Brain connectivity metrology for personalised neuroimaging in health and disease

Informazioni relative al progetto

Neuro-Metrology

ID dell’accordo di sovvenzione: 101000969

DOI

10.3030/101000969

Data della firma CE 25 Giugno 2021

Data di avvio 1 Ottobre 2021

Data di completamento 30 Settembre 2026

Finanziato da

• EXCELLENT SCIENCE - European Research Council (ERC)

Costo totale

€ 1 995 269,00

Contributo UE

€ 1 995 269,00

Coordinato da

THE UNIVERSITY OF NOTTINGHAM
United Kingdom

CORDIS fornisce collegamenti ai risultati finali pubblici e alle pubblicazioni dei progetti ORIZZONTE.

I link ai risultati e alle pubblicazioni dei progetti del 7° PQ, così come i link ad alcuni tipi di risultati specifici come dataset e software, sono recuperati dinamicamente da .OpenAIRE .

Pubblicazioni

Peer reviewed articles (18)

Concurrent mapping of brain ontogeny and phylogeny within a common space: Standardized tractography and applications

Autori: Shaun Warrington; Thompson Elinor; Bastiani Matteo; Dubois Jessica; Baxter Luke; Slater Rebeccah; Jbabdi Saad; Mars Rogier B; Sotiropoulos Stamatios N
Pubblicato in: Science Advances, Numero 8, 2022, ISSN 2375-2548
Editore: AAAS
DOI: 10.1126/sciadv.abq2022

The spatial extent of anatomical connections within the thalamus varies across the cortical hierarchy in humans and macaques

Autori: Amber Howell; Shaun Warrington; Clara Fonteneau' Youngsun Cho; Stamatios N. Sotiropoulos; John Murray; Alan Anticevic
Pubblicato in: eLife, 2024, ISSN 2050-084X
Editore: eLife Sciences Publications
DOI: 10.7554/elife.95018.1

Objective QC for diffusion MRI data: Artefact detection using normative modelling

Autori: Ramona Cirstian; Natalie J. Forde; Jesper L. R. Andersson; Stamatios N. Sotiropoulos; Christian F. Beckmann; Andre F. Marquand
Pubblicato in: Imaging Neuroscience, Numero 2, 2024, ISSN 2837-6056
Editore: MIT Press
DOI: 10.1162/imag_a_00144

The Human Connectome Project: A retrospective

Autori: Jennifer Stine Elam, Matthew F. Glasser, Michael P. Harms, Stamatios N. Sotiropoulos, Jesper L.R. Andersson, Gregory C. Burgess, Sandra W. Curtiss, Robert Oostenveld, Linda J. Larson-Prior, Jan-Mathijs Schoffelen, Michael R. Hodge, Eileen A. Cler, Daniel M. Marcus, Deanna M. Barch, Essa Yacoub, Stephen M. Smith, Kamil Ugurbil, David C. Van Essen
Pubblicato in: Neuroimage, Numero 244, 2021, ISSN 1095-9572
Editore: Elsevier
DOI: 10.1016/j.neuroimage.2021.118543

Denoising Diffusion MRI: Considerations and implications for analysis

Autori: J.P. Manzano-Patron; Steen Moeller; Jesper L.R. Andersson; Kamil Ugurbil; Essa Yacoub; Stamatios N Sotiropoulos
Pubblicato in: Imaging Neuroscience, Numero 2, 2024, ISSN 2837-6056
Editore: MIT Press
DOI: 10.1162/imag_a_00060

Mapping brain endophenotypes associated with idiopathic pulmonary fibrosis genetic risk

Autori: Ali-Reza Mohammadi-Nejad; Richard J. Allen; Luke M. Kraven; Olivia C. Leavy; R Gisli Jenkins; Louise V. Wain; Dorothee P Auer; Stamatios N. Sotiropoulos
Pubblicato in: eBiomedicine, Numero 86, 2022, ISSN 2352-3964
Editore: Elsevier BV
DOI: 10.1016/j.ebiom.2022.104356

Uncertainty mapping and probabilistic tractography using Simulation-based Inference in diffusion MRI: A comparison with classical Bayes

Autori: J.P. Manzano-Patrón, Michael Deistler, Cornelius Schröder, Theodore Kypraios, Pedro J. Gonçalves, Jakob H. Macke, Stamatios N. Sotiropoulos
Pubblicato in: Medical Image Analysis, Numero 103, 2025, Pagina/e 103580, ISSN 1361-8415
Editore: Elsevier BV
DOI: 10.1016/j.media.2025.103580

Whole brain functional connectivity: Insights from next generation neural mass modelling incorporating electrical synapses

Autori: Michael Forrester, Sammy Petros, Oliver Cattell, Yi Ming Lai, Reuben D. O’Dea, Stamatios Sotiropoulos, Stephen Coombes
Pubblicato in: PLOS Computational Biology, Numero 20, 2024, Pagina/e e1012647, ISSN 1553-7358
Editore: Public Library of Science (PLoS)
DOI: 10.1371/journal.pcbi.1012647

On stability of canonical correlation analysis and partial least squares with application to brain-behavior associations

Autori: Markus Helmer; Shaun Warrington; Ali-Reza Mohammadi-Nejad; Jie Lisa Ji; Amber Howell; Benjamin Rosand; Alan Anticevic; Stamatios N Sotiropoulos; John D Murray
Pubblicato in: Communications Biology, Numero 7, 2024, ISSN 2399-3642
Editore: Springer Nature
DOI: 10.1101/2020.08.25.265546

Connectivity Profile and Function of Uniquely Human Cortical Areas

Autori: Katherine L. Bryant, Julia Camilleri, Shaun Warrington, Guilherme Blazquez Freches, Stamatios N. Sotiropoulos, Saad Jbabdi, Simon Eickhoff, Rogier B. Mars
Pubblicato in: The Journal of Neuroscience, Numero 45, 2025, Pagina/e e2017242025, ISSN 0270-6474
Editore: Society for Neuroscience
DOI: 10.1523/jneurosci.2017-24.2025

A resource for development and comparison of multi-modal brain 3T MRI harmonisation approaches

Autori: Shaun Warrington; Asante Ntata; Olivier Mougin; Jon Campbell; Andrea Torchi; Martin Craig; Fidel Alfaro-Almagro; Karla L. Miller; Paul S. Morganl Mark Jenkinson; Stamatios N. Sotiropoulos
Pubblicato in: Imaging Neuroscience, Numero 1, 2023, ISSN 2837-6056
Editore: MIT Press
DOI: 10.1162/imag_a_00042

QuNex – An Integrative Platform for Reproducible Neuroimaging Analytics

Autori: Jie Lisa Ji, Jure Demsar, Clara Fonteneau, Zailyn Tamayo, Lining Pan, Aleksij Kraljic, Andraz Matkovic, Nina Purg, Markus Helmer, Shaun Warrington, Anderson Winkler, Valerio Zerbi, Timothy S. Coalson, Matthew F. Glasser, Michael P. Harms, Stamatios N. Sotiropoulos, John D. Murray, Alan Anticevic, Grega Repovs
Pubblicato in: Frontiers in Neuroinformatics, Numero 17, 2023, ISSN 1662-5196
Editore: Frontiers Research Foundation
DOI: 10.3389/fninf.2023.1104508

Cross-species neuroanatomy in primates using tractography

Autori: Stamatios N. Sotiropoulos, Michel Thiebaut de Schotten, Suzanne N. Haber, Stephanie J. Forkel
Pubblicato in: Brain Structure and Function, Numero 230, 2025, ISSN 1863-2661
Editore: Springer Science and Business Media LLC
DOI: 10.1007/s00429-025-02914-8

Non-reversibility outperforms functional connectivity in characterisation of brain states in MEG data

Autori: Prejaas Tewarie; Rikkert Hindriks; Yi Ming Lai; Stamatios N. Sotiropoulos; Morten Kringelbach; Gustavo Deco
Pubblicato in: Neuroimage, Numero 276, 2023, ISSN 1095-9572
Editore: Elsevier
DOI: 10.1016/j.neuroimage.2023.120186

Generalising XTRACT Tractography Protocols Across Common Macaque Brain Templates

Autori: Stephania Assimopoulos; Shaun Warrington; Katherine L Bryant; Stefan Pszczolkowski; Saad Jbabdi; Rogier B Mars; Stamatios N Sotiropoulos
Pubblicato in: Brain Structure and Function, 2024, ISSN 1863-2661
Editore: Springer
DOI: 10.1007/s00429-024-02760-0

Predicting time-resolved electrophysiological brain networks from structural eigenmodes

Autori: Prejaas Tewarie; Bastian Prasse; Jil Meier; Kanad Mandke; Shaun Warrington; Cornelis J. Stam; Matthew J. Brookes; Piet Van Mieghem; Stamatios N. Sotiropoulos; Arjan Hillebrand
Pubblicato in: Human Brain Mapping, Numero 43, 2022, Pagina/e 4475-4491, ISSN 1065-9471
Editore: John Wiley & Sons Inc.
DOI: 10.1002/hbm.25967

Right fronto-parietal networks mediate the neurocognitive benefits of enriched environments

Autori: Meadhbh B. Brosnan; Nir Shalev; Jivesh Ramduny; Stamatios N. Sotiropoulos; Magdalena Chechlacz
Pubblicato in: Brain Communications, Numero 4, 2022, ISSN 2632-1297
Editore: Oxford University Press
DOI: 10.1093/braincomms/fcac080

A multi-site, multi-modal travelling-heads resource for brain MRI harmonisation

Autori: Shaun Warrington, Andrea Torchi, Olivier Mougin, Jon Campbell, Asante Ntata, Martin Craig, Stephania Assimopoulos, Fidel Alfaro-Almagro, Karla L. Miller, Mark Jenkinson, Paul S. Morgan, Stamatios N. Sotiropoulos
Pubblicato in: Scientific Data, Numero 12, 2025, ISSN 2052-4463
Editore: Springer Science and Business Media LLC
DOI: 10.1038/s41597-025-04822-2

Conference proceedings (12)

Generative models of whole-brain, surface-based imaging features using artificial neural networks

Autori: Mohammed Amer; J.P. Manzano-Patron; Shaun Warrington; Xin Chen; Stamatios Sotiropoulos
Pubblicato in: Proceedings of the OHBM Annual Meeting, 2023, Pagina/e 2022
Editore: Organization for Human Brain Mapping
DOI: 10.5281/zenodo.10719063

ON-HARMONY 2.0: A comprehensive travelling-heads resource for multi-modal neuroimaging harmonisation

Autori: Andrea Torchi; Shaun Warrington, Shaun; Olivier Mougin; Jon Campbell; Martin Craig; Asante Ntata; Fidel Alfaro-Almagro; Karla Miller; Mark Jenkinson; Paul Morgan; Stamatios Sotiropoulos
Pubblicato in: Proceedings of the BIC-ISMRM Annual Meeting, 2024, Pagina/e P06
Editore: ISMRM
DOI: 10.5281/zenodo.13884520

EDDEN: Towards a framework for Evaluating Diffusion MRI DENoising approaches

Autori: J.P. Manzano Patron; Steen Moeller; Essa Yacoub; Stamatios Sotiropoulos
Pubblicato in: Proceedings of the ISMRM Annual Meeting, 2022, Pagina/e 0165
Editore: International Society for Magnetic Resonance in Medicine
DOI: 10.58530/2022/0165

The effect of structural connectome estimation in modelling whole-brain functional dynamics

Autori: Yi Ming Lai; Michael Forrester; Stephen Coombes; Stamatios N Sotiropoulos
Pubblicato in: Proceedings of the OHBM Annual Meeting, 2022
Editore: Organization for Human Brain Mapping
DOI: 10.5281/zenodo.10718915

Tractography protocols for the neonatal brain, standardised against the adult human and macaque

Autori: Shaun Warrington; Elinor Thompson; Jessica Dubois; Luke Baxter; Rebeccah Slater; Rogier B Mars4; Saad Jbabdi; Matteo Bastiani; Stamatios N Sotiropoulos
Pubblicato in: Proceedings of the ISMRM Annual Meeting, 2022, Pagina/e 0519
Editore: ISMRM Proceedings of the
DOI: 10.58530/2022/0519

Simulation-based inference in diffusion MRI: From uncertainty mapping to probabilistic tractography

Autori: J.P. Manzano-Patron; Michael Deistler; Cornelius Schroeder; Theodore Kypraios; Pedro Goncalves; Jakob Macke; Stamatios Sotiropoulos
Pubblicato in: Proceedings of the BIC-ISMRM Annual Meeting, 2024, Pagina/e P47
Editore: ISMRM
DOI: 10.5281/zenodo.13885239

Cross-species Standardised Subcortical Tractography

Autori: Stephania Assimopoulos; Shaun Warrington; Davide Folloni; Katherine Bryant; Sarah Heilbronner; Saad Jbabdi; Rogier Mars; Stamatios Sotiropoulos
Pubblicato in: Proceedings of the BIC-ISMRM Annual Meeting, 2024, Pagina/e T12
Editore: ISMRM
DOI: 10.5281/zenodo.13885811

Understanding brain diversity across ontogeny and phylogeny within a single common space

Autori: Shaun Warrington; E. Thompson; M. Bastiani; J. Dubois; L. Baxter; R. Slater; S. Jbabdi;, R. B. Mars; Stamatios N. Sotiropoulos
Pubblicato in: Proceedings of the OHBM Annual Meeting, 2022
Editore: Organization for Human Brain Mapping
DOI: 10.5281/zenodo.10719392

Amortised simulation-based inference in diffusion MRI using artificial neural networks

Autori: J.P. Manzano-Patron; Theodore Kypraios; Stamatios N. Sotiropoulos
Pubblicato in: Proceedings of the OHBM Annual Meeting, 2023, Pagina/e 173
Editore: Organization for Human Brain Mapping
DOI: 10.5281/zenodo.10719146

Amortised inference in diffusion MRI biophysical models using artificial neural networks and simulation-based frameworks

Autori: J.P. Manzano Patron; Theodore Kypraios; Stamatios N Sotiropoulos
Pubblicato in: Proceedings of the ISMRM Annual Meeting, 2022, Pagina/e 1644
Editore: International Society for Magnetic Resonance in Medicine
DOI: 10.58530/2022/1644

A testbed for harmonisation of multimodal neuroimaging data

Autori: Shaun Warrington; Asante Ntata; Olivier Mougin; Jon Campbell; Paul Morgan; Mark Jenkinson; Stamatios Sotiropoulos
Pubblicato in: Proceedings of the OHBM Annual Meeting, 2023
Editore: Organization for Human Bran Mapping
DOI: 10.5281/zenodo.10719184

Generalising XTRACT Tractography Protocols Across Common Macaque Brain Templates

Autori: Stephania Assimopoulos; Shaun Warrington; Stefan Pszczolkowski; Katherine L. Bryant; Rogier Mars; Stamatios Sotiropoulos
Pubblicato in: Proceedings of the OHBM Annual Meeting, 2023
Editore: Organization for Human Brain Mapping
DOI: 10.5281/zenodo.10723618

Other (1)

Personalized circuit modeling captures variation in cortical functional connectivity

Autori: Rachel A. Cooper; Murat Demirtas; Joshua B. Burt; Amber M. Howell; J. Lisa Ji; Grega Repovs; Stamatios N. Sotiropoulos; Alan Anticevic; John D. Murray
Pubblicato in: Biorxiv Preprint, 2024
Editore: biorxiv
DOI: 10.1101/2024.02.19.581085