Brain connectivity metrology for personalised neuroimaging in health and disease

Informacje na temat projektu

Neuro-Metrology

Identyfikator umowy o grant: 101000969

DOI

10.3030/101000969

Data podpisania przez KE 25 Czerwca 2021

Data rozpoczęcia 1 Października 2021

Data zakończenia 30 Września 2026

Finansowanie w ramach

• EXCELLENT SCIENCE - European Research Council (ERC)

Koszt całkowity

€ 1 995 269,00

Wkład UE

€ 1 995 269,00

Koordynowany przez

THE UNIVERSITY OF NOTTINGHAM
United Kingdom

CORDIS oferuje możliwość skorzystania z odnośników do publicznie dostępnych publikacji i rezultatów projektów realizowanych w ramach programów ramowych HORYZONT.

Odnośniki do rezultatów i publikacji związanych z poszczególnymi projektami 7PR, a także odnośniki do niektórych konkretnych kategorii wyników, takich jak zbiory danych i oprogramowanie, są dynamicznie pobierane z systemu OpenAIRE .

Publikacje

Peer reviewed articles (18)

Concurrent mapping of brain ontogeny and phylogeny within a common space: Standardized tractography and applications

Autorzy: Shaun Warrington; Thompson Elinor; Bastiani Matteo; Dubois Jessica; Baxter Luke; Slater Rebeccah; Jbabdi Saad; Mars Rogier B; Sotiropoulos Stamatios N
Opublikowane w: Science Advances, Numer 8, 2022, ISSN 2375-2548
Wydawca: AAAS
DOI: 10.1126/sciadv.abq2022

The spatial extent of anatomical connections within the thalamus varies across the cortical hierarchy in humans and macaques

Autorzy: Amber Howell; Shaun Warrington; Clara Fonteneau' Youngsun Cho; Stamatios N. Sotiropoulos; John Murray; Alan Anticevic
Opublikowane w: eLife, 2024, ISSN 2050-084X
Wydawca: eLife Sciences Publications
DOI: 10.7554/elife.95018.1

Objective QC for diffusion MRI data: Artefact detection using normative modelling

Autorzy: Ramona Cirstian; Natalie J. Forde; Jesper L. R. Andersson; Stamatios N. Sotiropoulos; Christian F. Beckmann; Andre F. Marquand
Opublikowane w: Imaging Neuroscience, Numer 2, 2024, ISSN 2837-6056
Wydawca: MIT Press
DOI: 10.1162/imag_a_00144

The Human Connectome Project: A retrospective

Autorzy: Jennifer Stine Elam, Matthew F. Glasser, Michael P. Harms, Stamatios N. Sotiropoulos, Jesper L.R. Andersson, Gregory C. Burgess, Sandra W. Curtiss, Robert Oostenveld, Linda J. Larson-Prior, Jan-Mathijs Schoffelen, Michael R. Hodge, Eileen A. Cler, Daniel M. Marcus, Deanna M. Barch, Essa Yacoub, Stephen M. Smith, Kamil Ugurbil, David C. Van Essen
Opublikowane w: Neuroimage, Numer 244, 2021, ISSN 1095-9572
Wydawca: Elsevier
DOI: 10.1016/j.neuroimage.2021.118543

Denoising Diffusion MRI: Considerations and implications for analysis

Autorzy: J.P. Manzano-Patron; Steen Moeller; Jesper L.R. Andersson; Kamil Ugurbil; Essa Yacoub; Stamatios N Sotiropoulos
Opublikowane w: Imaging Neuroscience, Numer 2, 2024, ISSN 2837-6056
Wydawca: MIT Press
DOI: 10.1162/imag_a_00060

Mapping brain endophenotypes associated with idiopathic pulmonary fibrosis genetic risk

Autorzy: Ali-Reza Mohammadi-Nejad; Richard J. Allen; Luke M. Kraven; Olivia C. Leavy; R Gisli Jenkins; Louise V. Wain; Dorothee P Auer; Stamatios N. Sotiropoulos
Opublikowane w: eBiomedicine, Numer 86, 2022, ISSN 2352-3964
Wydawca: Elsevier BV
DOI: 10.1016/j.ebiom.2022.104356

Uncertainty mapping and probabilistic tractography using Simulation-based Inference in diffusion MRI: A comparison with classical Bayes

Autorzy: J.P. Manzano-Patrón, Michael Deistler, Cornelius Schröder, Theodore Kypraios, Pedro J. Gonçalves, Jakob H. Macke, Stamatios N. Sotiropoulos
Opublikowane w: Medical Image Analysis, Numer 103, 2025, Strona(/y) 103580, ISSN 1361-8415
Wydawca: Elsevier BV
DOI: 10.1016/j.media.2025.103580

Whole brain functional connectivity: Insights from next generation neural mass modelling incorporating electrical synapses

Autorzy: Michael Forrester, Sammy Petros, Oliver Cattell, Yi Ming Lai, Reuben D. O’Dea, Stamatios Sotiropoulos, Stephen Coombes
Opublikowane w: PLOS Computational Biology, Numer 20, 2024, Strona(/y) e1012647, ISSN 1553-7358
Wydawca: Public Library of Science (PLoS)
DOI: 10.1371/journal.pcbi.1012647

On stability of canonical correlation analysis and partial least squares with application to brain-behavior associations

Autorzy: Markus Helmer; Shaun Warrington; Ali-Reza Mohammadi-Nejad; Jie Lisa Ji; Amber Howell; Benjamin Rosand; Alan Anticevic; Stamatios N Sotiropoulos; John D Murray
Opublikowane w: Communications Biology, Numer 7, 2024, ISSN 2399-3642
Wydawca: Springer Nature
DOI: 10.1101/2020.08.25.265546

Connectivity Profile and Function of Uniquely Human Cortical Areas

Autorzy: Katherine L. Bryant, Julia Camilleri, Shaun Warrington, Guilherme Blazquez Freches, Stamatios N. Sotiropoulos, Saad Jbabdi, Simon Eickhoff, Rogier B. Mars
Opublikowane w: The Journal of Neuroscience, Numer 45, 2025, Strona(/y) e2017242025, ISSN 0270-6474
Wydawca: Society for Neuroscience
DOI: 10.1523/jneurosci.2017-24.2025

A resource for development and comparison of multi-modal brain 3T MRI harmonisation approaches

Autorzy: Shaun Warrington; Asante Ntata; Olivier Mougin; Jon Campbell; Andrea Torchi; Martin Craig; Fidel Alfaro-Almagro; Karla L. Miller; Paul S. Morganl Mark Jenkinson; Stamatios N. Sotiropoulos
Opublikowane w: Imaging Neuroscience, Numer 1, 2023, ISSN 2837-6056
Wydawca: MIT Press
DOI: 10.1162/imag_a_00042

QuNex – An Integrative Platform for Reproducible Neuroimaging Analytics

Autorzy: Jie Lisa Ji, Jure Demsar, Clara Fonteneau, Zailyn Tamayo, Lining Pan, Aleksij Kraljic, Andraz Matkovic, Nina Purg, Markus Helmer, Shaun Warrington, Anderson Winkler, Valerio Zerbi, Timothy S. Coalson, Matthew F. Glasser, Michael P. Harms, Stamatios N. Sotiropoulos, John D. Murray, Alan Anticevic, Grega Repovs
Opublikowane w: Frontiers in Neuroinformatics, Numer 17, 2023, ISSN 1662-5196
Wydawca: Frontiers Research Foundation
DOI: 10.3389/fninf.2023.1104508

Cross-species neuroanatomy in primates using tractography

Autorzy: Stamatios N. Sotiropoulos, Michel Thiebaut de Schotten, Suzanne N. Haber, Stephanie J. Forkel
Opublikowane w: Brain Structure and Function, Numer 230, 2025, ISSN 1863-2661
Wydawca: Springer Science and Business Media LLC
DOI: 10.1007/s00429-025-02914-8

Non-reversibility outperforms functional connectivity in characterisation of brain states in MEG data

Autorzy: Prejaas Tewarie; Rikkert Hindriks; Yi Ming Lai; Stamatios N. Sotiropoulos; Morten Kringelbach; Gustavo Deco
Opublikowane w: Neuroimage, Numer 276, 2023, ISSN 1095-9572
Wydawca: Elsevier
DOI: 10.1016/j.neuroimage.2023.120186

Generalising XTRACT Tractography Protocols Across Common Macaque Brain Templates

Autorzy: Stephania Assimopoulos; Shaun Warrington; Katherine L Bryant; Stefan Pszczolkowski; Saad Jbabdi; Rogier B Mars; Stamatios N Sotiropoulos
Opublikowane w: Brain Structure and Function, 2024, ISSN 1863-2661
Wydawca: Springer
DOI: 10.1007/s00429-024-02760-0

Predicting time-resolved electrophysiological brain networks from structural eigenmodes

Autorzy: Prejaas Tewarie; Bastian Prasse; Jil Meier; Kanad Mandke; Shaun Warrington; Cornelis J. Stam; Matthew J. Brookes; Piet Van Mieghem; Stamatios N. Sotiropoulos; Arjan Hillebrand
Opublikowane w: Human Brain Mapping, Numer 43, 2022, Strona(/y) 4475-4491, ISSN 1065-9471
Wydawca: John Wiley & Sons Inc.
DOI: 10.1002/hbm.25967

Right fronto-parietal networks mediate the neurocognitive benefits of enriched environments

Autorzy: Meadhbh B. Brosnan; Nir Shalev; Jivesh Ramduny; Stamatios N. Sotiropoulos; Magdalena Chechlacz
Opublikowane w: Brain Communications, Numer 4, 2022, ISSN 2632-1297
Wydawca: Oxford University Press
DOI: 10.1093/braincomms/fcac080

A multi-site, multi-modal travelling-heads resource for brain MRI harmonisation

Autorzy: Shaun Warrington, Andrea Torchi, Olivier Mougin, Jon Campbell, Asante Ntata, Martin Craig, Stephania Assimopoulos, Fidel Alfaro-Almagro, Karla L. Miller, Mark Jenkinson, Paul S. Morgan, Stamatios N. Sotiropoulos
Opublikowane w: Scientific Data, Numer 12, 2025, ISSN 2052-4463
Wydawca: Springer Science and Business Media LLC
DOI: 10.1038/s41597-025-04822-2

Conference proceedings (12)

Generative models of whole-brain, surface-based imaging features using artificial neural networks

Autorzy: Mohammed Amer; J.P. Manzano-Patron; Shaun Warrington; Xin Chen; Stamatios Sotiropoulos
Opublikowane w: Proceedings of the OHBM Annual Meeting, 2023, Strona(/y) 2022
Wydawca: Organization for Human Brain Mapping
DOI: 10.5281/zenodo.10719063

ON-HARMONY 2.0: A comprehensive travelling-heads resource for multi-modal neuroimaging harmonisation

Autorzy: Andrea Torchi; Shaun Warrington, Shaun; Olivier Mougin; Jon Campbell; Martin Craig; Asante Ntata; Fidel Alfaro-Almagro; Karla Miller; Mark Jenkinson; Paul Morgan; Stamatios Sotiropoulos
Opublikowane w: Proceedings of the BIC-ISMRM Annual Meeting, 2024, Strona(/y) P06
Wydawca: ISMRM
DOI: 10.5281/zenodo.13884520

EDDEN: Towards a framework for Evaluating Diffusion MRI DENoising approaches

Autorzy: J.P. Manzano Patron; Steen Moeller; Essa Yacoub; Stamatios Sotiropoulos
Opublikowane w: Proceedings of the ISMRM Annual Meeting, 2022, Strona(/y) 0165
Wydawca: International Society for Magnetic Resonance in Medicine
DOI: 10.58530/2022/0165

The effect of structural connectome estimation in modelling whole-brain functional dynamics

Autorzy: Yi Ming Lai; Michael Forrester; Stephen Coombes; Stamatios N Sotiropoulos
Opublikowane w: Proceedings of the OHBM Annual Meeting, 2022
Wydawca: Organization for Human Brain Mapping
DOI: 10.5281/zenodo.10718915

Tractography protocols for the neonatal brain, standardised against the adult human and macaque

Autorzy: Shaun Warrington; Elinor Thompson; Jessica Dubois; Luke Baxter; Rebeccah Slater; Rogier B Mars4; Saad Jbabdi; Matteo Bastiani; Stamatios N Sotiropoulos
Opublikowane w: Proceedings of the ISMRM Annual Meeting, 2022, Strona(/y) 0519
Wydawca: ISMRM Proceedings of the
DOI: 10.58530/2022/0519

Simulation-based inference in diffusion MRI: From uncertainty mapping to probabilistic tractography

Autorzy: J.P. Manzano-Patron; Michael Deistler; Cornelius Schroeder; Theodore Kypraios; Pedro Goncalves; Jakob Macke; Stamatios Sotiropoulos
Opublikowane w: Proceedings of the BIC-ISMRM Annual Meeting, 2024, Strona(/y) P47
Wydawca: ISMRM
DOI: 10.5281/zenodo.13885239

Cross-species Standardised Subcortical Tractography

Autorzy: Stephania Assimopoulos; Shaun Warrington; Davide Folloni; Katherine Bryant; Sarah Heilbronner; Saad Jbabdi; Rogier Mars; Stamatios Sotiropoulos
Opublikowane w: Proceedings of the BIC-ISMRM Annual Meeting, 2024, Strona(/y) T12
Wydawca: ISMRM
DOI: 10.5281/zenodo.13885811

Understanding brain diversity across ontogeny and phylogeny within a single common space

Autorzy: Shaun Warrington; E. Thompson; M. Bastiani; J. Dubois; L. Baxter; R. Slater; S. Jbabdi;, R. B. Mars; Stamatios N. Sotiropoulos
Opublikowane w: Proceedings of the OHBM Annual Meeting, 2022
Wydawca: Organization for Human Brain Mapping
DOI: 10.5281/zenodo.10719392

Amortised simulation-based inference in diffusion MRI using artificial neural networks

Autorzy: J.P. Manzano-Patron; Theodore Kypraios; Stamatios N. Sotiropoulos
Opublikowane w: Proceedings of the OHBM Annual Meeting, 2023, Strona(/y) 173
Wydawca: Organization for Human Brain Mapping
DOI: 10.5281/zenodo.10719146

Amortised inference in diffusion MRI biophysical models using artificial neural networks and simulation-based frameworks

Autorzy: J.P. Manzano Patron; Theodore Kypraios; Stamatios N Sotiropoulos
Opublikowane w: Proceedings of the ISMRM Annual Meeting, 2022, Strona(/y) 1644
Wydawca: International Society for Magnetic Resonance in Medicine
DOI: 10.58530/2022/1644

A testbed for harmonisation of multimodal neuroimaging data

Autorzy: Shaun Warrington; Asante Ntata; Olivier Mougin; Jon Campbell; Paul Morgan; Mark Jenkinson; Stamatios Sotiropoulos
Opublikowane w: Proceedings of the OHBM Annual Meeting, 2023
Wydawca: Organization for Human Bran Mapping
DOI: 10.5281/zenodo.10719184

Generalising XTRACT Tractography Protocols Across Common Macaque Brain Templates

Autorzy: Stephania Assimopoulos; Shaun Warrington; Stefan Pszczolkowski; Katherine L. Bryant; Rogier Mars; Stamatios Sotiropoulos
Opublikowane w: Proceedings of the OHBM Annual Meeting, 2023
Wydawca: Organization for Human Brain Mapping
DOI: 10.5281/zenodo.10723618

Other (1)

Personalized circuit modeling captures variation in cortical functional connectivity

Autorzy: Rachel A. Cooper; Murat Demirtas; Joshua B. Burt; Amber M. Howell; J. Lisa Ji; Grega Repovs; Stamatios N. Sotiropoulos; Alan Anticevic; John D. Murray
Opublikowane w: Biorxiv Preprint, 2024
Wydawca: biorxiv
DOI: 10.1101/2024.02.19.581085