Integrative mechanistic and multi-omics Modelling of Antigen Presentation to predict epitope dynamics

Project Information

IMAP

Grant agreement ID: 945528

DOI

10.3030/945528

EC signature date 13 October 2020

Start date 1 April 2021

End date 31 March 2026

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost

€ 1 495 000,00

EU contribution

€ 1 495 000,00

Coordinated by

MAX-PLANCK-GESELLSCHAFT ZUR FORDERUNG DER WISSENSCHAFTEN EV
Germany

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Publications

Peer reviewed articles (7)

iBench: A ground truth approach for advanced validation of mass spectrometry identification method

Author(s): John A. Cormican, Wai Tuck Soh, Michele Mishto, Juliane Liepe
Published in: Proteomics, Issue 16159853, 2022, ISSN 1615-9853
Publisher: John Wiley & Sons Ltd.
DOI: 10.1002/pmic.202200271

Database search engines and target database features impinge upon the identification of post-translationally cis-spliced peptides in HLA class I immunopeptidomes

Author(s): Michele Mishto, Yehor Horokhovskyi, John A. Cormican, Xiaoping Yang, Steven Lynham, Henning Urlaub, Juliane Liepe
Published in: Proteomics, Issue 16159853, 2022, Page(s) 2100226, ISSN 1615-9853
Publisher: John Wiley & Sons Ltd.
DOI: 10.1002/pmic.202100226

Predicting the success of Fmoc-based peptide synthesis.

Author(s): Ilanit Gutman; Ron Gutman; John Sidney; Leila Chihab; Michele Mishto; Juliane Liepe; Anthony Chiem; Jason Greenbaum; Zhen Yan; Alessandro Sette; Zeynep Koşaloğlu-Yalçın; Bjoern Peters
Published in: ACS Omega, Issue 24701343, 2022, ISSN 2470-1343
Publisher: American Chemical Society
DOI: 10.25418/crick.20376597.v1

Response: Commentary: An In Silico–In Vitro Pipeline Identifying an HLA-A*02:01+ KRAS G12V+ Spliced Epitope Candidate for a Broad Tumor-Immune Response in Cancer Patients

Author(s): Michele Mishto, Guillermo Rodriguez-Hernandez, Jacques Neefjes, Henning Urlaub, Juliane Liepe4*
Published in: Frontiers in Immunology, Issue 12, 2021, ISSN 1664-3224
Publisher: Lausanne: Frontiers Media S.A., 2010-
DOI: 10.3389/fimmu.2021.679836

Potential Mimicry of Viral and Pancreatic β Cell Antigens Through Non-Spliced and cis-Spliced Zwitter Epitope Candidates in Type 1 Diabetes

Author(s): Michele Mishto, Artem Mansurkhodzhaev, Teresa Rodriguez-Calvo, Juliane Liepe
Published in: Front. Immunol., Issue 16643224, 2021, ISSN 1664-3224
Publisher: Lausanne: Frontiers Media S.A., 2010-
DOI: 10.3389/fimmu.2021.656451

InvitroSPI and a large database of proteasome-generated spliced and non-spliced peptides

Author(s): Hanna P. Roetschke; Guillermo Rodriguez-Hernandez; John A. Cormican; Xiaoping Yang; Steven Lynham; Michele Mishto; Juliane Liepe
Published in: Scientific Data, Issue 1, 2023, ISSN 2052-4463
Publisher: Nature Publishing Group, 2014-
DOI: 10.1038/s41597-022-01890-6

inSPIRE: An open-source tool for increased mass spectrometry identification rates using Prosit spectral prediction

Author(s): John A. Cormican, Yehor Horokhovskyi, Wai Tuck Soh, Michele Mishto, Juliane Liepe
Published in: Molecular & Cellular Proteomics, Issue 15359476, 2022, ISSN 1535-9476
Publisher: American Society for Biochemistry and Molecular Biology Inc.
DOI: 10.1016/j.mcpro.2022.100432