AQUAculture infrastructures for EXCELlence in EUropean fish research 3.0

Informazioni relative al progetto

AQUAEXCEL3.0

ID dell’accordo di sovvenzione: 871108

DOI

10.3030/871108

Data della firma CE 2 Marzo 2020

Data di avvio 1 Novembre 2020

Data di completamento 31 Ottobre 2025

Finanziato da

• EXCELLENT SCIENCE - Research Infrastructures

Costo totale

€ 9 981 122,34

Contributo UE

€ 9 981 113,75

Coordinato da

INSTITUT NATIONAL DE RECHERCHE POUR L'AGRICULTURE, L'ALIMENTATION ET L'ENVIRONNEMENT
France

CORDIS fornisce collegamenti ai risultati finali pubblici e alle pubblicazioni dei progetti ORIZZONTE.

I link ai risultati e alle pubblicazioni dei progetti del 7° PQ, così come i link ad alcuni tipi di risultati specifici come dataset e software, sono recuperati dinamicamente da .OpenAIRE .

Risultati finali

Documents, reports (8)

Portfolio of communication and dissemination resources and tools

Standard operating procedures (SOPs) for new cellular pre-screening tools

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Template for Impact Plan to collect project outputs

Review of biotelemetry in aquaculture research

Existing and emerging technologies available for welfare indicators monitoring

Preparation of specific recipients for GSC transfer

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Initial evaluation of the Access given

Survey of TNA users hosts reviewers and SP Members

Dissemination and Exploitation Plan

Other (3)

TNA Application Package including online application & review system

Full set of materials to promote TNA provide guidance on the RIs and means of access terms and conditions and expected outputs

TNA Monitoring & Reporting online System

ARIAbased system including a repository for project documents and publications

Standardized protocol for real-time microbiome monitoring in fish experimental facilities

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Pubblicazioni

Peer reviewed articles (37)

Isolation and Characterization of Highly Pure Type A Spermatogonia From Sterlet (Acipenser ruthenus) Using Flow-Cytometric Cell Sorting

Autori: Xuan Xie, Tomáš Tichopád, Galina Kislik, Lucie Langerová, Pavel Abaffy, Radek Šindelka, Roman Franěk, Michaela Fučíková, Christoph Steinbach, Mujahid Ali Shah, Ivo Šauman, Fan Chen and Martin Pšenička
Pubblicato in: Frontiers in Cell and Developmental Biology, 2021, ISSN 2296-634X
Editore: Frontiers Media
DOI: 10.3389/fcell.2021.772625

Production of common carp donor-derived offspring from goldfish surrogate broodstock

Autori: Roman Franěk, Vojtěch Kašpar, Mujahid Ali Shah, David Gela, Martin Pšenička
Pubblicato in: Aquaculture, Numero 534, 15 March 2021, 736252, 2021, ISSN 0044-8486
Editore: Elsevier BV
DOI: 10.1016/j.aquaculture.2020.736252

Understanding how high stocking densities and concurrent limited oxygen availability drive social cohesion and adaptive features in regulatory growth, antioxidant defense and lipid metabolism in farmed gilthead sea bream (Sparus aurata)

Autori: Holhorea PG, Naya-Català F, Belenguer Á, Calduch-Giner JA, Pérez-Sánchez J
Pubblicato in: Frontiers in Physiology, Numero 14, 2023, Pagina/e 1272267, ISSN 1664-042X
Editore: Frontiers Research Foundation
DOI: 10.3389/fphys.2023.1272267

Microhomology-mediated end-joining Knock-In approaches to delete the allergenic domain of trout parvalbumin beta-1. Preliminary results in F0 animals and feedback

Autori: Veronique Lebret, Cecile Duret, Amaury Herpin, Pierre-yves Rescan
Pubblicato in: Open Research Europe, Numero 4, 2025, Pagina/e 235, ISSN 2732-5121
Editore: F1000 Research Ltd
DOI: 10.12688/openreseurope.18223.1

Growth performance, swimming capacity, and fillet quality in rainbow trout fed a transgene-derived omega-3 and carotenoid-enriched oil

Autori: Pauline Wischhusen, Angelico Madaro, Malthe Hvas, Richard Broughton, Lihua Han, Karla Fernandez Quiroz, Kasidis Chaiyasut, Akhil Gupta, Rolf Erik Olsen, Stéphanie Fontagné-Dicharry, Johnathan A. Napier, Mónica B. Betancor
Pubblicato in: Aquaculture, Numero 604, 2025, Pagina/e 742453, ISSN 0044-8486
Editore: Elsevier BV
DOI: 10.1016/j.aquaculture.2025.742453

Fish microbiomics: Strengths and limitations of MinION sequencing of gilthead sea bream (Sparus aurata) intestinal microbiota

Autori: Toxqui-Rodríguez S, Naya-Català F, Sitjà-Bobadilla A, Piazzon MA, Pérez-Sánchez J
Pubblicato in: Aquaculture, Numero 569, 2023, Pagina/e 739388, ISSN 0044-8486
Editore: Elsevier BV
DOI: 10.1016/j.aquaculture.2023.739388

Who is the best surrogate for germ stem cell transplantation in fish?

Autori: Roman Franěk, Yu Cheng, Michaela Fučíková, Vojtěch Kašpar, Xuan Xie, Mujahid Ali Shah, Otomar Linhart, Ivo Šauman, Martin Pšenička
Pubblicato in: Aquaculture, Numero 549, 2022, ISSN 0044-8486
Editore: Elsevier BV
DOI: 10.1016/j.aquaculture.2021.737759

Cutting-Edge Methods in Teleost and Chondrichthyan Reproductive Biology

Autori: Alejandro S. Mechaly, Cynthia Awruch, Elsa Cabrita, Benjamín Costas, Jorge M.O. Fernandes, Victor Gallego, Jorge Hirt-Chabbert, Ioannis Konstantinidis, Catarina Olivera, Sandra Ramos-Júdez, Lourenço Ramos-Pinto, Elvira Fatsini
Pubblicato in: Reviews in Fisheries Science & Aquaculture, Numero 33, 2024, Pagina/e 77-112, ISSN 2330-8249
Editore: Taylor and Francis Ltd.
DOI: 10.1080/23308249.2024.2377999

Moving Beyond Oxford Nanopore Standard Procedures: New Insights from Water and Multiple Fish Microbiomes

Autori: Ricardo Domingo-Bretón, Federico Moroni, Socorro Toxqui-Rodríguez, Álvaro Belenguer, M. Carla Piazzon, Jaume Pérez-Sánchez, Fernando Naya-Català
Pubblicato in: International Journal of Molecular Sciences, Numero 25, 2024, Pagina/e 12603, ISSN 1422-0067
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms252312603

Cold-shock androgenesis in common carp (Cyprinus carpio)

Autori: Vojtěch Kašpar; Martin Hubálek; Martin Pšenička; Katsutoshi Arai; John B. Taggart; Roman Franěk
Pubblicato in: Aquaculture, Numero 548, 2022, ISSN 0044-8486
Editore: Elsevier BV
DOI: 10.1016/j.aquaculture.2021.737610

Salmonid Double-stranded RNA–Dependent Protein Kinase Activates Apoptosis and Inhibits Protein Synthesis

Autori: Lise Chaumont, Mathilde Peruzzi, François Huetz, Claudine Raffy, Jérôme Le Hir, Jules Minke, Pierre Boudinot, Bertrand Collet
Pubblicato in: The Journal of Immunology, Numero 213, 2025, Pagina/e 700-717, ISSN 0022-1767
Editore: American Association of Immunologists
DOI: 10.4049/jimmunol.2400076

Are bold-shy personalities of European perch (Perca fluviatilis) linked to stress tolerance and immunity? A scope of harnessing fish behavior in aquaculture

Autori: Tatyana Gebauer, Radek Gebauer, Petr Císař, Jan Černý, Deepali Rahi Roy, Mahyar Zare, Marieke Verleih, Vlastimil Stejskal, Alexander Rebl
Pubblicato in: Fish & Shellfish Immunology, Numero online on 27th October 2023, 2023, Pagina/e 109190, ISSN 1050-4648
Editore: Academic Press
DOI: 10.1016/j.fsi.2023.109190

Production of donor-derived Atlantic salmon progeny using allogeneic surrogate broodstock technology

Autori: Lene Kleppe, Diego Crespo, Hilal K. Güralp, Jean-Jacques Lareyre, Kai Ove Skaftnesmo, Fernando Ayllon, Thomas W.K. Fraser, Per Gunnar Fjelldal, Tom J. Hansen
Pubblicato in: Aquaculture, Numero 608, 2025, Pagina/e 742752, ISSN 0044-8486
Editore: Elsevier BV
DOI: 10.1016/j.aquaculture.2025.742752

SAMBA: Structure-Learning of Aquaculture Microbiomes using a Bayesian Approach

Autori: Beatriz Soriano, Ahmed Ibrahem Hafez, Fernando Naya-Català, Federico Moroni, Roxana Andreea Moldovan, Socorro Toxqui-Rodríguez, M. Carla Piazzon, Vicente Arnau, Carlos Llorens, Jaume Pérez-Sánchez
Pubblicato in: Genes, Numero 14, 2024, Pagina/e 1650, ISSN 2073-4425
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.1101/2022.12.30.522281

Mitochondria as indispensable yet replaceable components of germ plasm: insights into PGCs specification in sturgeons

Autori: Linan Gao, Roman Franěk, Tomáš Tichopád, Marek Rodina, David Gela, Radek Šindelka, Taiju Saito, Martin Pšenička
Pubblicato in: Reproduction, Numero 169, 2025, ISSN 1470-1626
Editore: Society for Reproduction and Fertility
DOI: 10.1530/rep-24-0441

A Web-Based Platform for Efficient and Robust Simulation of Aquaculture Systems using Integrated Intelligent Agents

Autori: Aya Saad, Biao Su, Finn Olav Bjørnson
Pubblicato in: Procedia Computer Science, Numero 225 (2023), 2023, Pagina/e 4560-4569, ISSN 1877-0509
Editore: Elsevier
DOI: 10.1016/j.procs.2023.10.454

Unexpected regulatory functions of cyprinid Viperin on inflammation and metabolism

Autori: Lise Chaumont, Luc Jouneau, François Huetz, Doret R. van Muilekom, Mathilde Peruzzi, Claudine Raffy, Jérôme Le Hir, Jules Minke, Pierre Boudinot, Bertrand Collet
Pubblicato in: BMC Genomics, Numero 25, 2024, ISSN 1471-2164
Editore: BioMed Central
DOI: 10.1186/s12864-024-10566-x

Enhancement of zebrafish sperm production via a large body-sized surrogate with germ cell transplantation

Autori: Rigolin Nayak, Roman Franěk, Radek Šindelka, Martin Pšenička
Pubblicato in: Communication biology, Numero Volume 6, 14th April 2023, 2023, ISSN 2399-3642
Editore: Nature
DOI: 10.1038/s42003-023-04800-7

Effect of a loss of the mda5/ifih1 gene on the antiviral resistance in a Chinook salmon Oncorhynchus tshawytscha cell line

Autori: Catherine Collins, Lise Chaumont, Mathilde Peruzzi, Nedim Jamak, Pierre Boudinot, Julia Béjar, Patricia Moreno, Daniel Álvarez Torres, Bertrand Collet
Pubblicato in: PLOS ONE, Numero 19, 2024, Pagina/e e0311283, ISSN 1932-6203
Editore: Public Library of Science
DOI: 10.1371/journal.pone.0311283

Effects of dietary co-exposure to fungal and herbal functional feed additives on immune parameters and microbial intestinal diversity in rainbow trout (Oncorhynchus mykiss)

Autori: Julia Mougin, Victor P. Lobanov, M. Danion, R. Roquigny, L. Goardon, T. Grard, T. Morin, L. Labbe, Alyssa Joyce
Pubblicato in: Fish & Shellfish Immunology, Numero Volume 137, June 2023, 108773, 2023, ISSN 1050-4648
Editore: Academic Press
DOI: 10.1016/j.fsi.2023.108773

Optimization of in vitro culture conditions of common carp germ cells for purpose of surrogate production

Autori: Xuan Xie; Roman Franěk; Martin Pšenička; Fan Chen; Vojtech Kašpar
Pubblicato in: Frontiers in Veterinary Science, Numero 9-2022, 2022, ISSN 2297-1769
Editore: Front.Vet.Sci.
DOI: 10.3389/fvets.2022.1036495

Effects of a plant-based diet from first feeding on the intestinal expression of nutrient sensors in rainbow trout (Oncorhynchus mykiss)

Autori: Cristina Fernández-Maestú, Jessica Calo, Maud Martinat, José L. Soengas, Jerome Roy, Ayelén M. Blanco
Pubblicato in: Aquaculture, Numero 599, 2025, Pagina/e 742093, ISSN 0044-8486
Editore: Elsevier BV
DOI: 10.1016/j.aquaculture.2024.742093

Genome-wide comparative methylation analysis reveals the fate of germ stem cells after surrogate production in teleost

Autori: Rigolin Nayak, Roman Franěk, Audrey Laurent, Martin Pšenička
Pubblicato in: BMC Biology, Numero 22, 2024, ISSN 1741-7007
Editore: BioMed Central
DOI: 10.1186/s12915-024-01842-z

Xenotransplantation of European Eel (Anguilla anguilla) Spermatogonia in Zebrafish (Danio rerio) and European Sea Bass (Dicentrarchus labrax)

Autori: Marta Blanes-García, Zoran Marinović, Marina Morini, Alain Vergnet, Ákos Horváth, Juan F. Asturiano
Pubblicato in: Fishes, Numero 9, 2025, Pagina/e 290, ISSN 2410-3888
Editore: MDPI AG
DOI: 10.3390/fishes9070290

Nanopore‐Enabled Microbiome Analysis: Investigating Environmental and Host‐Associated Samples in Rainbow Trout Aquaculture

Autori: Giulia Zarantonello, Argelia Cuenca
Pubblicato in: Current Protocols, Numero 4, 2024, ISSN 2691-1299
Editore: Wiley
DOI: 10.1002/cpz1.1069

Quantifying dominant bacterial genera detected in metagenomic data from fish eggs and larvae using genus-specific primers

Autori: Babak Najafpour, Patricia I.S. Pinto, A.V.M. Canario, Deborah M. Power
Pubblicato in: Microbiology Open, Numero 11, 2022, Pagina/e e1274, ISSN 2045-8827
Editore: John Wiley and Sons Inc.
DOI: 10.1002/mbo3.1274

Behavioural Monitoring Underlines Habituation to Repeated Stressor Stimuli in Farmed Gilthead Sea Bream (Sparus aurata) Reared at a High Stocking Density

Autori: Paul G. Holhorea, Fernando Naya-Català, Ricardo Domingo-Bretón, Federico Moroni, Álvaro Belenguer, Josep À. Calduch-Giner, Jaume Pérez-Sánchez
Pubblicato in: Biology, Numero 13, 2024, Pagina/e 879, ISSN 2079-7737
Editore: MDPI
DOI: 10.3390/biology13110879

Early-life environmental enrichment promotes positive animal welfare for juvenile Atlantic salmon (Salmo salar) in aquaculture research

Autori: Pamela M. Prentice, Mauro Chivite Alcalde, Petr Císař, Sonia Rey Planellas
Pubblicato in: Scientific Reports, Numero 15, 2025, ISSN 2045-2322
Editore: Nature Publishing Group
DOI: 10.1038/s41598-025-88780-0

Fulvic acid modulates mucosal immunity in fish skin: Sustainable aquaculture solution or environmental risk factor?

Autori: Thora Lieke, Vlastimil Stejskal, Sascha Behrens, Christian E.W. Steinberg, Thomas Meinelt
Pubblicato in: Journal of Hazardous Materials, Numero 467, 2024, Pagina/e 133737, ISSN 0304-3894
Editore: Elsevier BV
DOI: 10.1016/j.jhazmat.2024.133737

Effects of Hydrostatic Pressure Treatment of Newly Fertilized Eggs on the Ploidy Level and Karyotype of Pikeperch Sander lucioperca (Linnaeus, 1758)

Autori: Jenő Káldy; Eszter Patakiné Várkonyi; Georgina Fazekas; Zoltán Nagy; Zsuzsanna Jakabné Sándor; Katalin Bogár; Gyula Kovács; Mariann Molnár; Bence Lázár; Katalin Goda; Zsuzsanna Gyöngy; Zsuzsanna Ritter; Péter Nánási; Ákos Horváth; Uroš Ljubobratović
Pubblicato in: Life; Volume 11; Numero 12; Pages: 1296, Numero 1, 2021, ISSN 2075-1729
Editore: MDPI
DOI: 10.3390/life11121296

Effects of black soldier fly larvae oil on lipid metabolism, liver fatty acid composition, and plasma metabolite profiles in gilthead seabream juveniles

Autori: Sara Moutinho, Óscar Monroig, Helena Peres, Andrea Villena-Rodríguez, Rui Magalhães, Lina Pulido-Rodríguez, Giuliana Parisi, Aires Oliva-Teles
Pubblicato in: Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology, Numero 277, 2025, Pagina/e 111069, ISSN 1096-4959
Editore: Elsevier BV
DOI: 10.1016/j.cbpb.2024.111069

Precision formulation, a new concept to improve dietary amino acid absorption based on the study of cationic amino acid transporters

Autori: Guillaume Morin, Karine Pinel, Cécile Heraud, Soizig Le-Garrec, Chloé Wayman, Karine Dias, Frédéric Terrier, Anthony Lanuque, Stéphanie Fontagné-Dicharry, Iban Seiliez, Florian Beaumatin
Pubblicato in: iScience, Numero 27, 2025, Pagina/e 108894, ISSN 2589-0042
Editore: Elsevier BV
DOI: 10.1016/j.isci.2024.108894

Evaluation of Post-Larval Diets for Indoor Weaned Largemouth Bass (Micropterus salmoides)

Autori: Jovanka Lukić, Gergő Gyalog, Zoltán Horváth, Anita Annamária Szűcs, Tijana Ristović, Amarela Terzić-Vidojević, Zsuzsanna J. Sándor, Uroš Ljubobratović
Pubblicato in: Animals, Numero 13, 2023, Pagina/e 3179, ISSN 2076-2615
Editore: MDPI AG
DOI: 10.3390/ani13203179

Differential Reshaping of Skin and Intestinal Microbiota by Stocking Density and Oxygen Availability in Farmed Gilthead Sea Bream (Sparus aurata): A Behavioral and Network-Based Integrative Approach

Autori: Toxqui-Rodríguez S, Holhorea PG, Naya-Català F, Calduch-Giner JÀ, Sitjà-Bobadilla A, Piazzon C, Pérez-Sánchez J
Pubblicato in: Microorganisms, Numero 12, 2024, Pagina/e 1360, ISSN 2076-2607
Editore: MDPI
DOI: 10.3390/microorganisms12071360

Intestinal microbiota shifts by dietary intervention during extreme heat summer episodes in farmed gilthead sea bream (Sparus aurata)

Autori: R. Domingo-Bretón, S. Cools, F. Moroni, A. Belenguer, J.A. Calduch-Giner, E. Croes, P.G. Holhorea, F. Naya-Català, H. Boon, J. Pérez-Sánchez
Pubblicato in: Aquaculture Reports, Numero 40, 2025, Pagina/e 102566, ISSN 2352-5134
Editore: Elsevier BV
DOI: 10.1016/j.aqrep.2024.102566

Revising the Impact and Prospects of Activity and Ventilation Rate Bio-Loggers for Tracking Welfare and Fish-Environment Interactions in Salmonids and Mediterranean Farmed Fish

Autori: Calduch-Giner J, Holhorea PG, Ferrer MÁ, Naya-Català F, Rosell-Moll E, Vega García C, Prunet P, Espmark ÅM, Leguen I, Kolarevic J, Vega A, Kerneis T, Goardon L, Afonso JM, Pérez-Sánchez J.
Pubblicato in: Frontiers in Marine Science, Numero 9, 2022, Pagina/e 854888, ISSN 2296-7745
Editore: Frontiers Media
DOI: 10.3389/fmars.2022.854888

Are the Main Methionine Sources Equivalent? A Focus on DL-Methionine and DL-Methionine Hydroxy Analog Reveals Differences on Rainbow Trout Hepatic Cell Lines Functions

Autori: Karine Pinel, Cécile Heraud, Guillaume Morin, Karine Dias, Annaëlle Marcé, Linda Beauclair, Stéphanie Fontagné-Dicharry, Karthik   Masagounder, Martina Klünemann, Iban Seiliez and Florian Beaumatin
Pubblicato in: International Journal of Molecular Sciences, Numero Semimonthly, 2022, ISSN 1422-0067
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms23062935