Opis projektu Intelligent Information ManagementBiobankCloud - your PaaS for BiobankingThe storage infrastructure for human biological material is generally known as a biobank. One of the main tenets of biobanking is the digitization of our genomic information for its archival and analysis. That is, in the future, vast amounts of genomic data will be derived from biomaterials stored in biobanks. The scale of the storage requirements for genomic data is huge - a single human genome amounts to coping with the analysis of three billion base pairs. In addition to the storage of genomic data, its analysis will require both massive parallel computing infrastructure and data-intensive computing tools and services to perform analyses in reasonable time. As of 2013, a huge wave of big data is approaching, driven by the decreasing cost of sequencing genomic data, which has been halving every 4 months since 2004. Biobanks store and catalogue human biological material, but they are not prepared to handle this wave of data - there is a biobank bottleneck. Pokaż cel projektu Ukryj cel projektu Big data is coming to Biobanks, driven by the decreasing cost of sequencing genomic data, which has been halving every 4 months since 2004. Biobanks, used to store and catalogue human biological material, are not prepared to handle this wave of data - there is a Biobank bottleneck: a lack of platform support for the storage and analysis of the coming wave of human genomic data. In this project, we will develop a cloud-computing platform as a service (PaaS) for Biobanking. The platform will provide security, storage, data-intensive tools and algorithms, and support for allowing Biobanks to share data with one another, all within the existing regulatory frameworks for Biobanking. Our research challenges include: the definition of the regulatory framework and data model for Biobank data sharing; the development of a scalable, highly available storage infrastructure; data-intensive tools and workflows for aligning, clustering, aggregating, compressing and anonymizing sequence data; a security platform that ensures data confidentiality, data integrity, and data access auditing; the inter-connection of Biobanks, while also leveraging the storage and processing capacity of public clouds; and the integration of these components as a PaaS.The project will require focused inter-disciplinary research. We have assembled a consortium containing complementary competencies, from developers and users of Biobanks to systems researchers with deep expertise in building dependable and scalable software platforms. Our platform will be evaluated and disseminated at existing Biobanks in Sweden and Germany. Our project goal is to have BiobankCloud remove the Biobank bottleneck, enabling global leadership for European Biobanks, with improved support for preventing diseases, spotting trends, and advancing our understanding of clinical and molecular pathology. Dziedzina nauki natural sciencesbiological sciencesgeneticsnatural sciencescomputer and information sciencessoftwarenatural sciencescomputer and information sciencesdata sciencebig datamedical and health sciencesbasic medicinepathology Program(-y) FP7-ICT - Specific Programme "Cooperation": Information and communication technologies Temat(-y) ICT-2011.4.4 - Intelligent Information Management Zaproszenie do składania wniosków FP7-ICT-2011-8 Zobacz inne projekty w ramach tego zaproszenia System finansowania CP - Collaborative project (generic) Kontakt do koordynatora Jim DOWLING Dr. Koordynator KUNGLIGA TEKNISKA HOEGSKOLAN Wkład UE € 540 008,00 Adres BRINELLVAGEN 8 100 44 Stockholm Szwecja Zobacz na mapie Region Östra Sverige Stockholm Stockholms län Rodzaj działalności Higher or Secondary Education Establishments Kontakt administracyjny Rita Fjällendahl (Mrs.) Linki Kontakt z organizacją Opens in new window Strona internetowa Opens in new window Koszt całkowity Brak danych Uczestnicy (5) Sortuj alfabetycznie Sortuj według wkładu UE Rozwiń wszystko Zwiń wszystko HUMBOLDT-UNIVERSITAET ZU BERLIN Niemcy Wkład UE € 405 561,00 Adres UNTER DEN LINDEN 6 10117 Berlin Zobacz na mapie Region Berlin Berlin Berlin Rodzaj działalności Higher or Secondary Education Establishments Kontakt administracyjny Renate Ubachs (Ms.) Linki Kontakt z organizacją Opens in new window Strona internetowa Opens in new window Koszt całkowity Brak danych CHARITE - UNIVERSITAETSMEDIZIN BERLIN Niemcy Wkład UE € 375 851,00 Adres Chariteplatz 1 10117 Berlin Zobacz na mapie Region Berlin Berlin Berlin Rodzaj działalności Higher or Secondary Education Establishments Kontakt administracyjny Eveline Fräßdorf (Ms.) Linki Kontakt z organizacją Opens in new window Strona internetowa Opens in new window Koszt całkowity Brak danych FUNDACAO DA FACULDADE DE CIENCIAS DA UNIVERSIDADE DE LISBOA FP Portugalia Wkład UE € 249 507,00 Adres CAMPO GRANDE EDIFICIO C1 PISO 3 1749 016 Lisboa Zobacz na mapie Region Continente Área Metropolitana de Lisboa Área Metropolitana de Lisboa Rodzaj działalności Research Organisations Kontakt administracyjny Lívia Moreira (Mrs.) Linki Kontakt z organizacją Opens in new window Strona internetowa Opens in new window Koszt całkowity Brak danych KAROLINSKA INSTITUTET Szwecja Wkład UE € 387 438,00 Adres Nobels Vag 5 17177 Stockholm Zobacz na mapie Region Östra Sverige Stockholm Stockholms län Rodzaj działalności Higher or Secondary Education Establishments Kontakt administracyjny Agneta Häggström (Ms.) Linki Kontakt z organizacją Opens in new window Strona internetowa Opens in new window Koszt całkowity Brak danych FACULDADE DE CIENCIAS DA UNIVERSIDADE DE LISBOA Portugalia Wkład UE € 121 635,00 Adres CAMPO GRANDE C5 PISO 3 1749-016 Lisboa Zobacz na mapie Region Continente Área Metropolitana de Lisboa Área Metropolitana de Lisboa Rodzaj działalności Higher or Secondary Education Establishments Kontakt administracyjny Silvia Gomes (Dr.) Linki Kontakt z organizacją Opens in new window Strona internetowa Opens in new window Koszt całkowity Brak danych