Brain connectivity metrology for personalised neuroimaging in health and disease

Información del proyecto

Neuro-Metrology

Identificador del acuerdo de subvención: 101000969

DOI

10.3030/101000969

Fecha de la firma de la CE 25 Junio 2021

Fecha de inicio 1 Octubre 2021

Fecha de finalización 30 Septiembre 2026

Financiado con arreglo a

• EXCELLENT SCIENCE - European Research Council (ERC)

Coste total

€ 1 995 269,00

Aportación de la UE

€ 1 995 269,00

Coordinado por

THE UNIVERSITY OF NOTTINGHAM
United Kingdom

CORDIS proporciona enlaces a los documentos públicos y las publicaciones de los proyectos de los programas marco HORIZONTE.

Los enlaces a los documentos y las publicaciones de los proyectos del Séptimo Programa Marco, así como los enlaces a algunos tipos de resultados específicos, como conjuntos de datos y «software», se obtienen dinámicamente de OpenAIRE .

Publicaciones

Peer reviewed articles (18)

Concurrent mapping of brain ontogeny and phylogeny within a common space: Standardized tractography and applications

Autores: Shaun Warrington; Thompson Elinor; Bastiani Matteo; Dubois Jessica; Baxter Luke; Slater Rebeccah; Jbabdi Saad; Mars Rogier B; Sotiropoulos Stamatios N
Publicado en: Science Advances, Edición 8, 2022, ISSN 2375-2548
Editor: AAAS
DOI: 10.1126/sciadv.abq2022

The spatial extent of anatomical connections within the thalamus varies across the cortical hierarchy in humans and macaques

Autores: Amber Howell; Shaun Warrington; Clara Fonteneau' Youngsun Cho; Stamatios N. Sotiropoulos; John Murray; Alan Anticevic
Publicado en: eLife, 2024, ISSN 2050-084X
Editor: eLife Sciences Publications
DOI: 10.7554/elife.95018.1

Objective QC for diffusion MRI data: Artefact detection using normative modelling

Autores: Ramona Cirstian; Natalie J. Forde; Jesper L. R. Andersson; Stamatios N. Sotiropoulos; Christian F. Beckmann; Andre F. Marquand
Publicado en: Imaging Neuroscience, Edición 2, 2024, ISSN 2837-6056
Editor: MIT Press
DOI: 10.1162/imag_a_00144

The Human Connectome Project: A retrospective

Autores: Jennifer Stine Elam, Matthew F. Glasser, Michael P. Harms, Stamatios N. Sotiropoulos, Jesper L.R. Andersson, Gregory C. Burgess, Sandra W. Curtiss, Robert Oostenveld, Linda J. Larson-Prior, Jan-Mathijs Schoffelen, Michael R. Hodge, Eileen A. Cler, Daniel M. Marcus, Deanna M. Barch, Essa Yacoub, Stephen M. Smith, Kamil Ugurbil, David C. Van Essen
Publicado en: Neuroimage, Edición 244, 2021, ISSN 1095-9572
Editor: Elsevier
DOI: 10.1016/j.neuroimage.2021.118543

Denoising Diffusion MRI: Considerations and implications for analysis

Autores: J.P. Manzano-Patron; Steen Moeller; Jesper L.R. Andersson; Kamil Ugurbil; Essa Yacoub; Stamatios N Sotiropoulos
Publicado en: Imaging Neuroscience, Edición 2, 2024, ISSN 2837-6056
Editor: MIT Press
DOI: 10.1162/imag_a_00060

Mapping brain endophenotypes associated with idiopathic pulmonary fibrosis genetic risk

Autores: Ali-Reza Mohammadi-Nejad; Richard J. Allen; Luke M. Kraven; Olivia C. Leavy; R Gisli Jenkins; Louise V. Wain; Dorothee P Auer; Stamatios N. Sotiropoulos
Publicado en: eBiomedicine, Edición 86, 2022, ISSN 2352-3964
Editor: Elsevier BV
DOI: 10.1016/j.ebiom.2022.104356

Uncertainty mapping and probabilistic tractography using Simulation-based Inference in diffusion MRI: A comparison with classical Bayes

Autores: J.P. Manzano-Patrón, Michael Deistler, Cornelius Schröder, Theodore Kypraios, Pedro J. Gonçalves, Jakob H. Macke, Stamatios N. Sotiropoulos
Publicado en: Medical Image Analysis, Edición 103, 2025, Página(s) 103580, ISSN 1361-8415
Editor: Elsevier BV
DOI: 10.1016/j.media.2025.103580

Whole brain functional connectivity: Insights from next generation neural mass modelling incorporating electrical synapses

Autores: Michael Forrester, Sammy Petros, Oliver Cattell, Yi Ming Lai, Reuben D. O’Dea, Stamatios Sotiropoulos, Stephen Coombes
Publicado en: PLOS Computational Biology, Edición 20, 2024, Página(s) e1012647, ISSN 1553-7358
Editor: Public Library of Science (PLoS)
DOI: 10.1371/journal.pcbi.1012647

On stability of canonical correlation analysis and partial least squares with application to brain-behavior associations

Autores: Markus Helmer; Shaun Warrington; Ali-Reza Mohammadi-Nejad; Jie Lisa Ji; Amber Howell; Benjamin Rosand; Alan Anticevic; Stamatios N Sotiropoulos; John D Murray
Publicado en: Communications Biology, Edición 7, 2024, ISSN 2399-3642
Editor: Springer Nature
DOI: 10.1101/2020.08.25.265546

Connectivity Profile and Function of Uniquely Human Cortical Areas

Autores: Katherine L. Bryant, Julia Camilleri, Shaun Warrington, Guilherme Blazquez Freches, Stamatios N. Sotiropoulos, Saad Jbabdi, Simon Eickhoff, Rogier B. Mars
Publicado en: The Journal of Neuroscience, Edición 45, 2025, Página(s) e2017242025, ISSN 0270-6474
Editor: Society for Neuroscience
DOI: 10.1523/jneurosci.2017-24.2025

A resource for development and comparison of multi-modal brain 3T MRI harmonisation approaches

Autores: Shaun Warrington; Asante Ntata; Olivier Mougin; Jon Campbell; Andrea Torchi; Martin Craig; Fidel Alfaro-Almagro; Karla L. Miller; Paul S. Morganl Mark Jenkinson; Stamatios N. Sotiropoulos
Publicado en: Imaging Neuroscience, Edición 1, 2023, ISSN 2837-6056
Editor: MIT Press
DOI: 10.1162/imag_a_00042

QuNex – An Integrative Platform for Reproducible Neuroimaging Analytics

Autores: Jie Lisa Ji, Jure Demsar, Clara Fonteneau, Zailyn Tamayo, Lining Pan, Aleksij Kraljic, Andraz Matkovic, Nina Purg, Markus Helmer, Shaun Warrington, Anderson Winkler, Valerio Zerbi, Timothy S. Coalson, Matthew F. Glasser, Michael P. Harms, Stamatios N. Sotiropoulos, John D. Murray, Alan Anticevic, Grega Repovs
Publicado en: Frontiers in Neuroinformatics, Edición 17, 2023, ISSN 1662-5196
Editor: Frontiers Research Foundation
DOI: 10.3389/fninf.2023.1104508

Cross-species neuroanatomy in primates using tractography

Autores: Stamatios N. Sotiropoulos, Michel Thiebaut de Schotten, Suzanne N. Haber, Stephanie J. Forkel
Publicado en: Brain Structure and Function, Edición 230, 2025, ISSN 1863-2661
Editor: Springer Science and Business Media LLC
DOI: 10.1007/s00429-025-02914-8

Non-reversibility outperforms functional connectivity in characterisation of brain states in MEG data

Autores: Prejaas Tewarie; Rikkert Hindriks; Yi Ming Lai; Stamatios N. Sotiropoulos; Morten Kringelbach; Gustavo Deco
Publicado en: Neuroimage, Edición 276, 2023, ISSN 1095-9572
Editor: Elsevier
DOI: 10.1016/j.neuroimage.2023.120186

Generalising XTRACT Tractography Protocols Across Common Macaque Brain Templates

Autores: Stephania Assimopoulos; Shaun Warrington; Katherine L Bryant; Stefan Pszczolkowski; Saad Jbabdi; Rogier B Mars; Stamatios N Sotiropoulos
Publicado en: Brain Structure and Function, 2024, ISSN 1863-2661
Editor: Springer
DOI: 10.1007/s00429-024-02760-0

Predicting time-resolved electrophysiological brain networks from structural eigenmodes

Autores: Prejaas Tewarie; Bastian Prasse; Jil Meier; Kanad Mandke; Shaun Warrington; Cornelis J. Stam; Matthew J. Brookes; Piet Van Mieghem; Stamatios N. Sotiropoulos; Arjan Hillebrand
Publicado en: Human Brain Mapping, Edición 43, 2022, Página(s) 4475-4491, ISSN 1065-9471
Editor: John Wiley & Sons Inc.
DOI: 10.1002/hbm.25967

Right fronto-parietal networks mediate the neurocognitive benefits of enriched environments

Autores: Meadhbh B. Brosnan; Nir Shalev; Jivesh Ramduny; Stamatios N. Sotiropoulos; Magdalena Chechlacz
Publicado en: Brain Communications, Edición 4, 2022, ISSN 2632-1297
Editor: Oxford University Press
DOI: 10.1093/braincomms/fcac080

A multi-site, multi-modal travelling-heads resource for brain MRI harmonisation

Autores: Shaun Warrington, Andrea Torchi, Olivier Mougin, Jon Campbell, Asante Ntata, Martin Craig, Stephania Assimopoulos, Fidel Alfaro-Almagro, Karla L. Miller, Mark Jenkinson, Paul S. Morgan, Stamatios N. Sotiropoulos
Publicado en: Scientific Data, Edición 12, 2025, ISSN 2052-4463
Editor: Springer Science and Business Media LLC
DOI: 10.1038/s41597-025-04822-2

Conference proceedings (12)

Generative models of whole-brain, surface-based imaging features using artificial neural networks

Autores: Mohammed Amer; J.P. Manzano-Patron; Shaun Warrington; Xin Chen; Stamatios Sotiropoulos
Publicado en: Proceedings of the OHBM Annual Meeting, 2023, Página(s) 2022
Editor: Organization for Human Brain Mapping
DOI: 10.5281/zenodo.10719063

ON-HARMONY 2.0: A comprehensive travelling-heads resource for multi-modal neuroimaging harmonisation

Autores: Andrea Torchi; Shaun Warrington, Shaun; Olivier Mougin; Jon Campbell; Martin Craig; Asante Ntata; Fidel Alfaro-Almagro; Karla Miller; Mark Jenkinson; Paul Morgan; Stamatios Sotiropoulos
Publicado en: Proceedings of the BIC-ISMRM Annual Meeting, 2024, Página(s) P06
Editor: ISMRM
DOI: 10.5281/zenodo.13884520

EDDEN: Towards a framework for Evaluating Diffusion MRI DENoising approaches

Autores: J.P. Manzano Patron; Steen Moeller; Essa Yacoub; Stamatios Sotiropoulos
Publicado en: Proceedings of the ISMRM Annual Meeting, 2022, Página(s) 0165
Editor: International Society for Magnetic Resonance in Medicine
DOI: 10.58530/2022/0165

The effect of structural connectome estimation in modelling whole-brain functional dynamics

Autores: Yi Ming Lai; Michael Forrester; Stephen Coombes; Stamatios N Sotiropoulos
Publicado en: Proceedings of the OHBM Annual Meeting, 2022
Editor: Organization for Human Brain Mapping
DOI: 10.5281/zenodo.10718915

Tractography protocols for the neonatal brain, standardised against the adult human and macaque

Autores: Shaun Warrington; Elinor Thompson; Jessica Dubois; Luke Baxter; Rebeccah Slater; Rogier B Mars4; Saad Jbabdi; Matteo Bastiani; Stamatios N Sotiropoulos
Publicado en: Proceedings of the ISMRM Annual Meeting, 2022, Página(s) 0519
Editor: ISMRM Proceedings of the
DOI: 10.58530/2022/0519

Simulation-based inference in diffusion MRI: From uncertainty mapping to probabilistic tractography

Autores: J.P. Manzano-Patron; Michael Deistler; Cornelius Schroeder; Theodore Kypraios; Pedro Goncalves; Jakob Macke; Stamatios Sotiropoulos
Publicado en: Proceedings of the BIC-ISMRM Annual Meeting, 2024, Página(s) P47
Editor: ISMRM
DOI: 10.5281/zenodo.13885239

Cross-species Standardised Subcortical Tractography

Autores: Stephania Assimopoulos; Shaun Warrington; Davide Folloni; Katherine Bryant; Sarah Heilbronner; Saad Jbabdi; Rogier Mars; Stamatios Sotiropoulos
Publicado en: Proceedings of the BIC-ISMRM Annual Meeting, 2024, Página(s) T12
Editor: ISMRM
DOI: 10.5281/zenodo.13885811

Understanding brain diversity across ontogeny and phylogeny within a single common space

Autores: Shaun Warrington; E. Thompson; M. Bastiani; J. Dubois; L. Baxter; R. Slater; S. Jbabdi;, R. B. Mars; Stamatios N. Sotiropoulos
Publicado en: Proceedings of the OHBM Annual Meeting, 2022
Editor: Organization for Human Brain Mapping
DOI: 10.5281/zenodo.10719392

Amortised simulation-based inference in diffusion MRI using artificial neural networks

Autores: J.P. Manzano-Patron; Theodore Kypraios; Stamatios N. Sotiropoulos
Publicado en: Proceedings of the OHBM Annual Meeting, 2023, Página(s) 173
Editor: Organization for Human Brain Mapping
DOI: 10.5281/zenodo.10719146

Amortised inference in diffusion MRI biophysical models using artificial neural networks and simulation-based frameworks

Autores: J.P. Manzano Patron; Theodore Kypraios; Stamatios N Sotiropoulos
Publicado en: Proceedings of the ISMRM Annual Meeting, 2022, Página(s) 1644
Editor: International Society for Magnetic Resonance in Medicine
DOI: 10.58530/2022/1644

A testbed for harmonisation of multimodal neuroimaging data

Autores: Shaun Warrington; Asante Ntata; Olivier Mougin; Jon Campbell; Paul Morgan; Mark Jenkinson; Stamatios Sotiropoulos
Publicado en: Proceedings of the OHBM Annual Meeting, 2023
Editor: Organization for Human Bran Mapping
DOI: 10.5281/zenodo.10719184

Generalising XTRACT Tractography Protocols Across Common Macaque Brain Templates

Autores: Stephania Assimopoulos; Shaun Warrington; Stefan Pszczolkowski; Katherine L. Bryant; Rogier Mars; Stamatios Sotiropoulos
Publicado en: Proceedings of the OHBM Annual Meeting, 2023
Editor: Organization for Human Brain Mapping
DOI: 10.5281/zenodo.10723618

Other (1)

Personalized circuit modeling captures variation in cortical functional connectivity

Autores: Rachel A. Cooper; Murat Demirtas; Joshua B. Burt; Amber M. Howell; J. Lisa Ji; Grega Repovs; Stamatios N. Sotiropoulos; Alan Anticevic; John D. Murray
Publicado en: Biorxiv Preprint, 2024
Editor: biorxiv
DOI: 10.1101/2024.02.19.581085