Perca fluviatilis) linked to stress tolerance and immunity? A scope of harnessing fish behavior in aquaculture

Autores: Tatyana Gebauer, Radek Gebauer, Petr Císař, Jan Černý, Deepali Rahi Roy, Mahyar Zare, Marieke Verleih, Vlastimil Stejskal, Alexander Rebl
Publicado en: Fish & Shellfish Immunology, Edición online on 27th October 2023, 2023, Página(s) 109190, ISSN 1050-4648
Editor: Academic Press
DOI: 10.1016/j.fsi.2023.109190

Production of donor-derived Atlantic salmon progeny using allogeneic surrogate broodstock technology

Autores: Lene Kleppe, Diego Crespo, Hilal K. Güralp, Jean-Jacques Lareyre, Kai Ove Skaftnesmo, Fernando Ayllon, Thomas W.K. Fraser, Per Gunnar Fjelldal, Tom J. Hansen
Publicado en: Aquaculture, Edición 608, 2025, Página(s) 742752, ISSN 0044-8486
Editor: Elsevier BV
DOI: 10.1016/j.aquaculture.2025.742752

SAMBA: Structure-Learning of Aquaculture Microbiomes using a Bayesian Approach

Autores: Beatriz Soriano, Ahmed Ibrahem Hafez, Fernando Naya-Català, Federico Moroni, Roxana Andreea Moldovan, Socorro Toxqui-Rodríguez, M. Carla Piazzon, Vicente Arnau, Carlos Llorens, Jaume Pérez-Sánchez
Publicado en: Genes, Edición 14, 2024, Página(s) 1650, ISSN 2073-4425
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.1101/2022.12.30.522281

Mitochondria as indispensable yet replaceable components of germ plasm: insights into PGCs specification in sturgeons

Autores: Linan Gao, Roman Franěk, Tomáš Tichopád, Marek Rodina, David Gela, Radek Šindelka, Taiju Saito, Martin Pšenička
Publicado en: Reproduction, Edición 169, 2025, ISSN 1470-1626
Editor: Society for Reproduction and Fertility
DOI: 10.1530/rep-24-0441

A Web-Based Platform for Efficient and Robust Simulation of Aquaculture Systems using Integrated Intelligent Agents

Autores: Aya Saad, Biao Su, Finn Olav Bjørnson
Publicado en: Procedia Computer Science, Edición 225 (2023), 2023, Página(s) 4560-4569, ISSN 1877-0509
Editor: Elsevier
DOI: 10.1016/j.procs.2023.10.454

Unexpected regulatory functions of cyprinid Viperin on inflammation and metabolism

Autores: Lise Chaumont, Luc Jouneau, François Huetz, Doret R. van Muilekom, Mathilde Peruzzi, Claudine Raffy, Jérôme Le Hir, Jules Minke, Pierre Boudinot, Bertrand Collet
Publicado en: BMC Genomics, Edición 25, 2024, ISSN 1471-2164
Editor: BioMed Central
DOI: 10.1186/s12864-024-10566-x

Enhancement of zebrafish sperm production via a large body-sized surrogate with germ cell transplantation

Autores: Rigolin Nayak, Roman Franěk, Radek Šindelka, Martin Pšenička
Publicado en: Communication biology, Edición Volume 6, 14th April 2023, 2023, ISSN 2399-3642
Editor: Nature
DOI: 10.1038/s42003-023-04800-7

Effect of a loss of the mda5/ifih1 gene on the antiviral resistance in a Chinook salmon Oncorhynchus tshawytscha cell line

Autores: Catherine Collins, Lise Chaumont, Mathilde Peruzzi, Nedim Jamak, Pierre Boudinot, Julia Béjar, Patricia Moreno, Daniel Álvarez Torres, Bertrand Collet
Publicado en: PLOS ONE, Edición 19, 2024, Página(s) e0311283, ISSN 1932-6203
Editor: Public Library of Science
DOI: 10.1371/journal.pone.0311283

Effects of dietary co-exposure to fungal and herbal functional feed additives on immune parameters and microbial intestinal diversity in rainbow trout (Oncorhynchus mykiss)

Autores: Julia Mougin, Victor P. Lobanov, M. Danion, R. Roquigny, L. Goardon, T. Grard, T. Morin, L. Labbe, Alyssa Joyce
Publicado en: Fish & Shellfish Immunology, Edición Volume 137, June 2023, 108773, 2023, ISSN 1050-4648
Editor: Academic Press
DOI: 10.1016/j.fsi.2023.108773

Optimization of in vitro culture conditions of common carp germ cells for purpose of surrogate production

Autores: Xuan Xie; Roman Franěk; Martin Pšenička; Fan Chen; Vojtech Kašpar
Publicado en: Frontiers in Veterinary Science, Edición 9-2022, 2022, ISSN 2297-1769
Editor: Front.Vet.Sci.
DOI: 10.3389/fvets.2022.1036495

Effects of a plant-based diet from first feeding on the intestinal expression of nutrient sensors in rainbow trout (Oncorhynchus mykiss)

Autores: Cristina Fernández-Maestú, Jessica Calo, Maud Martinat, José L. Soengas, Jerome Roy, Ayelén M. Blanco
Publicado en: Aquaculture, Edición 599, 2025, Página(s) 742093, ISSN 0044-8486
Editor: Elsevier BV
DOI: 10.1016/j.aquaculture.2024.742093

Genome-wide comparative methylation analysis reveals the fate of germ stem cells after surrogate production in teleost

Autores: Rigolin Nayak, Roman Franěk, Audrey Laurent, Martin Pšenička
Publicado en: BMC Biology, Edición 22, 2024, ISSN 1741-7007
Editor: BioMed Central
DOI: 10.1186/s12915-024-01842-z

Xenotransplantation of European Eel (Anguilla anguilla) Spermatogonia in Zebrafish (Danio rerio) and European Sea Bass (Dicentrarchus labrax)

Autores: Marta Blanes-García, Zoran Marinović, Marina Morini, Alain Vergnet, Ákos Horváth, Juan F. Asturiano
Publicado en: Fishes, Edición 9, 2025, Página(s) 290, ISSN 2410-3888
Editor: MDPI AG
DOI: 10.3390/fishes9070290

Nanopore‐Enabled Microbiome Analysis: Investigating Environmental and Host‐Associated Samples in Rainbow Trout Aquaculture

Autores: Giulia Zarantonello, Argelia Cuenca
Publicado en: Current Protocols, Edición 4, 2024, ISSN 2691-1299
Editor: Wiley
DOI: 10.1002/cpz1.1069

Quantifying dominant bacterial genera detected in metagenomic data from fish eggs and larvae using genus-specific primers

Autores: Babak Najafpour, Patricia I.S. Pinto, A.V.M. Canario, Deborah M. Power
Publicado en: Microbiology Open, Edición 11, 2022, Página(s) e1274, ISSN 2045-8827
Editor: John Wiley and Sons Inc.
DOI: 10.1002/mbo3.1274

Behavioural Monitoring Underlines Habituation to Repeated Stressor Stimuli in Farmed Gilthead Sea Bream (Sparus aurata) Reared at a High Stocking Density

Autores: Paul G. Holhorea, Fernando Naya-Català, Ricardo Domingo-Bretón, Federico Moroni, Álvaro Belenguer, Josep À. Calduch-Giner, Jaume Pérez-Sánchez
Publicado en: Biology, Edición 13, 2024, Página(s) 879, ISSN 2079-7737
Editor: MDPI
DOI: 10.3390/biology13110879

Early-life environmental enrichment promotes positive animal welfare for juvenile Atlantic salmon (Salmo salar) in aquaculture research

Autores: Pamela M. Prentice, Mauro Chivite Alcalde, Petr Císař, Sonia Rey Planellas
Publicado en: Scientific Reports, Edición 15, 2025, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1038/s41598-025-88780-0

Fulvic acid modulates mucosal immunity in fish skin: Sustainable aquaculture solution or environmental risk factor?

Autores: Thora Lieke, Vlastimil Stejskal, Sascha Behrens, Christian E.W. Steinberg, Thomas Meinelt
Publicado en: Journal of Hazardous Materials, Edición 467, 2024, Página(s) 133737, ISSN 0304-3894
Editor: Elsevier BV
DOI: 10.1016/j.jhazmat.2024.133737

Effects of Hydrostatic Pressure Treatment of Newly Fertilized Eggs on the Ploidy Level and Karyotype of Pikeperch Sander lucioperca (Linnaeus, 1758)

Autores: Jenő Káldy; Eszter Patakiné Várkonyi; Georgina Fazekas; Zoltán Nagy; Zsuzsanna Jakabné Sándor; Katalin Bogár; Gyula Kovács; Mariann Molnár; Bence Lázár; Katalin Goda; Zsuzsanna Gyöngy; Zsuzsanna Ritter; Péter Nánási; Ákos Horváth; Uroš Ljubobratović
Publicado en: Life; Volume 11; Edición 12; Pages: 1296, Edición 1, 2021, ISSN 2075-1729
Editor: MDPI
DOI: 10.3390/life11121296

Effects of black soldier fly larvae oil on lipid metabolism, liver fatty acid composition, and plasma metabolite profiles in gilthead seabream juveniles

Autores: Sara Moutinho, Óscar Monroig, Helena Peres, Andrea Villena-Rodríguez, Rui Magalhães, Lina Pulido-Rodríguez, Giuliana Parisi, Aires Oliva-Teles
Publicado en: Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology, Edición 277, 2025, Página(s) 111069, ISSN 1096-4959
Editor: Elsevier BV
DOI: 10.1016/j.cbpb.2024.111069

Precision formulation, a new concept to improve dietary amino acid absorption based on the study of cationic amino acid transporters

Autores: Guillaume Morin, Karine Pinel, Cécile Heraud, Soizig Le-Garrec, Chloé Wayman, Karine Dias, Frédéric Terrier, Anthony Lanuque, Stéphanie Fontagné-Dicharry, Iban Seiliez, Florian Beaumatin
Publicado en: iScience, Edición 27, 2025, Página(s) 108894, ISSN 2589-0042
Editor: Elsevier BV
DOI: 10.1016/j.isci.2024.108894

Evaluation of Post-Larval Diets for Indoor Weaned Largemouth Bass (Micropterus salmoides)

Autores: Jovanka Lukić, Gergő Gyalog, Zoltán Horváth, Anita Annamária Szűcs, Tijana Ristović, Amarela Terzić-Vidojević, Zsuzsanna J. Sándor, Uroš Ljubobratović
Publicado en: Animals, Edición 13, 2023, Página(s) 3179, ISSN 2076-2615
Editor: MDPI AG
DOI: 10.3390/ani13203179

Differential Reshaping of Skin and Intestinal Microbiota by Stocking Density and Oxygen Availability in Farmed Gilthead Sea Bream (Sparus aurata): A Behavioral and Network-Based Integrative Approach

Autores: Toxqui-Rodríguez S, Holhorea PG, Naya-Català F, Calduch-Giner JÀ, Sitjà-Bobadilla A, Piazzon C, Pérez-Sánchez J
Publicado en: Microorganisms, Edición 12, 2024, Página(s) 1360, ISSN 2076-2607
Editor: MDPI
DOI: 10.3390/microorganisms12071360

Intestinal microbiota shifts by dietary intervention during extreme heat summer episodes in farmed gilthead sea bream (Sparus aurata)

Autores: R. Domingo-Bretón, S. Cools, F. Moroni, A. Belenguer, J.A. Calduch-Giner, E. Croes, P.G. Holhorea, F. Naya-Català, H. Boon, J. Pérez-Sánchez
Publicado en: Aquaculture Reports, Edición 40, 2025, Página(s) 102566, ISSN 2352-5134
Editor: Elsevier BV
DOI: 10.1016/j.aqrep.2024.102566

Revising the Impact and Prospects of Activity and Ventilation Rate Bio-Loggers for Tracking Welfare and Fish-Environment Interactions in Salmonids and Mediterranean Farmed Fish

Autores: Calduch-Giner J, Holhorea PG, Ferrer MÁ, Naya-Català F, Rosell-Moll E, Vega García C, Prunet P, Espmark ÅM, Leguen I, Kolarevic J, Vega A, Kerneis T, Goardon L, Afonso JM, Pérez-Sánchez J.
Publicado en: Frontiers in Marine Science, Edición 9, 2022, Página(s) 854888, ISSN 2296-7745
Editor: Frontiers Media
DOI: 10.3389/fmars.2022.854888

Are the Main Methionine Sources Equivalent? A Focus on DL-Methionine and DL-Methionine Hydroxy Analog Reveals Differences on Rainbow Trout Hepatic Cell Lines Functions

Autores: Karine Pinel, Cécile Heraud, Guillaume Morin, Karine Dias, Annaëlle Marcé, Linda Beauclair, Stéphanie Fontagné-Dicharry, Karthik   Masagounder, Martina Klünemann, Iban Seiliez and Florian Beaumatin
Publicado en: International Journal of Molecular Sciences, Edición Semimonthly, 2022, ISSN 1422-0067
Editor: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms23062935