Optimal Cellular Prediction

Project Information

OCP

Grant agreement ID: 885065

DOI

10.3030/885065

EC signature date 11 May 2020

Start date 1 April 2021

End date 30 September 2026

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost

€ 2 496 750,00

EU contribution

€ 2 496 750,00

Coordinated by

STICHTING NEDERLANDSE WETENSCHAPPELIJK ONDERZOEK INSTITUTEN
Netherlands

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Deliverables

Open Research Data Pilot (1)

Data management plan

Publications

Peer reviewed articles (8)

Information Processing in Biochemical Networks

Author(s): Gašper Tkačik, Pieter Rein ten Wolde
Published in: Annual Review of Biophysics, Issue 54, 2025, Page(s) 249-274, ISSN 1936-122X
Publisher: Annual Reviews, Inc.
DOI: 10.1146/annurev-biophys-060524-102720

Predicting concentration changes via discrete receptor sampling

Author(s): Age J. Tjalma, Pieter Rein ten Wolde
Published in: Physical Review Research, Issue 6, 2024, ISSN 2643-1564
Publisher: American Physical Society (APS)
DOI: 10.1103/physrevresearch.6.033049

Bit reset protocols that obey activity-constrained speed limits do not minimize work for a given speed

Author(s): Daan Mulder, Thomas E. Ouldridge, Pieter Rein ten Wolde
Published in: Physical Review E, Issue 111, 2025, ISSN 2470-0045
Publisher: American Physical Society (APS)
DOI: 10.1103/physreve.111.044141

Exploiting bias in optimal finite-time copying protocols

Author(s): Daan Mulder, Pieter Rein ten Wolde, Thomas E. Ouldridge
Published in: Physical Review Research, Issue 7, 2025, ISSN 2643-1564
Publisher: American Physical Society (APS)
DOI: 10.1103/physrevresearch.7.l012026

Quantifying the nuclear localization of fluorescently tagged proteins

Author(s): Julien Hurbain, Pieter Rein ten Wolde, Peter S Swain
Published in: Bioinformatics Advances, Issue 5, 2025, ISSN 2635-0041
Publisher: Oxford University Press (OUP)
DOI: 10.1093/bioadv/vbaf114

Trade-offs between cost and information in cellular prediction

Author(s): Age J. Tjalma; Vahe Galstyan; Jeroen Goedhart; Lotte Slim; Nils B. Becker; Pieter Rein ten Wolde
Published in: Proceedings of the National Academy of Sciences, Issue 120, 2023, Page(s) e2303078120, ISSN 0027-8424
Publisher: National Academy of Sciences
DOI: 10.1073/pnas.2303078120

Path Weight Sampling: Exact Monte Carlo Computation of the Mutual Information between Stochastic Trajectories

Author(s): Manuel Reinhardt; Gašper Tkačik; Pieter Rein ten Wolde
Published in: Physical Review X, Issue 13, 2023, Page(s) 041017, ISSN 2160-3308
Publisher: American Physical Society
DOI: 10.1103/physrevx.13.041017

Exact Computation of Transfer Entropy with Path Weight Sampling

Author(s): Avishek Das, Pieter Rein ten Wolde
Published in: Physical Review Letters, Issue 135, 2025, ISSN 0031-9007
Publisher: American Physical Society
DOI: 10.1103/t8z9-ylvg

Non-peer reviewed articles (1)

Quantifying the genetic origins of body plan scaling

Author(s): Vahe Galstyan, Pieter Rein ten Wolde
Published in: Proceedings of the National Academy of Sciences, Issue 122, 2024, ISSN 0027-8424
Publisher: National Academy of Sciences
DOI: 10.1073/pnas.2422340121