AQUAculture infrastructures for EXCELlence in EUropean fish research 3.0

Informacje na temat projektu

AQUAEXCEL3.0

Identyfikator umowy o grant: 871108

DOI

10.3030/871108

Projekt został zamknięty

Data podpisania przez KE 2 Marca 2020

Data rozpoczęcia 1 Listopada 2020

Data zakończenia 31 Października 2025

Finansowanie w ramach

• EXCELLENT SCIENCE - Research Infrastructures

Koszt całkowity

€ 9 981 122,34

Wkład UE

€ 9 981 113,75

Koordynowany przez

INSTITUT NATIONAL DE RECHERCHE POUR L'AGRICULTURE, L'ALIMENTATION ET L'ENVIRONNEMENT
France

CORDIS oferuje możliwość skorzystania z odnośników do publicznie dostępnych publikacji i rezultatów projektów realizowanych w ramach programów ramowych HORYZONT.

Odnośniki do rezultatów i publikacji związanych z poszczególnymi projektami 7PR, a także odnośniki do niektórych konkretnych kategorii wyników, takich jak zbiory danych i oprogramowanie, są dynamicznie pobierane z systemu OpenAIRE .

Rezultaty

Documents, reports (37)

Analysis of access provided by NOFIMA NRSA facility: types and users

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Portfolio of communication and dissemination resources and tools

Register of High-Impact Outputs

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Standard operating procedures (SOPs) for new cellular pre-screening tools

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Analysis of access provided by NAIK aquaculture experimental facilities: types and users

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Template for Impact Plan to collect project outputs

Beneficial effects of physical enrichment and training on key European species used in aquaculture

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Analysis of access provided by ULPGC Marine Science and Technology Park: types and users

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Analysis of access provided by IEO Aquaculture Facilities: types and users

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Review of biotelemetry in aquaculture research

Analysis of access provided by CSIC Research facilities: types and users

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Analysis of access provided by UoS Institute of Aquaculture: types and users

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Report on sustainability actions

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General determination of welfare indicators across the fish species using the monitoring technologies in tanks and cages

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Analysis of access provided by JU FFPW installations: types and users

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Analysis of access provided by IMR Matre infrastructure: types and users

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Analysis of access provided by INRA Aquaculture infrastructure: types and users

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New methods for post-processing biotelemetry data in aquaculture

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Identification of biomarkers and in vitro GSC amplification

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Analysis of access provided by HCMR-Mediterranean aquaculture experimental facilities: types and users

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GSC storage and evaluation of GSC cryo-damage

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Final evaluation of the Access given

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Analysis of access provided by CCMAR Infrastructure: types and users

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Interim evaluation of the Access given

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Analysis of access provided by UNITO-DISAFA Infrastructures

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Analysis of access provided by WU aquaculture experimental facilities: types and users

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Analysis of access provided by SINTEF Ocean Aquaculture facilities: types and users

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Analysis of access provided by NTNU Sealab: types and users

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Analysis of access provided by DTU-AQUA Infrastructure: types and users

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Guidelines on important operational welfare indicators for key European species used in aquaculture research

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Existing and emerging technologies available for welfare indicators monitoring

Analysis of access provided by WR RAS-Fish performance Infrastructure: types and users

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Preparation of specific recipients for GSC transfer

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Analysis of access provided by IFREMER infrastructure: types and users

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Initial evaluation of the Access given

Survey of TNA users hosts reviewers and SP Members

Analysis of access provided by UL Experimental Platform in Aquaculture: types and users

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Dissemination and Exploitation Plan

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Websites, patent fillings, videos etc. (1)

Success stories

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Other (8)

Final models for water quality

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Virtual Laboratory version 3.0 with Artificial Agent 1.0

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TNA Application Package including online application & review system

Full set of materials to promote TNA provide guidance on the RIs and means of access terms and conditions and expected outputs

Modelled flow fields, turbulence and residence time in experimental units

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Final model for fish behaviour

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TNA Monitoring & Reporting online System

ARIAbased system including a repository for project documents and publications

Final models for growth

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Standardized protocol for real-time microbiome monitoring in fish experimental facilities

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Publikacje

Peer reviewed articles (39)

Isolation and Characterization of Highly Pure Type A Spermatogonia From Sterlet (Acipenser ruthenus) Using Flow-Cytometric Cell Sorting

Autorzy: Xuan Xie, Tomáš Tichopád, Galina Kislik, Lucie Langerová, Pavel Abaffy, Radek Šindelka, Roman Franěk, Michaela Fučíková, Christoph Steinbach, Mujahid Ali Shah, Ivo Šauman, Fan Chen and Martin Pšenička
Opublikowane w: Frontiers in Cell and Developmental Biology, 2021, ISSN 2296-634X
Wydawca: Frontiers Media
DOI: 10.3389/fcell.2021.772625

Production of common carp donor-derived offspring from goldfish surrogate broodstock

Autorzy: Roman Franěk, Vojtěch Kašpar, Mujahid Ali Shah, David Gela, Martin Pšenička
Opublikowane w: Aquaculture, Numer 534, 15 March 2021, 736252, 2021, ISSN 0044-8486
Wydawca: Elsevier BV
DOI: 10.1016/j.aquaculture.2020.736252

Understanding how high stocking densities and concurrent limited oxygen availability drive social cohesion and adaptive features in regulatory growth, antioxidant defense and lipid metabolism in farmed gilthead sea bream (Sparus aurata)

Autorzy: Holhorea PG, Naya-Català F, Belenguer Á, Calduch-Giner JA, Pérez-Sánchez J
Opublikowane w: Frontiers in Physiology, Numer 14, 2023, Strona(/y) 1272267, ISSN 1664-042X
Wydawca: Frontiers Research Foundation
DOI: 10.3389/fphys.2023.1272267

Microhomology-mediated end-joining Knock-In approaches to delete the allergenic domain of trout parvalbumin beta-1. Preliminary results in F0 animals and feedback

Autorzy: Veronique Lebret, Cecile Duret, Amaury Herpin, Pierre-yves Rescan
Opublikowane w: Open Research Europe, Numer 4, 2025, Strona(/y) 235, ISSN 2732-5121
Wydawca: F1000 Research Ltd
DOI: 10.12688/openreseurope.18223.1

Growth performance, swimming capacity, and fillet quality in rainbow trout fed a transgene-derived omega-3 and carotenoid-enriched oil

Autorzy: Pauline Wischhusen, Angelico Madaro, Malthe Hvas, Richard Broughton, Lihua Han, Karla Fernandez Quiroz, Kasidis Chaiyasut, Akhil Gupta, Rolf Erik Olsen, Stéphanie Fontagné-Dicharry, Johnathan A. Napier, Mónica B. Betancor
Opublikowane w: Aquaculture, Numer 604, 2025, Strona(/y) 742453, ISSN 0044-8486
Wydawca: Elsevier BV
DOI: 10.1016/j.aquaculture.2025.742453

Cryopreservation of Sturgeon Egg Mitochondria and Their Replacement in Germline: A Novel Strategy for Maternal Genetic Preservation in Sturgeons

Autorzy: Linan Gao, Roman Franěk, Martin Pšenička
Opublikowane w: Theriogenology, Numer Volume 240, 1 July 2025, 2025, ISSN 0093-691X
Wydawca: Elsevier BV
DOI: 10.2139/ssrn.5123052

Fish microbiomics: Strengths and limitations of MinION sequencing of gilthead sea bream (Sparus aurata) intestinal microbiota

Autorzy: Toxqui-Rodríguez S, Naya-Català F, Sitjà-Bobadilla A, Piazzon MA, Pérez-Sánchez J
Opublikowane w: Aquaculture, Numer 569, 2023, Strona(/y) 739388, ISSN 0044-8486
Wydawca: Elsevier BV
DOI: 10.1016/j.aquaculture.2023.739388

Who is the best surrogate for germ stem cell transplantation in fish?

Autorzy: Roman Franěk, Yu Cheng, Michaela Fučíková, Vojtěch Kašpar, Xuan Xie, Mujahid Ali Shah, Otomar Linhart, Ivo Šauman, Martin Pšenička
Opublikowane w: Aquaculture, Numer 549, 2022, ISSN 0044-8486
Wydawca: Elsevier BV
DOI: 10.1016/j.aquaculture.2021.737759

Cutting-Edge Methods in Teleost and Chondrichthyan Reproductive Biology

Autorzy: Alejandro S. Mechaly, Cynthia Awruch, Elsa Cabrita, Benjamín Costas, Jorge M.O. Fernandes, Victor Gallego, Jorge Hirt-Chabbert, Ioannis Konstantinidis, Catarina Olivera, Sandra Ramos-Júdez, Lourenço Ramos-Pinto, Elvira Fatsini
Opublikowane w: Reviews in Fisheries Science & Aquaculture, Numer 33, 2024, Strona(/y) 77-112, ISSN 2330-8249
Wydawca: Taylor and Francis Ltd.
DOI: 10.1080/23308249.2024.2377999

Moving Beyond Oxford Nanopore Standard Procedures: New Insights from Water and Multiple Fish Microbiomes

Autorzy: Ricardo Domingo-Bretón, Federico Moroni, Socorro Toxqui-Rodríguez, Álvaro Belenguer, M. Carla Piazzon, Jaume Pérez-Sánchez, Fernando Naya-Català
Opublikowane w: International Journal of Molecular Sciences, Numer 25, 2024, Strona(/y) 12603, ISSN 1422-0067
Wydawca: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms252312603

Cold-shock androgenesis in common carp (Cyprinus carpio)

Autorzy: Vojtěch Kašpar; Martin Hubálek; Martin Pšenička; Katsutoshi Arai; John B. Taggart; Roman Franěk
Opublikowane w: Aquaculture, Numer 548, 2022, ISSN 0044-8486
Wydawca: Elsevier BV
DOI: 10.1016/j.aquaculture.2021.737610

Salmonid Double-stranded RNA–Dependent Protein Kinase Activates Apoptosis and Inhibits Protein Synthesis

Autorzy: Lise Chaumont, Mathilde Peruzzi, François Huetz, Claudine Raffy, Jérôme Le Hir, Jules Minke, Pierre Boudinot, Bertrand Collet
Opublikowane w: The Journal of Immunology, Numer 213, 2025, Strona(/y) 700-717, ISSN 0022-1767
Wydawca: American Association of Immunologists
DOI: 10.4049/jimmunol.2400076

Are bold-shy personalities of European perch (Perca fluviatilis) linked to stress tolerance and immunity? A scope of harnessing fish behavior in aquaculture

Autorzy: Tatyana Gebauer, Radek Gebauer, Petr Císař, Jan Černý, Deepali Rahi Roy, Mahyar Zare, Marieke Verleih, Vlastimil Stejskal, Alexander Rebl
Opublikowane w: Fish & Shellfish Immunology, Numer online on 27th October 2023, 2023, Strona(/y) 109190, ISSN 1050-4648
Wydawca: Academic Press
DOI: 10.1016/j.fsi.2023.109190

Production of donor-derived Atlantic salmon progeny using allogeneic surrogate broodstock technology

Autorzy: Lene Kleppe, Diego Crespo, Hilal K. Güralp, Jean-Jacques Lareyre, Kai Ove Skaftnesmo, Fernando Ayllon, Thomas W.K. Fraser, Per Gunnar Fjelldal, Tom J. Hansen
Opublikowane w: Aquaculture, Numer 608, 2025, Strona(/y) 742752, ISSN 0044-8486
Wydawca: Elsevier BV
DOI: 10.1016/j.aquaculture.2025.742752

SAMBA: Structure-Learning of Aquaculture Microbiomes using a Bayesian Approach

Autorzy: Beatriz Soriano, Ahmed Ibrahem Hafez, Fernando Naya-Català, Federico Moroni, Roxana Andreea Moldovan, Socorro Toxqui-Rodríguez, M. Carla Piazzon, Vicente Arnau, Carlos Llorens, Jaume Pérez-Sánchez
Opublikowane w: Genes, Numer 14, 2024, Strona(/y) 1650, ISSN 2073-4425
Wydawca: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.1101/2022.12.30.522281

Mitochondria as indispensable yet replaceable components of germ plasm: insights into PGCs specification in sturgeons

Autorzy: Linan Gao, Roman Franěk, Tomáš Tichopád, Marek Rodina, David Gela, Radek Šindelka, Taiju Saito, Martin Pšenička
Opublikowane w: Reproduction, Numer 169, 2025, ISSN 1470-1626
Wydawca: Society for Reproduction and Fertility
DOI: 10.1530/rep-24-0441

A Web-Based Platform for Efficient and Robust Simulation of Aquaculture Systems using Integrated Intelligent Agents

Autorzy: Aya Saad, Biao Su, Finn Olav Bjørnson
Opublikowane w: Procedia Computer Science, Numer 225 (2023), 2023, Strona(/y) 4560-4569, ISSN 1877-0509
Wydawca: Elsevier
DOI: 10.1016/j.procs.2023.10.454

Unexpected regulatory functions of cyprinid Viperin on inflammation and metabolism

Autorzy: Lise Chaumont, Luc Jouneau, François Huetz, Doret R. van Muilekom, Mathilde Peruzzi, Claudine Raffy, Jérôme Le Hir, Jules Minke, Pierre Boudinot, Bertrand Collet
Opublikowane w: BMC Genomics, Numer 25, 2024, ISSN 1471-2164
Wydawca: BioMed Central
DOI: 10.1186/s12864-024-10566-x

Enhancement of zebrafish sperm production via a large body-sized surrogate with germ cell transplantation

Autorzy: Rigolin Nayak, Roman Franěk, Radek Šindelka, Martin Pšenička
Opublikowane w: Communication biology, Numer Volume 6, 14th April 2023, 2023, ISSN 2399-3642
Wydawca: Nature
DOI: 10.1038/s42003-023-04800-7

Effect of a loss of the mda5/ifih1 gene on the antiviral resistance in a Chinook salmon Oncorhynchus tshawytscha cell line

Autorzy: Catherine Collins, Lise Chaumont, Mathilde Peruzzi, Nedim Jamak, Pierre Boudinot, Julia Béjar, Patricia Moreno, Daniel Álvarez Torres, Bertrand Collet
Opublikowane w: PLOS ONE, Numer 19, 2024, Strona(/y) e0311283, ISSN 1932-6203
Wydawca: Public Library of Science
DOI: 10.1371/journal.pone.0311283

Effects of dietary co-exposure to fungal and herbal functional feed additives on immune parameters and microbial intestinal diversity in rainbow trout (Oncorhynchus mykiss)

Autorzy: Julia Mougin, Victor P. Lobanov, M. Danion, R. Roquigny, L. Goardon, T. Grard, T. Morin, L. Labbe, Alyssa Joyce
Opublikowane w: Fish & Shellfish Immunology, Numer Volume 137, June 2023, 108773, 2023, ISSN 1050-4648
Wydawca: Academic Press
DOI: 10.1016/j.fsi.2023.108773

Optimization of in vitro culture conditions of common carp germ cells for purpose of surrogate production

Autorzy: Xuan Xie; Roman Franěk; Martin Pšenička; Fan Chen; Vojtech Kašpar
Opublikowane w: Frontiers in Veterinary Science, Numer 9-2022, 2022, ISSN 2297-1769
Wydawca: Front.Vet.Sci.
DOI: 10.3389/fvets.2022.1036495

Effects of a plant-based diet from first feeding on the intestinal expression of nutrient sensors in rainbow trout (Oncorhynchus mykiss)

Autorzy: Cristina Fernández-Maestú, Jessica Calo, Maud Martinat, José L. Soengas, Jerome Roy, Ayelén M. Blanco
Opublikowane w: Aquaculture, Numer 599, 2025, Strona(/y) 742093, ISSN 0044-8486
Wydawca: Elsevier BV
DOI: 10.1016/j.aquaculture.2024.742093

Genome-wide comparative methylation analysis reveals the fate of germ stem cells after surrogate production in teleost

Autorzy: Rigolin Nayak, Roman Franěk, Audrey Laurent, Martin Pšenička
Opublikowane w: BMC Biology, Numer 22, 2024, ISSN 1741-7007
Wydawca: BioMed Central
DOI: 10.1186/s12915-024-01842-z

Xenotransplantation of European Eel (Anguilla anguilla) Spermatogonia in Zebrafish (Danio rerio) and European Sea Bass (Dicentrarchus labrax)

Autorzy: Marta Blanes-García, Zoran Marinović, Marina Morini, Alain Vergnet, Ákos Horváth, Juan F. Asturiano
Opublikowane w: Fishes, Numer 9, 2025, Strona(/y) 290, ISSN 2410-3888
Wydawca: MDPI AG
DOI: 10.3390/fishes9070290

Nanopore‐Enabled Microbiome Analysis: Investigating Environmental and Host‐Associated Samples in Rainbow Trout Aquaculture

Autorzy: Giulia Zarantonello, Argelia Cuenca
Opublikowane w: Current Protocols, Numer 4, 2024, ISSN 2691-1299
Wydawca: Wiley
DOI: 10.1002/cpz1.1069

Technological approaches to grow-out: a comparative study of pikeperch (Sander lucioperca) culture in three different production systems during the growing season

Autorzy: Václav Kučera, Tomáš Pěnka, Oleksandr Malinovskyi, Jitka Kolářová, Ján Regenda, Tomáš Policar
Opublikowane w: Frontiers in Marine Science, Numer 12, 2025, ISSN 2296-7745
Wydawca: Frontiers Media SA
DOI: 10.3389/fmars.2025.1578274

Quantifying dominant bacterial genera detected in metagenomic data from fish eggs and larvae using genus-specific primers

Autorzy: Babak Najafpour, Patricia I.S. Pinto, A.V.M. Canario, Deborah M. Power
Opublikowane w: Microbiology Open, Numer 11, 2022, Strona(/y) e1274, ISSN 2045-8827
Wydawca: John Wiley and Sons Inc.
DOI: 10.1002/mbo3.1274

Behavioural Monitoring Underlines Habituation to Repeated Stressor Stimuli in Farmed Gilthead Sea Bream (Sparus aurata) Reared at a High Stocking Density

Autorzy: Paul G. Holhorea, Fernando Naya-Català, Ricardo Domingo-Bretón, Federico Moroni, Álvaro Belenguer, Josep À. Calduch-Giner, Jaume Pérez-Sánchez
Opublikowane w: Biology, Numer 13, 2024, Strona(/y) 879, ISSN 2079-7737
Wydawca: MDPI
DOI: 10.3390/biology13110879

Early-life environmental enrichment promotes positive animal welfare for juvenile Atlantic salmon (Salmo salar) in aquaculture research

Autorzy: Pamela M. Prentice, Mauro Chivite Alcalde, Petr Císař, Sonia Rey Planellas
Opublikowane w: Scientific Reports, Numer 15, 2025, ISSN 2045-2322
Wydawca: Nature Publishing Group
DOI: 10.1038/s41598-025-88780-0

Fulvic acid modulates mucosal immunity in fish skin: Sustainable aquaculture solution or environmental risk factor?

Autorzy: Thora Lieke, Vlastimil Stejskal, Sascha Behrens, Christian E.W. Steinberg, Thomas Meinelt
Opublikowane w: Journal of Hazardous Materials, Numer 467, 2024, Strona(/y) 133737, ISSN 0304-3894
Wydawca: Elsevier BV
DOI: 10.1016/j.jhazmat.2024.133737

Effects of Hydrostatic Pressure Treatment of Newly Fertilized Eggs on the Ploidy Level and Karyotype of Pikeperch Sander lucioperca (Linnaeus, 1758)

Autorzy: Jenő Káldy; Eszter Patakiné Várkonyi; Georgina Fazekas; Zoltán Nagy; Zsuzsanna Jakabné Sándor; Katalin Bogár; Gyula Kovács; Mariann Molnár; Bence Lázár; Katalin Goda; Zsuzsanna Gyöngy; Zsuzsanna Ritter; Péter Nánási; Ákos Horváth; Uroš Ljubobratović
Opublikowane w: Life; Volume 11; Numer 12; Pages: 1296, Numer 1, 2021, ISSN 2075-1729
Wydawca: MDPI
DOI: 10.3390/life11121296

Effects of black soldier fly larvae oil on lipid metabolism, liver fatty acid composition, and plasma metabolite profiles in gilthead seabream juveniles

Autorzy: Sara Moutinho, Óscar Monroig, Helena Peres, Andrea Villena-Rodríguez, Rui Magalhães, Lina Pulido-Rodríguez, Giuliana Parisi, Aires Oliva-Teles
Opublikowane w: Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology, Numer 277, 2025, Strona(/y) 111069, ISSN 1096-4959
Wydawca: Elsevier BV
DOI: 10.1016/j.cbpb.2024.111069

Precision formulation, a new concept to improve dietary amino acid absorption based on the study of cationic amino acid transporters

Autorzy: Guillaume Morin, Karine Pinel, Cécile Heraud, Soizig Le-Garrec, Chloé Wayman, Karine Dias, Frédéric Terrier, Anthony Lanuque, Stéphanie Fontagné-Dicharry, Iban Seiliez, Florian Beaumatin
Opublikowane w: iScience, Numer 27, 2025, Strona(/y) 108894, ISSN 2589-0042
Wydawca: Elsevier BV
DOI: 10.1016/j.isci.2024.108894

Evaluation of Post-Larval Diets for Indoor Weaned Largemouth Bass (Micropterus salmoides)

Autorzy: Jovanka Lukić, Gergő Gyalog, Zoltán Horváth, Anita Annamária Szűcs, Tijana Ristović, Amarela Terzić-Vidojević, Zsuzsanna J. Sándor, Uroš Ljubobratović
Opublikowane w: Animals, Numer 13, 2023, Strona(/y) 3179, ISSN 2076-2615
Wydawca: MDPI AG
DOI: 10.3390/ani13203179

Differential Reshaping of Skin and Intestinal Microbiota by Stocking Density and Oxygen Availability in Farmed Gilthead Sea Bream (Sparus aurata): A Behavioral and Network-Based Integrative Approach

Autorzy: Toxqui-Rodríguez S, Holhorea PG, Naya-Català F, Calduch-Giner JÀ, Sitjà-Bobadilla A, Piazzon C, Pérez-Sánchez J
Opublikowane w: Microorganisms, Numer 12, 2024, Strona(/y) 1360, ISSN 2076-2607
Wydawca: MDPI
DOI: 10.3390/microorganisms12071360

Intestinal microbiota shifts by dietary intervention during extreme heat summer episodes in farmed gilthead sea bream (Sparus aurata)

Autorzy: R. Domingo-Bretón, S. Cools, F. Moroni, A. Belenguer, J.A. Calduch-Giner, E. Croes, P.G. Holhorea, F. Naya-Català, H. Boon, J. Pérez-Sánchez
Opublikowane w: Aquaculture Reports, Numer 40, 2025, Strona(/y) 102566, ISSN 2352-5134
Wydawca: Elsevier BV
DOI: 10.1016/j.aqrep.2024.102566

Revising the Impact and Prospects of Activity and Ventilation Rate Bio-Loggers for Tracking Welfare and Fish-Environment Interactions in Salmonids and Mediterranean Farmed Fish

Autorzy: Calduch-Giner J, Holhorea PG, Ferrer MÁ, Naya-Català F, Rosell-Moll E, Vega García C, Prunet P, Espmark ÅM, Leguen I, Kolarevic J, Vega A, Kerneis T, Goardon L, Afonso JM, Pérez-Sánchez J.
Opublikowane w: Frontiers in Marine Science, Numer 9, 2022, Strona(/y) 854888, ISSN 2296-7745
Wydawca: Frontiers Media
DOI: 10.3389/fmars.2022.854888

Are the Main Methionine Sources Equivalent? A Focus on DL-Methionine and DL-Methionine Hydroxy Analog Reveals Differences on Rainbow Trout Hepatic Cell Lines Functions

Autorzy: Karine Pinel, Cécile Heraud, Guillaume Morin, Karine Dias, Annaëlle Marcé, Linda Beauclair, Stéphanie Fontagné-Dicharry, Karthik   Masagounder, Martina Klünemann, Iban Seiliez and Florian Beaumatin
Opublikowane w: International Journal of Molecular Sciences, Numer Semimonthly, 2022, ISSN 1422-0067
Wydawca: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms23062935