Brain connectivity metrology for personalised neuroimaging in health and disease

Project Information

Neuro-Metrology

Grant agreement ID: 101000969

DOI

10.3030/101000969

EC signature date 25 June 2021

Start date 1 October 2021

End date 30 September 2026

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost

€ 1 995 269,00

EU contribution

€ 1 995 269,00

Coordinated by

THE UNIVERSITY OF NOTTINGHAM
United Kingdom

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Publications

Peer reviewed articles (18)

Concurrent mapping of brain ontogeny and phylogeny within a common space: Standardized tractography and applications

Author(s): Shaun Warrington; Thompson Elinor; Bastiani Matteo; Dubois Jessica; Baxter Luke; Slater Rebeccah; Jbabdi Saad; Mars Rogier B; Sotiropoulos Stamatios N
Published in: Science Advances, Issue 8, 2022, ISSN 2375-2548
Publisher: AAAS
DOI: 10.1126/sciadv.abq2022

The spatial extent of anatomical connections within the thalamus varies across the cortical hierarchy in humans and macaques

Author(s): Amber Howell; Shaun Warrington; Clara Fonteneau' Youngsun Cho; Stamatios N. Sotiropoulos; John Murray; Alan Anticevic
Published in: eLife, 2024, ISSN 2050-084X
Publisher: eLife Sciences Publications
DOI: 10.7554/elife.95018.1

Objective QC for diffusion MRI data: Artefact detection using normative modelling

Author(s): Ramona Cirstian; Natalie J. Forde; Jesper L. R. Andersson; Stamatios N. Sotiropoulos; Christian F. Beckmann; Andre F. Marquand
Published in: Imaging Neuroscience, Issue 2, 2024, ISSN 2837-6056
Publisher: MIT Press
DOI: 10.1162/imag_a_00144

The Human Connectome Project: A retrospective

Author(s): Jennifer Stine Elam, Matthew F. Glasser, Michael P. Harms, Stamatios N. Sotiropoulos, Jesper L.R. Andersson, Gregory C. Burgess, Sandra W. Curtiss, Robert Oostenveld, Linda J. Larson-Prior, Jan-Mathijs Schoffelen, Michael R. Hodge, Eileen A. Cler, Daniel M. Marcus, Deanna M. Barch, Essa Yacoub, Stephen M. Smith, Kamil Ugurbil, David C. Van Essen
Published in: Neuroimage, Issue 244, 2021, ISSN 1095-9572
Publisher: Elsevier
DOI: 10.1016/j.neuroimage.2021.118543

Denoising Diffusion MRI: Considerations and implications for analysis

Author(s): J.P. Manzano-Patron; Steen Moeller; Jesper L.R. Andersson; Kamil Ugurbil; Essa Yacoub; Stamatios N Sotiropoulos
Published in: Imaging Neuroscience, Issue 2, 2024, ISSN 2837-6056
Publisher: MIT Press
DOI: 10.1162/imag_a_00060

Mapping brain endophenotypes associated with idiopathic pulmonary fibrosis genetic risk

Author(s): Ali-Reza Mohammadi-Nejad; Richard J. Allen; Luke M. Kraven; Olivia C. Leavy; R Gisli Jenkins; Louise V. Wain; Dorothee P Auer; Stamatios N. Sotiropoulos
Published in: eBiomedicine, Issue 86, 2022, ISSN 2352-3964
Publisher: Elsevier BV
DOI: 10.1016/j.ebiom.2022.104356

Uncertainty mapping and probabilistic tractography using Simulation-based Inference in diffusion MRI: A comparison with classical Bayes

Author(s): J.P. Manzano-Patrón, Michael Deistler, Cornelius Schröder, Theodore Kypraios, Pedro J. Gonçalves, Jakob H. Macke, Stamatios N. Sotiropoulos
Published in: Medical Image Analysis, Issue 103, 2025, Page(s) 103580, ISSN 1361-8415
Publisher: Elsevier BV
DOI: 10.1016/j.media.2025.103580

Whole brain functional connectivity: Insights from next generation neural mass modelling incorporating electrical synapses

Author(s): Michael Forrester, Sammy Petros, Oliver Cattell, Yi Ming Lai, Reuben D. O’Dea, Stamatios Sotiropoulos, Stephen Coombes
Published in: PLOS Computational Biology, Issue 20, 2024, Page(s) e1012647, ISSN 1553-7358
Publisher: Public Library of Science (PLoS)
DOI: 10.1371/journal.pcbi.1012647

On stability of canonical correlation analysis and partial least squares with application to brain-behavior associations

Author(s): Markus Helmer; Shaun Warrington; Ali-Reza Mohammadi-Nejad; Jie Lisa Ji; Amber Howell; Benjamin Rosand; Alan Anticevic; Stamatios N Sotiropoulos; John D Murray
Published in: Communications Biology, Issue 7, 2024, ISSN 2399-3642
Publisher: Springer Nature
DOI: 10.1101/2020.08.25.265546

Connectivity Profile and Function of Uniquely Human Cortical Areas

Author(s): Katherine L. Bryant, Julia Camilleri, Shaun Warrington, Guilherme Blazquez Freches, Stamatios N. Sotiropoulos, Saad Jbabdi, Simon Eickhoff, Rogier B. Mars
Published in: The Journal of Neuroscience, Issue 45, 2025, Page(s) e2017242025, ISSN 0270-6474
Publisher: Society for Neuroscience
DOI: 10.1523/jneurosci.2017-24.2025

A resource for development and comparison of multi-modal brain 3T MRI harmonisation approaches

Author(s): Shaun Warrington; Asante Ntata; Olivier Mougin; Jon Campbell; Andrea Torchi; Martin Craig; Fidel Alfaro-Almagro; Karla L. Miller; Paul S. Morganl Mark Jenkinson; Stamatios N. Sotiropoulos
Published in: Imaging Neuroscience, Issue 1, 2023, ISSN 2837-6056
Publisher: MIT Press
DOI: 10.1162/imag_a_00042

QuNex – An Integrative Platform for Reproducible Neuroimaging Analytics

Author(s): Jie Lisa Ji, Jure Demsar, Clara Fonteneau, Zailyn Tamayo, Lining Pan, Aleksij Kraljic, Andraz Matkovic, Nina Purg, Markus Helmer, Shaun Warrington, Anderson Winkler, Valerio Zerbi, Timothy S. Coalson, Matthew F. Glasser, Michael P. Harms, Stamatios N. Sotiropoulos, John D. Murray, Alan Anticevic, Grega Repovs
Published in: Frontiers in Neuroinformatics, Issue 17, 2023, ISSN 1662-5196
Publisher: Frontiers Research Foundation
DOI: 10.3389/fninf.2023.1104508

Cross-species neuroanatomy in primates using tractography

Author(s): Stamatios N. Sotiropoulos, Michel Thiebaut de Schotten, Suzanne N. Haber, Stephanie J. Forkel
Published in: Brain Structure and Function, Issue 230, 2025, ISSN 1863-2661
Publisher: Springer Science and Business Media LLC
DOI: 10.1007/s00429-025-02914-8

Non-reversibility outperforms functional connectivity in characterisation of brain states in MEG data

Author(s): Prejaas Tewarie; Rikkert Hindriks; Yi Ming Lai; Stamatios N. Sotiropoulos; Morten Kringelbach; Gustavo Deco
Published in: Neuroimage, Issue 276, 2023, ISSN 1095-9572
Publisher: Elsevier
DOI: 10.1016/j.neuroimage.2023.120186

Generalising XTRACT Tractography Protocols Across Common Macaque Brain Templates

Author(s): Stephania Assimopoulos; Shaun Warrington; Katherine L Bryant; Stefan Pszczolkowski; Saad Jbabdi; Rogier B Mars; Stamatios N Sotiropoulos
Published in: Brain Structure and Function, 2024, ISSN 1863-2661
Publisher: Springer
DOI: 10.1007/s00429-024-02760-0

Predicting time-resolved electrophysiological brain networks from structural eigenmodes

Author(s): Prejaas Tewarie; Bastian Prasse; Jil Meier; Kanad Mandke; Shaun Warrington; Cornelis J. Stam; Matthew J. Brookes; Piet Van Mieghem; Stamatios N. Sotiropoulos; Arjan Hillebrand
Published in: Human Brain Mapping, Issue 43, 2022, Page(s) 4475-4491, ISSN 1065-9471
Publisher: John Wiley & Sons Inc.
DOI: 10.1002/hbm.25967

Right fronto-parietal networks mediate the neurocognitive benefits of enriched environments

Author(s): Meadhbh B. Brosnan; Nir Shalev; Jivesh Ramduny; Stamatios N. Sotiropoulos; Magdalena Chechlacz
Published in: Brain Communications, Issue 4, 2022, ISSN 2632-1297
Publisher: Oxford University Press
DOI: 10.1093/braincomms/fcac080

A multi-site, multi-modal travelling-heads resource for brain MRI harmonisation

Author(s): Shaun Warrington, Andrea Torchi, Olivier Mougin, Jon Campbell, Asante Ntata, Martin Craig, Stephania Assimopoulos, Fidel Alfaro-Almagro, Karla L. Miller, Mark Jenkinson, Paul S. Morgan, Stamatios N. Sotiropoulos
Published in: Scientific Data, Issue 12, 2025, ISSN 2052-4463
Publisher: Springer Science and Business Media LLC
DOI: 10.1038/s41597-025-04822-2

Conference proceedings (12)

Generative models of whole-brain, surface-based imaging features using artificial neural networks

Author(s): Mohammed Amer; J.P. Manzano-Patron; Shaun Warrington; Xin Chen; Stamatios Sotiropoulos
Published in: Proceedings of the OHBM Annual Meeting, 2023, Page(s) 2022
Publisher: Organization for Human Brain Mapping
DOI: 10.5281/zenodo.10719063

ON-HARMONY 2.0: A comprehensive travelling-heads resource for multi-modal neuroimaging harmonisation

Author(s): Andrea Torchi; Shaun Warrington, Shaun; Olivier Mougin; Jon Campbell; Martin Craig; Asante Ntata; Fidel Alfaro-Almagro; Karla Miller; Mark Jenkinson; Paul Morgan; Stamatios Sotiropoulos
Published in: Proceedings of the BIC-ISMRM Annual Meeting, 2024, Page(s) P06
Publisher: ISMRM
DOI: 10.5281/zenodo.13884520

EDDEN: Towards a framework for Evaluating Diffusion MRI DENoising approaches

Author(s): J.P. Manzano Patron; Steen Moeller; Essa Yacoub; Stamatios Sotiropoulos
Published in: Proceedings of the ISMRM Annual Meeting, 2022, Page(s) 0165
Publisher: International Society for Magnetic Resonance in Medicine
DOI: 10.58530/2022/0165

The effect of structural connectome estimation in modelling whole-brain functional dynamics

Author(s): Yi Ming Lai; Michael Forrester; Stephen Coombes; Stamatios N Sotiropoulos
Published in: Proceedings of the OHBM Annual Meeting, 2022
Publisher: Organization for Human Brain Mapping
DOI: 10.5281/zenodo.10718915

Tractography protocols for the neonatal brain, standardised against the adult human and macaque

Author(s): Shaun Warrington; Elinor Thompson; Jessica Dubois; Luke Baxter; Rebeccah Slater; Rogier B Mars4; Saad Jbabdi; Matteo Bastiani; Stamatios N Sotiropoulos
Published in: Proceedings of the ISMRM Annual Meeting, 2022, Page(s) 0519
Publisher: ISMRM Proceedings of the
DOI: 10.58530/2022/0519

Simulation-based inference in diffusion MRI: From uncertainty mapping to probabilistic tractography

Author(s): J.P. Manzano-Patron; Michael Deistler; Cornelius Schroeder; Theodore Kypraios; Pedro Goncalves; Jakob Macke; Stamatios Sotiropoulos
Published in: Proceedings of the BIC-ISMRM Annual Meeting, 2024, Page(s) P47
Publisher: ISMRM
DOI: 10.5281/zenodo.13885239

Cross-species Standardised Subcortical Tractography

Author(s): Stephania Assimopoulos; Shaun Warrington; Davide Folloni; Katherine Bryant; Sarah Heilbronner; Saad Jbabdi; Rogier Mars; Stamatios Sotiropoulos
Published in: Proceedings of the BIC-ISMRM Annual Meeting, 2024, Page(s) T12
Publisher: ISMRM
DOI: 10.5281/zenodo.13885811

Understanding brain diversity across ontogeny and phylogeny within a single common space

Author(s): Shaun Warrington; E. Thompson; M. Bastiani; J. Dubois; L. Baxter; R. Slater; S. Jbabdi;, R. B. Mars; Stamatios N. Sotiropoulos
Published in: Proceedings of the OHBM Annual Meeting, 2022
Publisher: Organization for Human Brain Mapping
DOI: 10.5281/zenodo.10719392

Amortised simulation-based inference in diffusion MRI using artificial neural networks

Author(s): J.P. Manzano-Patron; Theodore Kypraios; Stamatios N. Sotiropoulos
Published in: Proceedings of the OHBM Annual Meeting, 2023, Page(s) 173
Publisher: Organization for Human Brain Mapping
DOI: 10.5281/zenodo.10719146

Amortised inference in diffusion MRI biophysical models using artificial neural networks and simulation-based frameworks

Author(s): J.P. Manzano Patron; Theodore Kypraios; Stamatios N Sotiropoulos
Published in: Proceedings of the ISMRM Annual Meeting, 2022, Page(s) 1644
Publisher: International Society for Magnetic Resonance in Medicine
DOI: 10.58530/2022/1644

A testbed for harmonisation of multimodal neuroimaging data

Author(s): Shaun Warrington; Asante Ntata; Olivier Mougin; Jon Campbell; Paul Morgan; Mark Jenkinson; Stamatios Sotiropoulos
Published in: Proceedings of the OHBM Annual Meeting, 2023
Publisher: Organization for Human Bran Mapping
DOI: 10.5281/zenodo.10719184

Generalising XTRACT Tractography Protocols Across Common Macaque Brain Templates

Author(s): Stephania Assimopoulos; Shaun Warrington; Stefan Pszczolkowski; Katherine L. Bryant; Rogier Mars; Stamatios Sotiropoulos
Published in: Proceedings of the OHBM Annual Meeting, 2023
Publisher: Organization for Human Brain Mapping
DOI: 10.5281/zenodo.10723618

Other (1)

Personalized circuit modeling captures variation in cortical functional connectivity

Author(s): Rachel A. Cooper; Murat Demirtas; Joshua B. Burt; Amber M. Howell; J. Lisa Ji; Grega Repovs; Stamatios N. Sotiropoulos; Alan Anticevic; John D. Murray
Published in: Biorxiv Preprint, 2024
Publisher: biorxiv
DOI: 10.1101/2024.02.19.581085